Wall clock time and date at job start Tue Mar 31 2020 14:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99545 * 2 1 4 4 H 1.48506 * 109.47118 * 269.99760 * 3 2 1 5 5 H 1.48497 * 109.47319 * 29.99784 * 3 2 1 6 6 H 1.48502 * 109.47135 * 149.99854 * 3 2 1 7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00135 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47578 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47103 * 54.99567 * 11 10 9 13 13 C 1.52999 * 109.46961 * 295.00174 * 11 10 9 14 14 C 1.53005 * 109.47159 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 11 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 13 17 17 C 1.52997 * 109.47482 * 174.99814 * 11 10 9 18 18 H 1.09002 * 109.47153 * 59.99783 * 17 11 10 19 19 N 1.46500 * 109.47007 * 299.99872 * 17 11 10 20 20 C 1.34779 * 119.99793 * 154.99772 * 19 17 11 21 21 O 1.21279 * 120.00185 * 0.02562 * 20 19 17 22 22 C 1.50702 * 119.99614 * 179.97438 * 20 19 17 23 23 N 1.46898 * 109.46832 * 180.02562 * 22 20 19 24 24 C 1.47014 * 111.00009 * 293.63500 * 23 22 20 25 25 C 1.53097 * 109.26272 * 177.60760 * 24 23 22 26 26 O 1.43022 * 109.25669 * 56.84805 * 25 24 23 27 27 C 1.43015 * 113.73718 * 301.33216 * 26 25 24 28 28 C 1.47016 * 110.99968 * 170.00549 * 23 22 20 29 29 H 0.97001 * 120.00806 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00328 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47096 * 59.99270 * 10 9 7 32 32 H 1.09002 * 109.46667 * 299.99558 * 10 9 7 33 33 H 1.09002 * 109.46716 * 299.99630 * 13 11 10 34 34 H 1.09000 * 109.47486 * 59.99547 * 13 11 10 35 35 H 1.09001 * 109.46812 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.46935 * 299.99411 * 14 13 11 37 37 H 1.09002 * 109.46695 * 59.99734 * 15 14 13 38 38 H 1.08993 * 109.47194 * 179.97438 * 15 14 13 39 39 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 40 40 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 41 41 H 0.97004 * 120.00223 * 334.99863 * 19 17 11 42 42 H 1.09002 * 109.47423 * 300.00169 * 22 20 19 43 43 H 1.09002 * 109.46795 * 60.00420 * 22 20 19 44 44 H 1.09002 * 109.51156 * 297.54520 * 24 23 22 45 45 H 1.09002 * 109.50928 * 57.67687 * 24 23 22 46 46 H 1.09001 * 109.50575 * 296.91727 * 25 24 23 47 47 H 1.08995 * 109.51105 * 176.78071 * 25 24 23 48 48 H 1.08996 * 109.50949 * 298.73302 * 27 26 25 49 49 H 1.09008 * 109.50735 * 178.60017 * 27 26 25 50 50 H 1.09004 * 109.50221 * 302.32389 * 28 23 22 51 51 H 1.08995 * 109.50801 * 62.41221 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0641 -4.8197 0.0021 12 1 0.3803 -4.7134 -0.8400 13 6 0.2688 -4.8103 1.3091 14 6 -0.7249 -5.9737 1.3098 15 6 0.0365 -7.2950 1.1855 16 6 0.8317 -7.3043 -0.1216 17 6 1.8250 -6.1412 -0.1225 18 1 2.5089 -6.2475 0.7196 19 7 2.5865 -6.1501 -1.3741 20 6 3.6862 -6.9209 -1.4883 21 8 4.0451 -7.6074 -0.5552 22 6 4.4691 -6.9305 -2.7760 23 7 5.6126 -7.8436 -2.6469 24 6 6.5799 -7.3403 -1.6608 25 6 7.7227 -8.3486 -1.5143 26 8 8.3209 -8.5728 -2.7939 27 6 7.4071 -9.0639 -3.7785 28 6 6.2612 -8.0627 -3.9479 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6843 -3.7140 0.8921 32 1 2.6855 -3.7148 -0.8879 33 1 0.9527 -4.9166 2.1512 34 1 -0.2733 -3.8689 1.3979 35 1 -1.2911 -5.9673 2.2412 36 1 -1.4088 -5.8679 0.4677 37 1 0.7204 -7.4007 2.0277 38 1 -0.6714 -8.1237 1.1865 39 1 0.1479 -7.1984 -0.9636 40 1 1.3745 -8.2454 -0.2099 41 1 2.2992 -5.6013 -2.1205 42 1 3.8263 -7.2666 -3.5896 43 1 4.8295 -5.9242 -2.9895 44 1 6.9795 -6.3839 -1.9981 45 1 6.0845 -7.2096 -0.6988 46 1 7.3310 -9.2887 -1.1259 47 1 8.4708 -7.9535 -0.8271 48 1 7.0063 -10.0248 -3.4559 49 1 7.9270 -9.1861 -4.7287 50 1 5.5330 -8.4594 -4.6554 51 1 6.6549 -7.1178 -4.3221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:43 Heat of formation + Delta-G solvation = -77.676982 kcal Electronic energy + Delta-G solvation = -28811.686016 eV Core-core repulsion = 24938.611711 eV Total energy + Delta-G solvation = -3873.074304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.39909 -39.47363 -38.12985 -35.64212 -34.63877 -34.08487 -31.91597 -31.37936 -30.24810 -29.60772 -28.57486 -25.50449 -24.90471 -24.23557 -23.05008 -22.11033 -20.68250 -20.65499 -20.35237 -19.60196 -17.43297 -17.02023 -16.77265 -16.28853 -15.96560 -15.72042 -15.28650 -14.92424 -14.87263 -14.51238 -14.37581 -14.07106 -14.00650 -13.72194 -13.42101 -13.28219 -13.05812 -12.75842 -12.50904 -12.41553 -12.24429 -11.84573 -11.61168 -11.56116 -11.50440 -11.08255 -10.91157 -10.89525 -10.80405 -10.73114 -10.38974 -10.24378 -10.12526 -10.03556 -9.97686 -9.66549 -9.53524 -8.93832 -8.83776 -8.60839 -6.94316 -5.79581 -3.07927 2.67471 2.97807 3.40950 3.46670 3.48144 3.59305 3.73346 4.53871 4.58092 4.64883 4.75411 4.81788 4.86902 4.90932 4.98383 5.02278 5.08658 5.14134 5.16553 5.25454 5.30439 5.36209 5.43373 5.52418 5.55428 5.58555 5.63570 5.67453 5.73109 5.74894 5.76111 5.89627 6.10435 6.14498 6.20315 6.25035 6.28402 6.38994 6.54589 6.55290 6.58786 6.66305 6.67535 6.77146 6.89556 6.91295 7.59008 7.67284 8.30113 8.39569 9.50880 10.08659 10.43500 11.43246 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.003144 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.326696 B = 8903.978621 C =11028.368671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.100 4.100 12 H 0.074 0.926 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.156 3.844 18 H 0.086 0.914 19 N -0.721 5.721 20 C 0.516 3.484 21 O -0.528 6.528 22 C 0.033 3.967 23 N -0.519 5.519 24 C 0.011 3.989 25 C 0.067 3.933 26 O -0.389 6.389 27 C 0.066 3.934 28 C 0.016 3.984 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.401 0.599 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.107 0.893 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -19.516 -6.142 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.052 3.948 18 H 0.104 0.896 19 N -0.372 5.372 20 C 0.301 3.699 21 O -0.404 6.404 22 C -0.098 4.098 23 N -0.244 5.244 24 C -0.116 4.116 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.012 4.012 28 C -0.112 4.112 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.236 0.764 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.105 0.895 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.321 -20.305 -5.323 22.231 hybrid contribution -0.097 2.101 -0.722 2.224 sum 7.225 -18.204 -6.044 20.496 Atomic orbital electron populations 1.69649 1.05075 1.25651 1.57843 1.24719 0.95511 0.97636 1.03056 0.86209 0.78701 0.83906 0.77500 1.21757 1.21749 1.20786 1.19211 0.90980 0.84221 1.42597 0.91356 1.42366 1.05816 0.99884 1.89451 1.20650 0.93027 0.85370 0.97768 1.21589 0.97698 0.93419 0.99189 0.90747 1.21492 0.97660 0.98827 0.96509 1.21599 0.98075 0.94557 1.01662 1.21484 0.98745 0.97617 0.97431 1.21874 0.97809 0.98503 0.98187 1.20966 0.92599 0.94755 0.86521 0.89563 1.46098 1.27765 1.46098 1.17269 1.20356 0.80691 0.79444 0.89396 1.90650 1.68212 1.41224 1.40314 1.22008 0.93918 0.96867 0.96982 1.61883 1.08064 1.46591 1.07863 1.22990 0.93469 0.96565 0.98608 1.22659 0.94728 0.98600 0.85037 1.87973 1.35814 1.86178 1.20782 1.22628 0.89925 0.96046 0.92561 1.22834 0.97380 0.99719 0.91238 0.93517 0.78214 0.96492 0.96488 0.92080 0.90257 0.92112 0.92045 0.91937 0.92207 0.91997 0.91794 0.76448 0.87770 0.91509 0.94287 0.87469 0.92040 0.88429 0.92210 0.88478 0.89525 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.88 5.33 -59.91 -0.32 -18.20 16 10 C 0.16 3.09 5.56 -4.04 -0.02 3.07 16 11 C -0.10 -1.51 1.80 -90.63 -0.16 -1.67 16 12 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.60 5.08 -26.73 -0.14 -1.74 16 14 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 16 C -0.13 -1.50 5.49 -26.76 -0.15 -1.64 16 17 C 0.16 2.09 1.90 -67.96 -0.13 1.96 16 18 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 19 N -0.72 -8.72 4.31 -53.83 -0.23 -8.95 16 20 C 0.52 6.60 7.50 -10.98 -0.08 6.52 16 21 O -0.53 -8.44 14.01 5.56 0.08 -8.36 16 22 C 0.03 0.34 5.45 -4.98 -0.03 0.31 16 23 N -0.52 -5.65 4.46 -235.74 -1.05 -6.70 16 24 C 0.01 0.13 5.29 -3.71 -0.02 0.11 16 25 C 0.07 0.69 7.01 37.21 0.26 0.95 16 26 O -0.39 -4.31 10.83 -35.23 -0.38 -4.69 16 27 C 0.07 0.56 7.01 37.21 0.26 0.82 16 28 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.33 7.31 -51.93 -0.38 -0.05 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.40 4.26 8.40 -40.82 -0.34 3.92 16 42 H 0.10 0.82 8.04 -51.93 -0.42 0.40 16 43 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.11 1.43 5.88 -51.93 -0.31 1.12 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 50 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 51 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -32.32 393.64 -10.28 -42.60 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -9.22 Total: 9.71 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.79 Total: -1.51 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.88 Total: -60.90 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.30 Total: -13.05 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.32 -10.28 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.079 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds