Wall clock time and date at job start Tue Mar 31 2020 14:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00483 * 2 1 4 4 H 1.48495 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46963 * 299.99910 * 3 2 1 6 6 H 1.48504 * 109.46911 * 59.99631 * 3 2 1 7 7 C 1.38814 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00477 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00118 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46896 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47429 * 305.00172 * 11 10 9 13 13 C 1.53003 * 109.47172 * 65.00255 * 11 10 9 14 14 C 1.52994 * 109.46878 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47288 * 299.99782 * 14 13 11 16 16 C 1.53002 * 109.46831 * 60.00645 * 15 14 13 17 17 C 1.53000 * 109.46592 * 299.99420 * 16 15 14 18 18 H 1.08993 * 109.47525 * 300.00243 * 17 16 15 19 19 N 1.46507 * 109.47013 * 180.02562 * 17 16 15 20 20 C 1.34774 * 120.00037 * 84.99540 * 19 17 16 21 21 O 1.21279 * 120.00037 * 0.02562 * 20 19 17 22 22 C 1.50699 * 120.00074 * 180.02562 * 20 19 17 23 23 N 1.46900 * 109.47258 * 186.28194 * 22 20 19 24 24 C 1.47022 * 110.99712 * 66.36394 * 23 22 20 25 25 C 1.53099 * 109.25277 * 182.39458 * 24 23 22 26 26 O 1.43017 * 109.25964 * 303.14675 * 25 24 23 27 27 C 1.43016 * 113.73606 * 58.67722 * 26 25 24 28 28 C 1.47009 * 111.00173 * 189.99811 * 23 22 20 29 29 H 0.97004 * 119.99225 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99645 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46684 * 60.00256 * 10 9 7 32 32 H 1.09001 * 109.47021 * 300.00217 * 10 9 7 33 33 H 1.08994 * 109.46922 * 299.99892 * 13 11 10 34 34 H 1.09003 * 109.46828 * 59.99604 * 13 11 10 35 35 H 1.09003 * 109.47368 * 60.00359 * 14 13 11 36 36 H 1.09006 * 109.46617 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.46655 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.46908 * 300.00089 * 15 14 13 39 39 H 1.08998 * 109.46707 * 180.02562 * 16 15 14 40 40 H 1.08993 * 109.47384 * 59.99749 * 16 15 14 41 41 H 0.97003 * 119.99729 * 265.00420 * 19 17 16 42 42 H 1.09001 * 109.46858 * 66.28662 * 22 20 19 43 43 H 1.09002 * 109.47207 * 306.28322 * 22 20 19 44 44 H 1.08996 * 109.50717 * 62.45855 * 24 23 22 45 45 H 1.09001 * 109.53845 * 302.34703 * 24 23 22 46 46 H 1.08999 * 109.50262 * 183.21909 * 25 24 23 47 47 H 1.09000 * 109.51117 * 63.08961 * 25 24 23 48 48 H 1.08992 * 109.50953 * 61.26063 * 27 26 25 49 49 H 1.08998 * 109.50800 * 181.39949 * 27 26 25 50 50 H 1.09003 * 109.50695 * 297.54529 * 28 23 22 51 51 H 1.09000 * 109.50834 * 57.67588 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 1 0.3790 -4.7130 0.8414 13 6 0.2692 -4.8109 -1.3078 14 6 -0.7246 -5.9741 -1.3087 15 6 0.0365 -7.2954 -1.1832 16 6 0.8307 -7.3042 0.1245 17 6 1.8246 -6.1411 0.1253 18 1 2.5091 -6.2474 -0.7162 19 7 2.5856 -6.1498 1.3773 20 6 3.6853 -6.9204 1.4921 21 8 4.0453 -7.6063 0.5589 22 6 4.4676 -6.9299 2.7800 23 7 5.6917 -7.7226 2.6036 24 6 6.6060 -7.0752 1.6514 25 6 7.8381 -7.9618 1.4522 26 8 8.4567 -8.2013 2.7193 27 6 7.5948 -8.8314 3.6708 28 6 6.3601 -7.9537 3.8924 29 1 -0.4849 0.8401 -0.0004 30 1 0.3554 -2.3880 -0.0002 31 1 2.6845 -3.7147 0.8906 32 1 2.6845 -3.7147 -0.8894 33 1 -0.2726 -3.8695 -1.3974 34 1 0.9538 -4.9176 -2.1493 35 1 -1.4092 -5.8677 -0.4671 36 1 -1.2901 -5.9680 -2.2405 37 1 -0.6716 -8.1241 -1.1843 38 1 0.7210 -7.4017 -2.0248 39 1 1.3733 -8.2453 0.2137 40 1 0.1462 -7.1979 0.9660 41 1 2.2978 -5.6010 2.1236 42 1 3.8604 -7.3704 3.5708 43 1 4.7325 -5.9080 3.0518 44 1 6.9143 -6.1063 2.0442 45 1 6.0992 -6.9364 0.6964 46 1 8.5447 -7.4596 0.7914 47 1 7.5360 -8.9108 1.0094 48 1 7.2856 -9.8057 3.2925 49 1 8.1253 -8.9582 4.6145 50 1 6.6645 -6.9988 4.3210 51 1 5.6735 -8.4567 4.5734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:39 Heat of formation + Delta-G solvation = -78.082898 kcal Electronic energy + Delta-G solvation = -28835.097440 eV Core-core repulsion = 24962.005534 eV Total energy + Delta-G solvation = -3873.091906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.39080 -39.47485 -38.12482 -35.64796 -34.63921 -34.07586 -31.91545 -31.38872 -30.24120 -29.60800 -28.57866 -25.50590 -24.90683 -24.24289 -23.05118 -22.11190 -20.68435 -20.65421 -20.34196 -19.59927 -17.43263 -17.01697 -16.78116 -16.30442 -15.96421 -15.71589 -15.28389 -14.92358 -14.84937 -14.50500 -14.36970 -14.07999 -14.00788 -13.72802 -13.42034 -13.27942 -13.06391 -12.74702 -12.52465 -12.43268 -12.24018 -11.84461 -11.61467 -11.56277 -11.49463 -11.08570 -10.91608 -10.90105 -10.80422 -10.73604 -10.39504 -10.22532 -10.12252 -10.02866 -9.96275 -9.67258 -9.55348 -8.94019 -8.83632 -8.61501 -6.94298 -5.79895 -3.08121 2.67861 2.98114 3.40641 3.46810 3.48681 3.59132 3.72731 4.53810 4.58108 4.64682 4.74887 4.81707 4.86884 4.90809 4.98301 5.01732 5.08633 5.13604 5.17195 5.25410 5.30249 5.36186 5.42967 5.52269 5.55334 5.58529 5.63416 5.67349 5.71303 5.74611 5.74987 5.89437 6.10330 6.14271 6.20242 6.24857 6.28319 6.38871 6.53809 6.55066 6.58814 6.65613 6.67473 6.77121 6.89494 6.91015 7.59448 7.67763 8.30666 8.39342 9.50720 10.08498 10.43279 11.43001 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.003224 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.548834 B = 8681.792622 C =10899.082744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.100 4.100 12 H 0.074 0.926 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.156 3.844 18 H 0.086 0.914 19 N -0.722 5.722 20 C 0.515 3.485 21 O -0.527 6.527 22 C 0.034 3.966 23 N -0.518 5.518 24 C 0.013 3.987 25 C 0.067 3.933 26 O -0.389 6.389 27 C 0.065 3.935 28 C 0.017 3.983 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.401 0.599 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.044 0.956 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 -19.340 6.142 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.052 3.948 18 H 0.104 0.896 19 N -0.373 5.373 20 C 0.300 3.700 21 O -0.403 6.403 22 C -0.097 4.097 23 N -0.244 5.244 24 C -0.114 4.114 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.235 0.765 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.121 0.879 46 H 0.116 0.884 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.063 0.937 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.525 -20.123 5.309 22.131 hybrid contribution -0.191 2.076 0.744 2.213 sum 7.334 -18.048 6.053 20.400 Atomic orbital electron populations 1.69667 1.05072 1.25516 1.57925 1.24725 0.95518 0.97644 1.03077 0.86138 0.78801 0.84186 0.77209 1.20605 1.21842 1.21882 1.19261 0.91009 0.84208 1.42462 0.91300 1.42378 1.05824 0.99897 1.89437 1.20651 0.93026 0.85367 0.97765 1.21590 0.97697 0.93422 0.99183 0.90746 1.21490 0.97665 0.98830 0.96504 1.21599 0.98075 0.94556 1.01661 1.21486 0.98751 0.97617 0.97426 1.21883 0.97810 0.98500 0.98187 1.20977 0.92601 0.94751 0.86518 0.89561 1.46107 1.27817 1.46125 1.17238 1.20360 0.80696 0.79515 0.89433 1.90670 1.68207 1.41158 1.40216 1.22013 0.92742 0.98200 0.96787 1.61873 1.04867 1.47744 1.09872 1.22934 0.94016 0.95821 0.98659 1.22655 0.93728 0.99320 0.85318 1.87974 1.38653 1.80727 1.23349 1.22630 0.90083 0.95311 0.93156 1.22831 0.96950 1.00127 0.91224 0.93577 0.78216 0.96487 0.96493 0.90259 0.92078 0.92043 0.92111 0.92208 0.91933 0.91810 0.91991 0.76466 0.87691 0.91651 0.94162 0.87949 0.88396 0.92001 0.92192 0.88464 0.93734 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.58 9.99 -15.05 -0.15 -6.73 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.89 5.33 -59.91 -0.32 -18.20 16 10 C 0.16 3.09 5.56 -4.04 -0.02 3.07 16 11 C -0.10 -1.51 1.80 -90.62 -0.16 -1.67 16 12 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.60 5.08 -26.73 -0.14 -1.74 16 14 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 16 C -0.13 -1.50 5.49 -26.73 -0.15 -1.64 16 17 C 0.16 2.09 1.90 -67.93 -0.13 1.97 16 18 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 19 N -0.72 -8.75 4.31 -53.80 -0.23 -8.98 16 20 C 0.51 6.61 7.37 -10.99 -0.08 6.53 16 21 O -0.53 -8.49 14.34 5.56 0.08 -8.41 16 22 C 0.03 0.34 5.45 -4.98 -0.03 0.31 16 23 N -0.52 -5.67 4.42 -235.74 -1.04 -6.71 16 24 C 0.01 0.16 5.30 -3.71 -0.02 0.14 16 25 C 0.07 0.70 7.01 37.21 0.26 0.96 16 26 O -0.39 -4.32 10.83 -35.23 -0.38 -4.70 16 27 C 0.07 0.56 7.01 37.21 0.26 0.82 16 28 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 29 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 31 H 0.02 0.33 7.31 -51.93 -0.38 -0.05 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.40 4.27 8.40 -40.82 -0.34 3.93 16 42 H 0.11 0.83 8.04 -51.93 -0.42 0.41 16 43 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 1.37 6.11 -51.93 -0.32 1.05 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -32.41 394.03 -10.28 -42.68 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -9.23 Total: 9.64 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.79 Total: -1.46 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.87 Total: -60.93 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.30 Total: -13.11 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.41 -10.28 -42.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.398 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds