Wall clock time and date at job start Tue Mar 31 2020 14:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46614 * 2 1 4 4 C 1.50691 * 109.47562 * 120.00430 * 2 1 3 5 5 O 1.21282 * 120.00274 * 67.42038 * 4 2 1 6 6 N 1.34773 * 119.99887 * 247.42243 * 4 2 1 7 7 C 1.46923 * 120.63441 * 355.45938 * 6 4 2 8 8 C 1.53627 * 108.54712 * 126.36715 * 7 6 4 9 9 C 1.53036 * 109.23717 * 54.85868 * 8 7 6 10 10 N 1.46512 * 109.45742 * 178.49083 * 9 8 7 11 11 C 1.46505 * 119.99730 * 60.06453 * 10 9 8 12 12 C 1.36933 * 120.00142 * 240.07284 * 10 9 8 13 13 H 1.08004 * 120.00267 * 25.79764 * 12 10 9 14 14 C 1.38809 * 120.00045 * 205.80999 * 12 10 9 15 15 N 1.31623 * 119.99872 * 8.81224 * 14 12 10 16 16 Si 1.86802 * 120.00211 * 188.82131 * 14 12 10 17 17 H 1.48495 * 109.47038 * 89.99356 * 16 14 12 18 18 H 1.48499 * 109.47128 * 209.99487 * 16 14 12 19 19 H 1.48496 * 109.46666 * 329.99487 * 16 14 12 20 20 C 1.53035 * 109.54115 * 298.50898 * 9 8 7 21 21 C 1.46928 * 120.63249 * 175.73538 * 6 4 2 22 22 N 1.46905 * 109.46820 * 240.00826 * 2 1 3 23 23 C 1.47005 * 111.00617 * 79.16388 * 22 2 1 24 24 C 1.53095 * 109.26140 * 177.60651 * 23 22 2 25 25 O 1.43015 * 109.25589 * 56.84977 * 24 23 22 26 26 C 1.43016 * 113.74111 * 301.33047 * 25 24 23 27 27 C 1.47019 * 110.99720 * 315.52457 * 22 2 1 28 28 H 1.08996 * 109.47791 * 63.07100 * 1 2 3 29 29 H 1.09001 * 109.46766 * 183.07482 * 1 2 3 30 30 H 1.09001 * 109.46828 * 303.06889 * 1 2 3 31 31 H 1.09001 * 109.58639 * 246.20387 * 7 6 4 32 32 H 1.09001 * 109.58577 * 6.62743 * 7 6 4 33 33 H 1.09002 * 109.63032 * 294.86373 * 8 7 6 34 34 H 1.09003 * 109.45541 * 174.74236 * 8 7 6 35 35 H 1.08998 * 109.46376 * 58.53887 * 9 8 7 36 36 H 1.09004 * 109.46730 * 94.07011 * 11 10 9 37 37 H 1.08994 * 109.47063 * 214.06834 * 11 10 9 38 38 H 1.09004 * 109.47032 * 334.07278 * 11 10 9 39 39 H 0.96998 * 120.00063 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.49590 * 301.41995 * 20 9 8 41 41 H 1.08999 * 109.52581 * 181.33641 * 20 9 8 42 42 H 1.09000 * 109.58622 * 353.37668 * 21 6 4 43 43 H 1.09008 * 109.58584 * 113.65409 * 21 6 4 44 44 H 1.09003 * 109.50500 * 57.66971 * 23 22 2 45 45 H 1.09007 * 109.54296 * 297.56470 * 23 22 2 46 46 H 1.08999 * 109.50790 * 176.78046 * 24 23 22 47 47 H 1.09001 * 109.50683 * 296.91606 * 24 23 22 48 48 H 1.09003 * 109.50340 * 298.74061 * 26 25 24 49 49 H 1.08997 * 109.54819 * 178.63061 * 26 25 24 50 50 H 1.08997 * 109.50810 * 302.33620 * 27 22 2 51 51 H 1.08997 * 109.50336 * 62.46276 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 1.8544 -1.9034 1.3569 6 7 2.6796 -0.0201 2.1900 7 6 2.9904 1.4042 2.0073 8 6 2.4398 2.1830 3.2116 9 6 2.9992 1.5785 4.5014 10 7 2.5056 2.3401 5.6515 11 6 1.0654 2.4367 5.9026 12 6 3.3903 2.9619 6.4917 13 1 4.3633 3.2578 6.1283 14 6 3.0366 3.2115 7.8106 15 7 1.9276 2.7010 8.3025 16 14 4.1344 4.2723 8.8872 17 1 3.7207 5.6934 8.7677 18 1 4.0094 3.8376 10.3017 19 1 5.5457 4.1288 8.4482 20 6 2.5463 0.1217 4.6225 21 6 3.0931 -0.6790 3.4365 22 7 2.0196 -0.6924 -1.1996 23 6 1.9520 0.1837 -2.3782 24 6 2.5257 -0.5551 -3.5901 25 8 1.8069 -1.7766 -3.7816 26 6 1.8522 -2.6542 -2.6533 27 6 1.2718 -1.9367 -1.4318 28 1 -0.3634 0.4654 -0.9162 29 1 -0.3633 -1.0262 0.0551 30 1 -0.3633 0.5608 0.8612 31 1 4.0704 1.5375 1.9452 32 1 2.5224 1.7658 1.0917 33 1 1.3516 2.1197 3.2221 34 1 2.7428 3.2274 3.1379 35 1 4.0882 1.6196 4.4793 36 1 0.7655 1.6566 6.6024 37 1 0.8354 3.4138 6.3273 38 1 0.5240 2.3115 4.9649 39 1 1.6807 2.8751 9.2242 40 1 1.4572 0.0779 4.6197 41 1 2.9251 -0.3015 5.5528 42 1 2.6929 -1.6925 3.4642 43 1 4.1814 -0.7144 3.4874 44 1 2.5334 1.0872 -2.1939 45 1 0.9139 0.4525 -2.5736 46 1 2.4253 0.0692 -4.4780 47 1 3.5790 -0.7758 -3.4168 48 1 2.8860 -2.9359 -2.4527 49 1 1.2654 -3.5485 -2.8630 50 1 1.3566 -2.5810 -0.5567 51 1 0.2226 -1.7025 -1.6118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985820708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:57 Heat of formation + Delta-G solvation = -36.094209 kcal Electronic energy + Delta-G solvation = -29535.395087 eV Core-core repulsion = 25664.123947 eV Total energy + Delta-G solvation = -3871.271140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71986 -39.38660 -37.63027 -36.13257 -35.07277 -32.32818 -31.59013 -31.30603 -30.46612 -29.66045 -26.97099 -26.01932 -25.32120 -24.32008 -23.94205 -22.72252 -21.87623 -20.47394 -19.55396 -18.39674 -17.48693 -16.89405 -16.76178 -16.24568 -15.79568 -15.29819 -15.16665 -15.07622 -14.99982 -14.68899 -14.13256 -13.92286 -13.85732 -13.56895 -13.24409 -13.11441 -12.72583 -12.56648 -12.46962 -12.27810 -12.14125 -11.90882 -11.69821 -11.64142 -11.44904 -11.27625 -10.96067 -10.86535 -10.84463 -10.74219 -10.40939 -10.25748 -10.18195 -10.02594 -9.88595 -9.63935 -9.42310 -8.59260 -8.57734 -8.44689 -6.73314 -5.73707 -3.23342 2.56919 3.00727 3.35902 3.42233 3.43603 3.56540 3.74781 4.39309 4.46292 4.52183 4.63267 4.69429 4.83993 4.90206 4.94534 5.06098 5.12992 5.22541 5.28366 5.30375 5.34919 5.38218 5.41798 5.48437 5.50626 5.55477 5.62268 5.70027 5.76456 5.78753 5.87019 5.90448 6.02075 6.14918 6.24546 6.35882 6.51226 6.57482 6.62754 6.67325 6.77867 6.88284 6.96786 7.00148 7.36876 7.54194 7.73751 7.78758 8.26644 8.40339 9.22884 9.85356 10.36135 11.30608 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.002534 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.238708 B =11046.527425 C =11209.585678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.056 3.944 3 H 0.106 0.894 4 C 0.532 3.468 5 O -0.544 6.544 6 N -0.601 5.601 7 C 0.106 3.894 8 C -0.148 4.148 9 C 0.180 3.820 10 N -0.596 5.596 11 C 0.164 3.836 12 C -0.256 4.256 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.907 5.907 16 Si 0.905 3.095 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C -0.144 4.144 21 C 0.115 3.885 22 N -0.519 5.519 23 C 0.015 3.985 24 C 0.066 3.934 25 O -0.389 6.389 26 C 0.064 3.936 27 C 0.006 3.994 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.040 0.960 38 H -0.004 1.004 39 H 0.252 0.748 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -5.115 -21.702 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.055 4.055 3 H 0.123 0.877 4 C 0.319 3.681 5 O -0.422 6.422 6 N -0.334 5.334 7 C -0.017 4.017 8 C -0.188 4.188 9 C 0.071 3.929 10 N -0.317 5.317 11 C 0.020 3.980 12 C -0.386 4.386 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.552 5.552 16 Si 0.735 3.265 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.184 4.184 21 C -0.008 4.008 22 N -0.245 5.245 23 C -0.113 4.113 24 C -0.012 4.012 25 O -0.307 6.307 26 C -0.013 4.013 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.115 0.885 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.115 0.885 50 H 0.130 0.870 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.505 -5.883 -21.506 22.302 hybrid contribution -0.222 1.057 0.996 1.469 sum -0.727 -4.826 -20.510 21.083 Atomic orbital electron populations 1.22297 0.94514 1.03721 1.02931 1.21876 0.95086 0.98906 0.89594 0.87675 1.20189 0.77190 0.87089 0.83673 1.90583 1.57890 1.14963 1.78751 1.48141 1.56518 1.11001 1.17762 1.22021 1.00686 0.79854 0.99115 1.22570 1.01242 0.99667 0.95311 1.20282 0.96959 0.88803 0.86843 1.43924 1.02450 1.57598 1.27761 1.20737 0.82645 1.00676 0.93963 1.19203 0.97763 1.31343 0.90245 0.91550 1.25117 0.97737 1.00112 0.96538 1.70047 1.24450 1.46288 1.14405 0.86254 0.80165 0.80131 0.79964 1.21534 1.21735 1.20484 1.22495 1.01132 0.98024 0.96743 1.21692 0.99189 0.97302 0.82601 1.62163 1.55131 1.05311 1.01893 1.22855 1.00787 0.96659 0.90963 1.22635 0.95780 0.85744 0.97004 1.87965 1.74328 1.29710 1.38715 1.22702 1.01236 0.92462 0.84859 1.23117 0.95899 0.92509 1.00673 0.91615 0.90963 0.91179 0.91161 0.90306 0.91957 0.90805 0.91909 0.95353 0.94147 0.98553 0.93753 0.92337 0.90606 0.89746 0.91746 0.89503 0.93583 0.88454 0.92236 0.92324 0.88466 0.86964 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.09 37.16 0.30 -1.49 16 2 C 0.06 0.62 2.48 -68.86 -0.17 0.45 16 3 H 0.11 0.99 4.85 -51.93 -0.25 0.74 16 4 C 0.53 7.57 6.69 -10.99 -0.07 7.50 16 5 O -0.54 -9.26 14.07 5.56 0.08 -9.18 16 6 N -0.60 -8.44 2.97 -172.50 -0.51 -8.95 16 7 C 0.11 1.30 6.38 -3.49 -0.02 1.27 16 8 C -0.15 -2.27 5.34 -26.39 -0.14 -2.41 16 9 C 0.18 3.42 2.55 -67.89 -0.17 3.24 16 10 N -0.60 -14.28 2.81 -173.43 -0.49 -14.77 16 11 C 0.16 3.95 8.03 59.85 0.48 4.43 16 12 C -0.26 -6.81 9.56 -15.06 -0.14 -6.95 16 13 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 14 C 0.00 0.09 5.17 -17.43 -0.09 0.00 16 15 N -0.91 -26.11 10.66 55.49 0.59 -25.52 16 16 Si 0.90 21.49 29.56 -169.99 -5.03 16.46 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.14 -2.57 5.34 -26.62 -0.14 -2.71 16 21 C 0.11 1.75 6.42 -3.71 -0.02 1.72 16 22 N -0.52 -5.55 4.60 -227.72 -1.05 -6.60 16 23 C 0.02 0.13 5.46 -3.72 -0.02 0.11 16 24 C 0.07 0.54 7.01 37.21 0.26 0.80 16 25 O -0.39 -4.06 10.83 -35.23 -0.38 -4.44 16 26 C 0.06 0.62 7.01 37.21 0.26 0.88 16 27 C 0.01 0.06 4.51 -3.71 -0.02 0.04 16 28 H 0.06 0.57 7.07 -51.93 -0.37 0.20 16 29 H 0.07 0.81 6.60 -51.93 -0.34 0.47 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.77 5.06 -51.93 -0.26 0.51 16 33 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.21 7.88 -51.93 -0.41 0.80 16 36 H 0.03 0.75 7.36 -51.93 -0.38 0.36 16 37 H 0.04 1.05 7.35 -51.93 -0.38 0.67 16 38 H 0.00 -0.08 6.46 -51.93 -0.34 -0.42 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.35 7.03 -51.93 -0.37 0.98 16 43 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 44 H 0.09 0.60 8.02 -51.93 -0.42 0.18 16 45 H 0.05 0.38 7.10 -51.93 -0.37 0.01 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.11 1.45 5.81 -51.93 -0.30 1.15 16 51 H 0.05 0.49 6.45 -51.93 -0.34 0.16 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -31.16 377.75 -9.43 -40.59 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.62 Total: -0.18 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 0.29 Total: 6.90 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -1.45 Total: -55.85 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.30 Total: -13.62 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.16 -9.43 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985820708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.495 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds