Wall clock time and date at job start Tue Mar 31 2020 14:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00483 * 2 1 4 4 H 1.48495 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46963 * 299.99910 * 3 2 1 6 6 H 1.48504 * 109.46911 * 59.99631 * 3 2 1 7 7 C 1.38814 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00477 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00118 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46896 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47429 * 305.00172 * 11 10 9 13 13 C 1.53003 * 109.47172 * 65.00255 * 11 10 9 14 14 C 1.52994 * 109.46878 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47288 * 299.99782 * 14 13 11 16 16 C 1.53002 * 109.46831 * 60.00645 * 15 14 13 17 17 C 1.53000 * 109.46592 * 299.99420 * 16 15 14 18 18 H 1.08993 * 109.47525 * 300.00243 * 17 16 15 19 19 N 1.46507 * 109.47013 * 180.02562 * 17 16 15 20 20 C 1.34774 * 120.00037 * 84.99540 * 19 17 16 21 21 O 1.21279 * 120.00037 * 0.02562 * 20 19 17 22 22 C 1.50699 * 120.00074 * 180.02562 * 20 19 17 23 23 N 1.46900 * 109.47258 * 186.28194 * 22 20 19 24 24 C 1.47022 * 110.99712 * 66.36394 * 23 22 20 25 25 C 1.53099 * 109.25277 * 182.39458 * 24 23 22 26 26 O 1.43017 * 109.25964 * 303.14675 * 25 24 23 27 27 C 1.43016 * 113.73606 * 58.67722 * 26 25 24 28 28 C 1.47009 * 111.00173 * 189.99811 * 23 22 20 29 29 H 0.97004 * 119.99225 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99645 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46684 * 60.00256 * 10 9 7 32 32 H 1.09001 * 109.47021 * 300.00217 * 10 9 7 33 33 H 1.08994 * 109.46922 * 299.99892 * 13 11 10 34 34 H 1.09003 * 109.46828 * 59.99604 * 13 11 10 35 35 H 1.09003 * 109.47368 * 60.00359 * 14 13 11 36 36 H 1.09006 * 109.46617 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.46655 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.46908 * 300.00089 * 15 14 13 39 39 H 1.08998 * 109.46707 * 180.02562 * 16 15 14 40 40 H 1.08993 * 109.47384 * 59.99749 * 16 15 14 41 41 H 0.97003 * 119.99729 * 265.00420 * 19 17 16 42 42 H 1.09001 * 109.46858 * 66.28662 * 22 20 19 43 43 H 1.09002 * 109.47207 * 306.28322 * 22 20 19 44 44 H 1.08996 * 109.50717 * 62.45855 * 24 23 22 45 45 H 1.09001 * 109.53845 * 302.34703 * 24 23 22 46 46 H 1.08999 * 109.50262 * 183.21909 * 25 24 23 47 47 H 1.09000 * 109.51117 * 63.08961 * 25 24 23 48 48 H 1.08992 * 109.50953 * 61.26063 * 27 26 25 49 49 H 1.08998 * 109.50800 * 181.39949 * 27 26 25 50 50 H 1.09003 * 109.50695 * 297.54529 * 28 23 22 51 51 H 1.09000 * 109.50834 * 57.67588 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 1 0.3790 -4.7130 0.8414 13 6 0.2692 -4.8109 -1.3078 14 6 -0.7246 -5.9741 -1.3087 15 6 0.0365 -7.2954 -1.1832 16 6 0.8307 -7.3042 0.1245 17 6 1.8246 -6.1411 0.1253 18 1 2.5091 -6.2474 -0.7162 19 7 2.5856 -6.1498 1.3773 20 6 3.6853 -6.9204 1.4921 21 8 4.0453 -7.6063 0.5589 22 6 4.4676 -6.9299 2.7800 23 7 5.6917 -7.7226 2.6036 24 6 6.6060 -7.0752 1.6514 25 6 7.8381 -7.9618 1.4522 26 8 8.4567 -8.2013 2.7193 27 6 7.5948 -8.8314 3.6708 28 6 6.3601 -7.9537 3.8924 29 1 -0.4849 0.8401 -0.0004 30 1 0.3554 -2.3880 -0.0002 31 1 2.6845 -3.7147 0.8906 32 1 2.6845 -3.7147 -0.8894 33 1 -0.2726 -3.8695 -1.3974 34 1 0.9538 -4.9176 -2.1493 35 1 -1.4092 -5.8677 -0.4671 36 1 -1.2901 -5.9680 -2.2405 37 1 -0.6716 -8.1241 -1.1843 38 1 0.7210 -7.4017 -2.0248 39 1 1.3733 -8.2453 0.2137 40 1 0.1462 -7.1979 0.9660 41 1 2.2978 -5.6010 2.1236 42 1 3.8604 -7.3704 3.5708 43 1 4.7325 -5.9080 3.0518 44 1 6.9143 -6.1063 2.0442 45 1 6.0992 -6.9364 0.6964 46 1 8.5447 -7.4596 0.7914 47 1 7.5360 -8.9108 1.0094 48 1 7.2856 -9.8057 3.2925 49 1 8.1253 -8.9582 4.6145 50 1 6.6645 -6.9988 4.3210 51 1 5.6735 -8.4567 4.5734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754340348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:37 Heat of formation + Delta-G solvation = -101.229490 kcal Electronic energy + Delta-G solvation = -28836.101152 eV Core-core repulsion = 24962.005534 eV Total energy + Delta-G solvation = -3874.095618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.38962 -40.39363 -39.22089 -36.55285 -36.36265 -35.15365 -33.69422 -32.13978 -31.22843 -31.21603 -29.55394 -27.02102 -25.94694 -25.01185 -24.73542 -23.25888 -21.99294 -21.51973 -21.34952 -20.71305 -19.27714 -18.04583 -17.78175 -17.12123 -16.99762 -16.75061 -16.53496 -16.05614 -15.90106 -15.69849 -15.48637 -15.35231 -15.15068 -14.86362 -14.83828 -14.60137 -14.28495 -14.09333 -13.62796 -13.36478 -13.26932 -13.06459 -12.93388 -12.77264 -12.66914 -12.42184 -12.29514 -12.16051 -12.07708 -11.92736 -11.86951 -11.57601 -11.50708 -11.34176 -11.12797 -10.98261 -10.87974 -10.53228 -9.94884 -9.43182 -8.99768 -7.96739 -5.24761 1.45833 1.46524 1.56232 1.67861 2.05741 2.54080 2.79063 2.96569 3.36860 3.55335 3.72827 3.79964 3.93053 3.94252 3.97799 4.09460 4.11267 4.19253 4.25858 4.27245 4.37498 4.39504 4.45407 4.46889 4.50544 4.53885 4.57947 4.60791 4.72872 4.79458 4.85375 4.86483 4.88650 4.98949 5.04552 5.12715 5.17478 5.24811 5.29964 5.31665 5.43782 5.47385 5.52443 5.62727 5.75097 5.89481 6.15456 6.25993 6.61854 7.31435 7.32989 8.08291 8.32909 9.26635 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.003224 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.548834 B = 8681.792622 C =10899.082744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.084 4.084 12 H 0.079 0.921 13 C -0.105 4.105 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.116 4.116 17 C 0.165 3.835 18 H 0.064 0.936 19 N -0.717 5.717 20 C 0.513 3.487 21 O -0.563 6.563 22 C 0.038 3.962 23 N -0.533 5.533 24 C 0.017 3.983 25 C 0.069 3.931 26 O -0.404 6.404 27 C 0.059 3.941 28 C 0.018 3.982 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.024 0.976 32 H 0.002 0.998 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.410 0.590 42 H 0.134 0.866 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.121 0.879 50 H 0.045 0.955 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -20.403 7.628 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.104 4.104 12 H 0.098 0.902 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.155 4.155 17 C 0.060 3.940 18 H 0.082 0.918 19 N -0.369 5.369 20 C 0.299 3.701 21 O -0.441 6.441 22 C -0.093 4.093 23 N -0.258 5.258 24 C -0.111 4.111 25 C -0.007 4.007 26 O -0.323 6.323 27 C -0.017 4.017 28 C -0.109 4.109 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.042 0.958 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.246 0.754 42 H 0.152 0.848 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.139 0.861 50 H 0.063 0.937 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.745 -21.206 6.818 23.583 hybrid contribution -0.216 2.363 0.271 2.388 sum 7.528 -18.843 7.089 21.494 Atomic orbital electron populations 1.69807 1.06421 1.25990 1.59408 1.25492 0.96376 1.00822 1.03663 0.85135 0.78131 0.80091 0.76774 1.19429 1.22089 1.21763 1.19601 0.91277 0.85521 1.41274 0.91253 1.42528 1.05635 1.00839 1.89248 1.20752 0.93663 0.85043 0.97070 1.21424 0.96819 0.92608 0.99515 0.90242 1.21433 0.97957 0.98876 0.96086 1.21538 0.97402 0.93596 1.02565 1.21472 0.98898 0.97674 0.96842 1.21805 0.97436 0.97134 0.99110 1.20769 0.92434 0.94281 0.86545 0.91799 1.46062 1.27695 1.46135 1.16977 1.20886 0.80472 0.78686 0.90009 1.90658 1.69034 1.42727 1.41685 1.22057 0.92516 0.99002 0.95699 1.61873 1.05130 1.47834 1.11000 1.22812 0.94360 0.96010 0.97911 1.22634 0.93596 0.98949 0.85568 1.87952 1.39621 1.81024 1.23718 1.22856 0.90222 0.95032 0.93594 1.22918 0.97278 1.00387 0.90343 0.93949 0.79092 0.95819 0.97978 0.93140 0.92877 0.91345 0.91101 0.90004 0.92440 0.92287 0.90662 0.75390 0.84829 0.90790 0.94578 0.90278 0.87415 0.92541 0.92259 0.86084 0.93682 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.12 13.06 21.65 0.28 -57.84 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -36.70 5.33 -343.44 -1.83 -38.53 16 10 C 0.16 6.32 5.56 86.38 0.48 6.80 16 11 C -0.08 -2.54 1.80 -10.79 -0.02 -2.56 16 12 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.11 -3.18 5.08 30.59 0.16 -3.02 16 14 C -0.11 -2.62 5.92 30.59 0.18 -2.43 16 15 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 16 C -0.12 -2.57 5.49 30.60 0.17 -2.40 16 17 C 0.17 4.32 1.90 44.99 0.09 4.41 16 18 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 19 N -0.72 -16.62 4.31 -442.53 -1.91 -18.53 16 20 C 0.51 12.74 7.37 87.66 0.65 13.38 16 21 O -0.56 -18.19 14.34 -3.03 -0.04 -18.24 16 22 C 0.04 0.69 5.45 85.56 0.47 1.16 16 23 N -0.53 -10.94 4.42 -899.76 -3.98 -14.92 16 24 C 0.02 0.40 5.30 86.31 0.46 0.85 16 25 C 0.07 1.44 7.01 72.02 0.50 1.94 16 26 O -0.40 -8.56 10.83 -148.98 -1.61 -10.17 16 27 C 0.06 0.91 7.01 72.02 0.50 1.41 16 28 C 0.02 0.27 5.64 86.32 0.49 0.76 16 29 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.38 19.67 6.85 -92.71 -0.63 19.03 16 31 H 0.02 0.91 7.31 -2.39 -0.02 0.89 16 32 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.05 1.82 7.18 -2.39 -0.02 1.80 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.41 8.06 8.40 -92.71 -0.78 7.28 16 42 H 0.13 1.67 8.04 -2.39 -0.02 1.66 16 43 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 44 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 2.18 6.11 -2.39 -0.01 2.17 16 46 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.11 1.13 8.09 -2.39 -0.02 1.11 16 Total: -1.00 -70.09 394.03 -1.96 -72.05 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.50 Total: 36.42 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.60 Total: 1.85 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -7.43 Total: -129.81 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -1.66 Total: -28.41 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -70.09 -1.96 -72.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.182 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds