Wall clock time and date at job start Tue Mar 31 2020 14:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99475 * 2 1 4 4 H 1.48504 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47575 * 300.00267 * 3 2 1 6 6 H 1.48508 * 109.46978 * 60.00781 * 3 2 1 7 7 C 1.38806 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99851 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99716 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47385 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46732 * 54.99828 * 11 10 9 13 13 C 1.53003 * 109.46858 * 295.00230 * 11 10 9 14 14 C 1.53000 * 109.46858 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47037 * 59.99722 * 14 13 11 16 16 C 1.52995 * 109.47404 * 300.00045 * 15 14 13 17 17 C 1.52995 * 109.47337 * 175.00082 * 11 10 9 18 18 H 1.09007 * 109.47080 * 299.99517 * 17 11 10 19 19 N 1.46499 * 109.47455 * 60.00113 * 17 11 10 20 20 C 1.34777 * 120.00199 * 205.00257 * 19 17 11 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 17 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 17 23 23 N 1.46902 * 109.47027 * 179.72353 * 22 20 19 24 24 C 1.47009 * 110.99715 * 293.63172 * 23 22 20 25 25 C 1.53099 * 109.25734 * 177.60649 * 24 23 22 26 26 O 1.43018 * 109.25400 * 56.85201 * 25 24 23 27 27 C 1.43014 * 113.73874 * 301.32703 * 26 25 24 28 28 C 1.47014 * 110.99760 * 170.00137 * 23 22 20 29 29 H 0.96999 * 120.00504 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00022 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47180 * 60.00238 * 10 9 7 32 32 H 1.09005 * 109.47090 * 300.00644 * 10 9 7 33 33 H 1.08995 * 109.47171 * 59.99895 * 13 11 10 34 34 H 1.08993 * 109.46950 * 299.99244 * 13 11 10 35 35 H 1.08998 * 109.47074 * 300.00061 * 14 13 11 36 36 H 1.08998 * 109.46925 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47307 * 179.97438 * 15 14 13 38 38 H 1.09007 * 109.47147 * 60.00129 * 15 14 13 39 39 H 1.08998 * 109.46943 * 299.99534 * 16 15 14 40 40 H 1.09005 * 109.47038 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99484 * 24.99354 * 19 17 11 42 42 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 43 43 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 44 44 H 1.08997 * 109.50792 * 297.54662 * 24 23 22 45 45 H 1.09007 * 109.50894 * 57.67782 * 24 23 22 46 46 H 1.08995 * 109.50873 * 296.91840 * 25 24 23 47 47 H 1.09003 * 109.54443 * 176.80574 * 25 24 23 48 48 H 1.09005 * 109.50677 * 298.73778 * 27 26 25 49 49 H 1.08998 * 109.54116 * 178.63249 * 27 26 25 50 50 H 1.09008 * 109.50310 * 302.32158 * 28 23 22 51 51 H 1.08992 * 109.51131 * 62.45270 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8913 2.3964 1.2127 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 1 0.3803 -4.7126 -0.8433 13 6 0.2688 -4.8115 1.3059 14 6 -0.7257 -5.9741 1.3050 15 6 0.0348 -7.2957 1.1789 16 6 0.8301 -7.3039 -0.1281 17 6 1.8251 -6.1410 -0.1269 18 1 2.3916 -6.1469 -1.0581 19 7 2.7441 -6.2849 1.0049 20 6 3.8436 -7.0553 0.8864 21 8 4.0719 -7.6299 -0.1570 22 6 4.7858 -7.2083 2.0526 23 7 5.8932 -8.0963 1.6743 24 6 5.4133 -9.4658 1.4390 25 6 6.5862 -10.3417 0.9904 26 8 7.6175 -10.2919 1.9800 27 6 8.1086 -8.9729 2.2338 28 6 6.9511 -8.0832 2.6950 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 2.6849 -3.7144 0.8895 32 1 2.6850 -3.7143 -0.8905 33 1 -0.2733 -3.8702 1.3954 34 1 0.9526 -4.9186 2.1479 35 1 -1.4094 -5.8667 0.4629 36 1 -1.2920 -5.9686 2.2363 37 1 -0.6736 -8.1241 1.1787 38 1 0.7186 -7.4032 2.0210 39 1 0.1463 -7.1966 -0.9701 40 1 1.3716 -8.2457 -0.2180 41 1 2.5614 -5.8256 1.8394 42 1 5.1819 -6.2314 2.3302 43 1 4.2494 -7.6367 2.8992 44 1 4.9910 -9.8669 2.3603 45 1 4.6490 -9.4552 0.6618 46 1 6.9743 -9.9721 0.0413 47 1 6.2474 -11.3706 0.8692 48 1 8.5410 -8.5635 1.3208 49 1 8.8707 -9.0112 3.0121 50 1 7.3094 -7.0632 2.8348 51 1 6.5535 -8.4622 3.6364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754340347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:32 Heat of formation + Delta-G solvation = -97.242255 kcal Electronic energy + Delta-G solvation = -29007.491662 eV Core-core repulsion = 25133.568944 eV Total energy + Delta-G solvation = -3873.922718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51146 -40.44748 -39.16018 -36.55043 -36.34354 -34.64958 -33.70993 -32.11378 -31.36176 -31.22768 -29.69579 -27.00550 -25.94127 -24.98467 -24.68333 -23.34768 -22.17460 -21.76706 -21.34450 -19.99560 -19.26459 -18.22992 -17.61307 -17.10855 -16.85463 -16.57767 -16.50509 -16.24141 -16.03093 -15.70003 -15.62531 -15.30307 -15.07559 -14.94282 -14.71410 -14.62058 -14.35767 -13.97514 -13.45519 -13.31382 -13.08058 -13.02761 -12.95447 -12.84464 -12.73398 -12.57747 -12.35965 -12.26057 -12.08725 -11.91784 -11.84994 -11.56792 -11.41239 -11.17254 -11.03618 -10.95519 -10.85454 -10.50573 -9.93325 -9.38486 -8.98845 -7.95723 -5.23837 1.46697 1.47503 1.57321 1.70707 2.09230 2.55175 2.81725 2.98765 3.37946 3.58507 3.77507 3.81232 3.85862 3.95154 3.99585 4.09182 4.15620 4.21168 4.24518 4.26536 4.37971 4.44003 4.47316 4.49273 4.50805 4.59571 4.63759 4.69027 4.74466 4.76381 4.83429 4.87401 4.92835 5.00465 5.03006 5.09786 5.18396 5.27811 5.31645 5.36476 5.47903 5.49963 5.53830 5.64809 5.80178 5.92883 6.16634 6.26980 6.63930 7.33851 7.34025 8.09543 8.33651 9.27785 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002926 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.420036 B = 9567.184540 C =11208.756613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.741 5.741 10 C 0.163 3.837 11 C -0.088 4.088 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.115 4.115 15 C -0.107 4.107 16 C -0.121 4.121 17 C 0.166 3.834 18 H 0.064 0.936 19 N -0.709 5.709 20 C 0.513 3.487 21 O -0.564 6.564 22 C 0.039 3.961 23 N -0.540 5.540 24 C 0.019 3.981 25 C 0.067 3.933 26 O -0.403 6.403 27 C 0.060 3.940 28 C 0.019 3.981 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.026 0.974 32 H 0.001 0.999 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.408 0.592 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.112 0.888 48 H 0.054 0.946 49 H 0.121 0.879 50 H 0.102 0.898 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -21.705 8.407 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.384 5.384 10 C 0.036 3.964 11 C -0.107 4.107 12 H 0.092 0.908 13 C -0.141 4.141 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.060 3.940 18 H 0.082 0.918 19 N -0.363 5.363 20 C 0.300 3.700 21 O -0.443 6.443 22 C -0.092 4.092 23 N -0.266 5.266 24 C -0.109 4.109 25 C -0.010 4.010 26 O -0.322 6.322 27 C -0.017 4.017 28 C -0.108 4.108 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.044 0.956 32 H 0.019 0.981 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.245 0.755 42 H 0.139 0.861 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.130 0.870 48 H 0.072 0.928 49 H 0.139 0.861 50 H 0.120 0.880 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.711 -22.006 7.320 24.773 hybrid contribution -0.648 1.568 0.525 1.776 sum 8.063 -20.438 7.845 23.329 Atomic orbital electron populations 1.69805 1.06477 1.25984 1.59540 1.25508 0.96378 1.00900 1.03735 0.85121 0.78198 0.80016 0.76710 1.19272 1.22188 1.21798 1.19619 0.91341 0.85489 1.41094 0.91099 1.42548 1.05640 1.00936 1.89241 1.20739 0.93601 0.84936 0.97125 1.21448 0.96865 0.92687 0.99728 0.90818 1.21441 0.97976 0.98642 0.96075 1.21534 0.97473 0.93884 1.02309 1.21434 0.98711 0.97270 0.96989 1.21832 0.97496 0.97248 0.99334 1.20707 0.89831 0.93975 0.89484 0.91818 1.46029 1.23691 1.49654 1.16892 1.20882 0.81216 0.78219 0.89709 1.90643 1.74672 1.47796 1.31175 1.22022 0.92125 1.00410 0.94641 1.61819 1.10813 1.08934 1.44986 1.22849 0.98758 0.88055 1.01215 1.22677 0.86871 1.00655 0.90821 1.87942 1.55045 1.29042 1.60172 1.22821 0.95404 0.81799 1.01645 1.22883 0.92724 1.02389 0.92843 0.93982 0.79163 0.95570 0.98064 0.93441 0.91453 0.92233 0.90915 0.90830 0.91580 0.90819 0.92164 0.75473 0.86117 0.89582 0.93966 0.89464 0.93162 0.87006 0.92791 0.86142 0.87979 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.74 -36.91 5.33 -343.45 -1.83 -38.74 16 10 C 0.16 6.34 5.42 86.38 0.47 6.81 16 11 C -0.09 -2.64 2.02 -10.79 -0.02 -2.66 16 12 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 13 C -0.10 -2.78 4.90 30.60 0.15 -2.63 16 14 C -0.11 -2.40 5.92 30.59 0.18 -2.22 16 15 C -0.11 -1.93 5.77 30.59 0.18 -1.76 16 16 C -0.12 -2.61 5.61 30.61 0.17 -2.44 16 17 C 0.17 4.28 2.23 45.01 0.10 4.38 16 18 H 0.06 1.98 7.58 -2.38 -0.02 1.96 16 19 N -0.71 -15.84 3.62 -442.46 -1.60 -17.44 16 20 C 0.51 12.36 7.50 87.66 0.66 13.02 16 21 O -0.56 -17.87 14.01 -3.04 -0.04 -17.91 16 22 C 0.04 0.68 5.45 85.56 0.47 1.15 16 23 N -0.54 -10.80 4.46 -899.78 -4.01 -14.81 16 24 C 0.02 0.38 5.29 86.32 0.46 0.84 16 25 C 0.07 1.26 7.01 72.02 0.50 1.77 16 26 O -0.40 -8.06 10.83 -148.98 -1.61 -9.68 16 27 C 0.06 0.93 7.01 72.01 0.50 1.43 16 28 C 0.02 0.29 5.64 86.31 0.49 0.77 16 29 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.38 19.77 6.85 -92.71 -0.63 19.14 16 31 H 0.03 0.99 7.61 -2.39 -0.02 0.97 16 32 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.05 1.60 7.18 -2.39 -0.02 1.58 16 34 H 0.07 1.61 6.50 -2.39 -0.02 1.60 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.12 7.61 -2.38 -0.02 1.10 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.41 7.78 6.67 -92.71 -0.62 7.16 16 42 H 0.12 1.79 8.04 -2.38 -0.02 1.77 16 43 H 0.09 1.14 8.12 -2.39 -0.02 1.12 16 44 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 2.10 5.88 -2.38 -0.01 2.09 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 48 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.10 1.23 8.09 -2.38 -0.02 1.21 16 51 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.03 389.54 -1.52 -71.55 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.34 Total: 35.24 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 5.61 Total: 2.06 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -7.16 Total: -129.25 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -1.66 Total: -27.59 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.03 -1.52 -71.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.690 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds