Wall clock time and date at job start Tue Mar 31 2020 14:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48501 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47088 * 299.99706 * 3 2 1 6 6 H 1.48496 * 109.47096 * 59.99724 * 3 2 1 7 7 C 1.38812 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00635 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00629 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47707 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46652 * 304.99932 * 11 10 9 13 13 C 1.53000 * 109.46886 * 64.99587 * 11 10 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47127 * 300.00449 * 14 13 11 16 16 C 1.52997 * 109.47164 * 59.99836 * 15 14 13 17 17 C 1.52996 * 109.47302 * 184.99804 * 11 10 9 18 18 H 1.09004 * 109.47108 * 59.99942 * 17 11 10 19 19 N 1.46500 * 109.47368 * 299.99898 * 17 11 10 20 20 C 1.34773 * 120.00050 * 155.00010 * 19 17 11 21 21 O 1.21285 * 120.00098 * 0.02562 * 20 19 17 22 22 C 1.50699 * 119.99932 * 180.02562 * 20 19 17 23 23 N 1.46905 * 109.47077 * 180.02562 * 22 20 19 24 24 C 1.47018 * 110.99750 * 293.63438 * 23 22 20 25 25 C 1.53101 * 109.25285 * 177.60633 * 24 23 22 26 26 O 1.43010 * 109.25976 * 56.85158 * 25 24 23 27 27 C 1.43013 * 113.73885 * 301.32805 * 26 25 24 28 28 C 1.47009 * 110.99762 * 169.99948 * 23 22 20 29 29 H 0.97007 * 119.99734 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99772 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47181 * 59.99960 * 10 9 7 32 32 H 1.09008 * 109.46870 * 300.00081 * 10 9 7 33 33 H 1.09002 * 109.47398 * 300.00496 * 13 11 10 34 34 H 1.09001 * 109.47194 * 60.00677 * 13 11 10 35 35 H 1.08998 * 109.47533 * 59.99948 * 14 13 11 36 36 H 1.08996 * 109.47853 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 38 38 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47045 * 180.02562 * 16 15 14 40 40 H 1.09001 * 109.47375 * 59.99966 * 16 15 14 41 41 H 0.96994 * 119.99644 * 335.00016 * 19 17 11 42 42 H 1.09002 * 109.47015 * 299.99556 * 22 20 19 43 43 H 1.08994 * 109.47030 * 60.00158 * 22 20 19 44 44 H 1.08989 * 109.50644 * 297.54221 * 24 23 22 45 45 H 1.08997 * 109.50722 * 57.67395 * 24 23 22 46 46 H 1.08998 * 109.50894 * 296.91471 * 25 24 23 47 47 H 1.09003 * 109.53879 * 176.80431 * 25 24 23 48 48 H 1.09007 * 109.50329 * 298.73602 * 27 26 25 49 49 H 1.08999 * 109.54771 * 178.62917 * 27 26 25 50 50 H 1.08994 * 109.50814 * 302.32486 * 28 23 22 51 51 H 1.08999 * 109.50864 * 62.41642 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 1.0635 -4.8198 0.0008 12 1 0.3785 -4.7127 0.8418 13 6 0.2702 -4.8115 -1.3075 14 6 -0.7245 -5.9740 -1.3081 15 6 0.0357 -7.2957 -1.1809 16 6 0.8290 -7.3040 0.1273 17 6 1.8242 -6.1412 0.1276 18 1 2.3893 -6.1471 1.0597 19 7 2.7449 -6.2852 -1.0027 20 6 3.8441 -7.0558 -0.8826 21 8 4.0707 -7.6304 0.1612 22 6 4.7915 -7.2034 -2.0451 23 7 5.9007 -8.0879 -1.6637 24 6 6.7318 -7.4705 -0.6199 25 6 7.8370 -8.4478 -0.2108 26 8 8.5986 -8.8091 -1.3661 27 6 7.8206 -9.4137 -2.4026 28 6 6.7151 -8.4463 -2.8339 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 0.0005 31 1 2.6837 -3.7143 0.8921 32 1 2.6852 -3.7150 -0.8879 33 1 -0.2716 -3.8700 -1.3979 34 1 0.9553 -4.9186 -2.1485 35 1 -1.4095 -5.8666 -0.4672 36 1 -1.2894 -5.9684 -2.2403 37 1 0.7208 -7.4033 -2.0219 38 1 -0.6730 -8.1239 -1.1809 39 1 1.3709 -8.2454 0.2177 40 1 0.1440 -7.1965 0.9683 41 1 2.5635 -5.8259 -1.8375 42 1 4.2603 -7.6330 -2.8945 43 1 5.1848 -6.2247 -2.3198 44 1 7.1799 -6.5550 -1.0056 45 1 6.1135 -7.2368 0.2468 46 1 7.3899 -9.3415 0.2245 47 1 8.4900 -7.9737 0.5220 48 1 7.3729 -10.3356 -2.0310 49 1 8.4610 -9.6382 -3.2555 50 1 6.0847 -8.9248 -3.5833 51 1 7.1624 -7.5462 -3.2555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:49 Heat of formation + Delta-G solvation = -74.715309 kcal Electronic energy + Delta-G solvation = -29034.027562 eV Core-core repulsion = 25161.081686 eV Total energy + Delta-G solvation = -3872.945877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.50463 -39.57533 -38.10454 -35.62238 -34.66813 -33.61795 -31.94492 -31.38237 -30.38146 -29.64183 -28.75665 -25.51664 -24.91085 -24.23909 -23.01617 -22.22911 -21.12615 -20.66458 -20.39267 -18.93390 -17.53609 -17.02119 -16.76732 -16.32030 -15.79747 -15.59656 -15.27090 -15.13821 -14.97728 -14.58369 -14.52642 -14.02106 -13.97973 -13.68397 -13.43745 -13.24910 -13.09072 -12.72748 -12.55511 -12.31604 -12.09034 -11.96291 -11.67944 -11.61023 -11.52653 -11.39185 -10.91885 -10.91320 -10.81304 -10.74672 -10.36271 -10.19731 -10.08646 -9.98821 -9.86268 -9.64766 -9.58802 -8.93945 -8.84438 -8.61060 -6.94240 -5.79668 -3.07917 2.68547 2.99554 3.40848 3.46931 3.48855 3.59509 3.73681 4.54213 4.58350 4.65188 4.75106 4.82743 4.87465 4.89387 4.91391 4.99473 5.01858 5.13405 5.15729 5.24914 5.30033 5.33105 5.43071 5.51954 5.54988 5.59746 5.62837 5.67756 5.73929 5.74695 5.75474 5.82945 6.04839 6.13445 6.15473 6.22129 6.26907 6.36978 6.46895 6.54990 6.61413 6.65833 6.66293 6.78536 6.86023 6.91107 7.59810 7.67851 8.31239 8.39536 9.50904 10.08713 10.43395 11.43246 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.011346 B = 0.003113 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.243764 B = 8991.399193 C =10832.724721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.085 0.915 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.157 3.843 18 H 0.086 0.914 19 N -0.716 5.716 20 C 0.515 3.485 21 O -0.528 6.528 22 C 0.033 3.967 23 N -0.518 5.518 24 C 0.012 3.988 25 C 0.067 3.933 26 O -0.389 6.389 27 C 0.066 3.934 28 C 0.017 3.983 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.400 0.600 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.108 0.892 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -20.240 -6.454 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.103 0.897 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.166 4.166 17 C 0.052 3.948 18 H 0.104 0.896 19 N -0.369 5.369 20 C 0.300 3.700 21 O -0.405 6.405 22 C -0.098 4.098 23 N -0.244 5.244 24 C -0.116 4.116 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.012 4.012 28 C -0.112 4.112 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.235 0.765 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.105 0.895 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.061 -20.931 -5.511 23.097 hybrid contribution -0.016 2.015 -0.810 2.172 sum 8.045 -18.916 -6.320 21.506 Atomic orbital electron populations 1.69666 1.05077 1.25524 1.57921 1.24725 0.95520 0.97654 1.03076 0.86135 0.78795 0.84179 0.77204 1.20604 1.21876 1.21853 1.19258 0.91007 0.84209 1.42463 0.91298 1.42376 1.05835 0.99911 1.89421 1.20626 0.92985 0.85357 0.97692 1.21628 0.97825 0.93448 0.99201 0.89701 1.21522 0.97643 0.98968 0.96588 1.21589 0.98066 0.94549 1.01646 1.21482 0.98587 0.97443 0.97708 1.21903 0.97896 0.98620 0.98204 1.20933 0.89664 0.94412 0.89762 0.89552 1.46103 1.24074 1.49546 1.17156 1.20346 0.81558 0.78749 0.89315 1.90652 1.74136 1.46107 1.29564 1.22003 0.93267 0.97305 0.97196 1.61882 1.09931 1.42825 1.09726 1.22989 0.95506 0.95944 0.97174 1.22658 0.92734 0.98022 0.87612 1.87969 1.35214 1.80510 1.27050 1.22624 0.92479 0.94993 0.91066 1.22830 0.95806 0.99574 0.92953 0.93574 0.78210 0.96550 0.96550 0.90319 0.92748 0.91918 0.92306 0.92353 0.92547 0.91727 0.91126 0.76462 0.87851 0.91593 0.94307 0.87432 0.92042 0.88425 0.92219 0.88488 0.89545 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.90 5.33 -59.91 -0.32 -18.22 16 10 C 0.16 3.10 5.42 -4.04 -0.02 3.08 16 11 C -0.10 -1.52 2.02 -90.62 -0.18 -1.71 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.52 4.90 -26.73 -0.13 -1.65 16 14 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 15 C -0.11 -1.21 5.77 -26.73 -0.15 -1.36 16 16 C -0.13 -1.49 5.61 -26.71 -0.15 -1.64 16 17 C 0.16 2.07 2.23 -67.91 -0.15 1.92 16 18 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 19 N -0.72 -8.46 3.62 -53.78 -0.19 -8.65 16 20 C 0.52 6.48 7.50 -10.99 -0.08 6.40 16 21 O -0.53 -8.36 14.01 5.55 0.08 -8.29 16 22 C 0.03 0.33 5.45 -4.97 -0.03 0.30 16 23 N -0.52 -5.58 4.46 -235.75 -1.05 -6.63 16 24 C 0.01 0.13 5.29 -3.71 -0.02 0.11 16 25 C 0.07 0.69 7.01 37.21 0.26 0.95 16 26 O -0.39 -4.28 10.83 -35.23 -0.38 -4.66 16 27 C 0.07 0.55 7.01 37.21 0.26 0.82 16 28 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.32 7.61 -51.92 -0.40 -0.08 16 33 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 34 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 7.61 -51.93 -0.39 0.20 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 4.23 6.67 -40.82 -0.27 3.96 16 42 H 0.10 0.79 8.04 -51.93 -0.42 0.38 16 43 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 44 H 0.04 0.44 8.14 -51.94 -0.42 0.02 16 45 H 0.11 1.43 5.88 -51.93 -0.31 1.12 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 51 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -32.26 389.54 -10.17 -42.44 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -9.05 Total: 9.42 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.82 Total: -1.44 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.84 Total: -60.59 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.30 Total: -12.95 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.26 -10.17 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.280 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds