Wall clock time and date at job start Tue Mar 31 2020 14:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46743 * 2 1 4 4 C 1.46710 * 119.81400 * 269.72866 * 3 2 1 5 5 C 1.53571 * 108.77672 * 108.76177 * 4 3 2 6 6 C 1.52449 * 110.10265 * 88.81182 * 5 4 3 7 7 N 1.46070 * 111.51445 * 297.25526 * 6 5 4 8 8 C 1.34777 * 119.81086 * 242.95808 * 7 6 5 9 9 O 1.21584 * 120.00369 * 354.74307 * 8 7 6 10 10 N 1.34779 * 119.99745 * 174.74147 * 8 7 6 11 11 C 1.46503 * 119.99578 * 184.96058 * 10 8 7 12 12 C 1.53006 * 109.46750 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46724 * 299.99879 * 12 11 10 14 14 C 1.52997 * 109.47218 * 59.99813 * 12 11 10 15 15 C 1.53004 * 109.46832 * 180.02562 * 12 11 10 16 16 C 1.50702 * 109.46549 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00465 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99453 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00396 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47266 * 60.00378 * 20 18 16 22 22 H 1.48504 * 109.47620 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47520 * 300.00457 * 20 18 16 24 24 C 1.46669 * 120.37648 * 62.93876 * 7 6 5 25 25 C 1.34245 * 119.81746 * 90.00163 * 3 2 1 26 26 O 1.21280 * 120.34781 * 357.09828 * 25 3 2 27 27 H 1.08999 * 109.47580 * 60.00493 * 1 2 3 28 28 H 1.09008 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47160 * 299.99643 * 1 2 3 30 30 H 1.08999 * 109.47575 * 120.00064 * 2 1 3 31 31 H 1.09000 * 109.47160 * 240.00357 * 2 1 3 32 32 H 1.09001 * 109.53657 * 228.60524 * 4 3 2 33 33 H 1.08994 * 109.53619 * 348.84967 * 4 3 2 34 34 H 1.09004 * 109.45273 * 328.57982 * 5 4 3 35 35 H 1.08998 * 109.32891 * 208.97148 * 5 4 3 36 36 H 1.09007 * 109.07485 * 176.73244 * 6 5 4 37 37 H 1.09003 * 109.01642 * 57.74544 * 6 5 4 38 38 H 0.96993 * 120.00357 * 4.96243 * 10 8 7 39 39 H 1.08991 * 109.47362 * 299.99903 * 11 10 8 40 40 H 1.09000 * 109.46905 * 60.00427 * 11 10 8 41 41 H 1.08996 * 109.47061 * 60.00677 * 13 12 11 42 42 H 1.09000 * 109.46522 * 179.97438 * 13 12 11 43 43 H 1.08997 * 109.47219 * 299.99991 * 13 12 11 44 44 H 1.09004 * 109.47049 * 60.00171 * 14 12 11 45 45 H 1.08998 * 109.46837 * 179.97438 * 14 12 11 46 46 H 1.08997 * 109.46983 * 299.99868 * 14 12 11 47 47 H 1.08996 * 109.46776 * 299.99776 * 15 12 11 48 48 H 1.09000 * 109.47130 * 59.99907 * 15 12 11 49 49 H 0.96996 * 120.00455 * 179.97438 * 19 18 16 50 50 H 1.08999 * 109.59455 * 158.24671 * 24 7 6 51 51 H 1.08998 * 109.73085 * 37.85325 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2670 2.0670 -1.2729 5 6 1.1870 3.1397 -1.4758 6 6 1.6290 4.4544 -0.8432 7 7 1.7969 4.3238 0.6019 8 6 1.0188 5.0432 1.4347 9 8 0.2468 5.8679 0.9849 10 7 1.0963 4.8484 2.7660 11 6 0.1756 5.5503 3.6638 12 6 0.4747 5.1554 5.1115 13 6 0.2947 3.6448 5.2755 14 6 1.9152 5.5378 5.4572 15 6 -0.4872 5.8879 6.0490 16 6 -0.1930 5.4984 7.4748 17 1 0.6004 4.7981 7.6906 18 6 -0.9367 6.0361 8.5037 19 7 -1.9031 6.8885 8.2410 20 14 -0.5726 5.5529 10.2710 21 1 0.8256 5.9232 10.6074 22 1 -1.5061 6.2639 11.1811 23 1 -0.7481 4.0868 10.4296 24 6 2.8072 3.4139 1.1520 25 6 2.2407 2.0106 1.1647 26 8 1.9901 1.4605 2.2161 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.2503 2.5367 -1.2478 33 1 2.2269 1.3459 -2.0893 34 1 0.2568 2.8106 -1.0124 35 1 1.0231 3.2894 -2.5430 36 1 0.8781 5.2180 -1.0469 37 1 2.5770 4.7605 -1.2857 38 1 1.7616 4.2435 3.1298 39 1 0.3041 6.6263 3.5472 40 1 -0.8506 5.2780 3.4172 41 1 0.9797 3.1226 4.6076 42 1 0.5082 3.3634 6.3067 43 1 -0.7315 3.3723 5.0291 44 1 2.0434 6.6140 5.3403 45 1 2.1280 5.2569 6.4887 46 1 2.6001 5.0156 4.7893 47 1 -0.3594 6.9640 5.9322 48 1 -1.5133 5.6150 5.8025 49 1 -2.4265 7.2665 8.9648 50 1 3.0570 3.7166 2.1688 51 1 3.7033 3.4408 0.5319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377033607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:01 Heat of formation + Delta-G solvation = -67.305775 kcal Electronic energy + Delta-G solvation = -29714.869653 eV Core-core repulsion = 25842.245078 eV Total energy + Delta-G solvation = -3872.624575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07776 -39.54121 -37.44775 -36.70298 -35.60817 -33.73839 -32.51859 -31.79166 -31.17603 -27.82885 -27.17723 -26.66629 -26.39126 -25.42080 -23.51525 -22.99765 -22.01218 -20.14850 -19.28640 -18.91257 -17.85778 -17.32077 -16.79007 -16.36680 -16.07717 -15.30093 -15.24634 -14.68633 -14.40834 -14.25986 -14.21264 -13.99363 -13.78292 -13.74283 -13.29430 -13.07163 -12.88811 -12.68093 -12.58959 -12.44911 -12.20632 -12.03084 -11.98896 -11.73010 -11.35799 -11.19150 -11.06425 -10.92453 -10.80911 -10.54360 -10.35711 -10.30944 -10.18766 -10.04310 -9.78483 -9.12433 -9.08529 -8.95495 -8.86609 -8.50187 -8.29825 -5.94112 -3.94954 2.06564 2.60888 2.86110 3.27548 3.36722 3.41448 3.43479 3.99407 4.10134 4.41166 4.47396 4.48081 4.51178 4.75288 4.85992 4.92697 4.97062 5.02404 5.12351 5.21949 5.29601 5.41377 5.42242 5.55177 5.63175 5.64365 5.72858 5.81774 5.86317 5.94933 6.16326 6.22091 6.29043 6.36275 6.37512 6.51462 6.66463 6.74351 6.81365 6.89867 7.02065 7.14986 7.19157 7.22597 7.70631 7.83706 7.85449 8.03876 8.06169 8.47360 8.69112 9.09614 9.67718 11.17429 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018993 B = 0.003011 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.835715 B = 9298.127933 C =10010.157025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.610 5.610 4 C 0.110 3.890 5 C -0.161 4.161 6 C 0.124 3.876 7 N -0.625 5.625 8 C 0.704 3.296 9 O -0.586 6.586 10 N -0.732 5.732 11 C 0.146 3.854 12 C -0.072 4.072 13 C -0.126 4.126 14 C -0.125 4.125 15 C 0.037 3.963 16 C -0.510 4.510 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.095 3.905 25 C 0.500 3.500 26 O -0.524 6.524 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.260 0.740 50 H 0.109 0.891 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.814 -11.735 -23.449 28.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.344 5.344 4 C -0.013 4.013 5 C -0.200 4.200 6 C 0.001 3.999 7 N -0.364 5.364 8 C 0.405 3.595 9 O -0.463 6.463 10 N -0.389 5.389 11 C 0.022 3.978 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.182 4.182 15 C 0.000 4.000 16 C -0.548 4.548 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.032 4.032 25 C 0.285 3.715 26 O -0.398 6.398 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.127 0.873 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.942 -11.305 -23.087 27.938 hybrid contribution 0.392 -0.587 1.070 1.282 sum 11.334 -11.892 -22.017 27.470 Atomic orbital electron populations 1.22133 0.95713 1.02206 1.02578 1.21483 0.94743 0.82024 1.02974 1.48012 1.65828 1.14369 1.06188 1.21878 0.98623 0.95382 0.85415 1.22506 0.99829 0.95717 1.01971 1.21211 1.02671 0.97878 0.78154 1.46868 1.38477 1.44738 1.06367 1.15948 0.80658 0.81147 0.81713 1.90905 1.41961 1.37312 1.76170 1.45591 1.39371 1.49632 1.04257 1.21527 0.91795 0.95938 0.88504 1.20921 0.97523 0.96609 0.92235 1.21745 1.00231 0.94726 1.01656 1.21742 0.94859 1.00234 1.01408 1.19077 0.93215 0.94995 0.92715 1.21163 1.16875 1.25689 0.91079 0.92288 1.25004 0.95270 0.95271 0.98940 1.69954 1.21023 1.30378 1.32162 0.86714 0.78029 0.78602 0.84965 1.20334 1.21443 1.20331 1.21835 0.92396 0.86440 1.02536 1.21255 0.78291 0.88449 0.83483 1.90781 1.50654 1.67772 1.30633 0.92627 0.91658 0.92005 0.89854 0.90639 0.90522 0.89425 0.90485 0.89285 0.88060 0.91345 0.76574 0.91833 0.92122 0.94733 0.91615 0.93610 0.93364 0.91425 0.95479 0.96336 0.96369 0.93040 0.87317 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.11 0.86 6.10 -4.04 -0.02 0.83 16 3 N -0.61 -5.10 2.47 -173.06 -0.43 -5.53 16 4 C 0.11 0.56 5.90 -3.63 -0.02 0.53 16 5 C -0.16 -1.02 5.94 -26.72 -0.16 -1.18 16 6 C 0.12 1.05 5.92 -4.56 -0.03 1.03 16 7 N -0.62 -7.13 2.68 -180.97 -0.48 -7.61 16 8 C 0.70 11.30 8.26 -86.92 -0.72 10.58 16 9 O -0.59 -11.46 15.65 5.29 0.08 -11.38 16 10 N -0.73 -11.93 4.83 -65.22 -0.31 -12.24 16 11 C 0.15 2.78 4.57 -4.04 -0.02 2.76 16 12 C -0.07 -1.47 0.54 -154.50 -0.08 -1.55 16 13 C -0.13 -2.50 8.05 37.16 0.30 -2.20 16 14 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 15 C 0.04 0.95 4.04 -27.88 -0.11 0.84 16 16 C -0.51 -13.96 7.65 -34.44 -0.26 -14.22 16 17 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.10 0.90 5.33 -4.79 -0.03 0.87 16 25 C 0.50 5.65 7.26 -10.91 -0.08 5.57 16 26 O -0.52 -8.06 16.71 5.56 0.09 -7.97 16 27 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.78 7.46 -51.93 -0.39 0.39 16 31 H 0.08 0.38 7.84 -51.93 -0.41 -0.03 16 32 H 0.08 0.28 6.71 -51.93 -0.35 -0.07 16 33 H 0.09 0.27 7.75 -51.93 -0.40 -0.14 16 34 H 0.08 0.71 7.97 -51.93 -0.41 0.29 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 1.09 6.85 -51.92 -0.36 0.73 16 37 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.40 5.96 3.79 -40.82 -0.15 5.81 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.62 6.86 -51.93 -0.36 0.26 16 42 H 0.06 1.37 6.62 -51.93 -0.34 1.03 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 46 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.11 1.09 6.08 -51.93 -0.32 0.77 16 51 H 0.10 0.60 7.17 -51.93 -0.37 0.22 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -34.77 391.78 -8.72 -43.49 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.63 Total: 2.60 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.65 Total: 2.29 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.49 Total: -51.63 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.18 Total: -19.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.77 -8.72 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377033607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.816 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds