Wall clock time and date at job start Tue Mar 31 2020 14:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47625 * 2 1 4 4 C 1.47011 * 110.99737 * 287.63475 * 3 2 1 5 5 C 1.53102 * 109.25535 * 177.60442 * 4 3 2 6 6 O 1.43022 * 109.25630 * 56.84988 * 5 4 3 7 7 C 1.43017 * 113.73703 * 301.33079 * 6 5 4 8 8 C 1.47015 * 110.99948 * 164.00030 * 3 2 1 9 9 H 1.08996 * 109.54296 * 62.43605 * 8 3 2 10 10 C 1.50701 * 109.50495 * 302.32685 * 8 3 2 11 11 O 1.21275 * 120.00464 * 334.64896 * 10 8 3 12 12 N 1.34785 * 119.99564 * 154.64864 * 10 8 3 13 13 C 1.46921 * 120.63194 * 355.27829 * 12 10 8 14 14 C 1.53196 * 108.89389 * 126.46123 * 13 12 10 15 15 C 1.53039 * 109.30841 * 54.56330 * 14 13 12 16 16 C 1.53045 * 109.54252 * 298.63692 * 15 14 13 17 17 H 1.09002 * 109.49344 * 301.38280 * 16 15 14 18 18 N 1.46501 * 109.49923 * 181.31688 * 16 15 14 19 19 C 1.46500 * 120.00003 * 299.99756 * 18 16 15 20 20 C 1.36937 * 119.99869 * 119.99987 * 18 16 15 21 21 H 1.07999 * 119.99682 * 22.22588 * 20 18 16 22 22 C 1.38806 * 119.99855 * 202.23151 * 20 18 16 23 23 N 1.31624 * 120.00258 * 11.66081 * 22 20 18 24 24 Si 1.86798 * 120.00247 * 191.66425 * 22 20 18 25 25 H 1.48503 * 109.47044 * 59.99389 * 24 22 20 26 26 H 1.48493 * 109.47440 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46885 * 299.99872 * 24 22 20 28 28 C 1.46963 * 120.65048 * 175.10125 * 12 10 8 29 29 H 1.09001 * 109.46835 * 300.00535 * 1 2 3 30 30 H 1.09007 * 109.46822 * 59.99693 * 1 2 3 31 31 H 1.08990 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46835 * 239.99465 * 2 1 3 33 33 H 1.09007 * 109.46822 * 120.00307 * 2 1 3 34 34 H 1.09006 * 109.50769 * 57.67408 * 4 3 2 35 35 H 1.08993 * 109.54534 * 297.56273 * 4 3 2 36 36 H 1.08996 * 109.50534 * 296.91766 * 5 4 3 37 37 H 1.09002 * 109.50389 * 176.78265 * 5 4 3 38 38 H 1.08998 * 109.50107 * 298.72955 * 7 6 5 39 39 H 1.09000 * 109.53669 * 178.62908 * 7 6 5 40 40 H 1.09002 * 109.58759 * 6.60390 * 13 12 10 41 41 H 1.08998 * 109.59255 * 246.32630 * 13 12 10 42 42 H 1.08996 * 109.49734 * 174.51576 * 14 13 12 43 43 H 1.08997 * 109.49576 * 294.58703 * 14 13 12 44 44 H 1.09005 * 109.46069 * 58.66043 * 15 14 13 45 45 H 1.09001 * 109.45985 * 178.61600 * 15 14 13 46 46 H 1.09003 * 109.47003 * 93.06167 * 19 18 16 47 47 H 1.08987 * 109.47286 * 213.06399 * 19 18 16 48 48 H 1.09000 * 109.46971 * 333.06649 * 19 18 16 49 49 H 0.97001 * 120.00360 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.46713 * 113.75155 * 28 12 10 51 51 H 1.08995 * 109.59345 * 353.39150 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8034 2.0202 -1.3080 5 6 2.2721 3.4764 -1.2458 6 8 3.6449 3.5134 -0.8463 7 6 3.8916 2.9036 0.4236 8 6 3.4393 1.4418 0.3783 9 1 4.0344 0.8992 -0.3562 10 6 3.6235 0.8157 1.7367 11 8 2.6989 0.7853 2.5209 12 7 4.8159 0.2894 2.0800 13 6 5.9142 0.2255 1.1063 14 6 7.1550 0.8875 1.7138 15 6 7.4700 0.2322 3.0605 16 6 6.2943 0.4392 4.0181 17 1 6.1122 1.5064 4.1451 18 7 6.6097 -0.1611 5.3167 19 6 6.8942 -1.5951 5.4110 20 6 6.6386 0.6182 6.4423 21 1 6.1016 1.5549 6.4644 22 6 7.3582 0.2042 7.5547 23 7 8.1929 -0.8091 7.4590 24 14 7.1421 1.0849 9.1878 25 1 5.7248 0.9857 9.6199 26 1 8.0159 0.4546 10.2096 27 1 7.5132 2.5143 9.0322 28 6 5.0438 -0.2280 3.4366 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.7425 1.9897 -1.5564 35 1 2.3713 1.4873 -2.0706 36 1 1.6676 4.0227 -0.5218 37 1 2.1667 3.9350 -2.2290 38 1 3.3342 3.4334 1.1961 39 1 4.9572 2.9482 0.6485 40 1 5.6272 0.7528 0.1965 41 1 6.1339 -0.8159 0.8710 42 1 8.0021 0.7599 1.0400 43 1 6.9645 1.9505 1.8617 44 1 7.6363 -0.8352 2.9149 45 1 8.3669 0.6848 3.4835 46 1 7.9691 -1.7582 5.3331 47 1 6.5377 -1.9740 6.3687 48 1 6.3875 -2.1201 4.6012 49 1 8.6954 -1.0987 8.2365 50 1 5.1918 -1.3070 3.3937 51 1 4.1825 0.0003 4.0643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027469708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:04 Heat of formation + Delta-G solvation = -36.131302 kcal Electronic energy + Delta-G solvation = -30021.014880 eV Core-core repulsion = 26149.742132 eV Total energy + Delta-G solvation = -3871.272748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.82269 -39.10024 -37.45301 -36.14399 -35.12536 -32.61196 -31.75937 -31.25827 -31.08677 -28.79893 -26.91938 -26.02552 -25.65538 -24.37204 -23.45281 -22.26573 -21.68855 -21.09630 -19.48443 -18.56550 -17.43143 -16.82167 -16.72984 -16.64784 -15.70439 -15.37006 -15.19979 -14.82881 -14.58292 -14.42841 -14.28309 -14.06434 -13.88861 -13.71901 -13.28350 -13.00751 -12.72433 -12.68568 -12.37595 -12.24132 -12.12590 -11.99913 -11.86269 -11.63672 -11.10020 -11.01875 -10.94477 -10.85604 -10.79644 -10.63809 -10.42595 -10.31755 -10.16439 -10.08027 -9.88748 -9.77916 -9.44992 -8.62453 -8.57521 -8.35511 -6.76526 -5.72382 -3.18244 2.64105 2.94447 3.40669 3.45572 3.45844 3.47622 3.67204 4.41944 4.49878 4.53870 4.66908 4.68437 4.82666 4.90090 4.95010 5.08416 5.12659 5.19788 5.26111 5.29647 5.34294 5.42911 5.44873 5.47490 5.51276 5.56163 5.66130 5.68004 5.74279 5.83923 5.85062 5.97462 6.09373 6.13623 6.20735 6.35840 6.47794 6.59082 6.65665 6.72725 6.77571 6.81969 6.92862 6.98588 7.39490 7.57375 7.71715 7.81838 8.30799 8.40617 9.23790 9.86134 10.34131 11.32710 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003145 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.479524 B = 8901.386888 C = 9100.793072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.018 3.982 5 C 0.060 3.940 6 O -0.379 6.379 7 C 0.077 3.923 8 C 0.031 3.969 9 H 0.070 0.930 10 C 0.517 3.483 11 O -0.518 6.518 12 N -0.605 5.605 13 C 0.103 3.897 14 C -0.132 4.132 15 C -0.132 4.132 16 C 0.170 3.830 17 H 0.065 0.935 18 N -0.592 5.592 19 C 0.163 3.837 20 C -0.255 4.255 21 H 0.068 0.932 22 C 0.003 3.997 23 N -0.909 5.909 24 Si 0.906 3.094 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.098 3.902 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.047 0.953 48 H -0.004 1.004 49 H 0.253 0.747 50 H 0.063 0.937 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 3.172 -21.015 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 N -0.241 5.241 4 C -0.110 4.110 5 C -0.017 4.017 6 O -0.297 6.297 7 C -0.001 4.001 8 C -0.081 4.081 9 H 0.088 0.912 10 C 0.303 3.697 11 O -0.393 6.393 12 N -0.339 5.339 13 C -0.020 4.020 14 C -0.171 4.171 15 C -0.172 4.172 16 C 0.060 3.940 17 H 0.083 0.917 18 N -0.314 5.314 19 C 0.019 3.981 20 C -0.385 4.385 21 H 0.086 0.914 22 C -0.195 4.195 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.209 1.209 28 C -0.025 4.025 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.015 0.985 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.656 3.396 -20.164 22.613 hybrid contribution 0.390 -0.332 0.417 0.660 sum -9.266 3.065 -19.747 22.027 Atomic orbital electron populations 1.21700 0.94361 1.01471 1.02362 1.22184 0.96819 0.87840 1.01103 1.61976 1.15101 1.18779 1.28240 1.22872 1.02372 0.95974 0.89768 1.22725 0.82894 0.95063 1.01008 1.88013 1.26197 1.78941 1.36538 1.22553 1.01913 0.89248 0.86371 1.22367 0.90853 0.99002 0.95866 0.91241 1.20052 0.82612 0.78663 0.88378 1.90715 1.39782 1.56808 1.51981 1.48259 1.11565 1.60444 1.13659 1.21846 0.87535 1.01303 0.91334 1.21939 0.96532 1.00347 0.98248 1.22123 1.00839 1.00356 0.93869 1.20572 0.90707 0.96650 0.86037 0.91710 1.43879 1.81303 1.04639 1.01594 1.20784 0.97903 0.82478 0.96956 1.19199 1.24789 1.03662 0.90830 0.91415 1.24990 0.96784 0.98641 0.99082 1.70061 1.27383 1.28902 1.29039 0.86318 0.77529 0.79043 0.83554 1.21017 1.21652 1.20938 1.22443 1.01226 0.98272 0.80598 0.91414 0.93092 0.92335 0.95106 0.89838 0.89034 0.93918 0.91905 0.88239 0.91243 0.87666 0.90375 0.91390 0.91167 0.91697 0.92457 0.91387 0.95453 0.93473 0.98523 0.93719 0.91867 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.97 37.16 0.37 -1.01 16 2 C 0.05 0.54 5.33 -3.82 -0.02 0.52 16 3 N -0.51 -6.05 4.22 -227.73 -0.96 -7.01 16 4 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 5 C 0.06 0.52 7.01 37.21 0.26 0.79 16 6 O -0.38 -4.20 10.83 -35.23 -0.38 -4.58 16 7 C 0.08 0.88 6.19 37.20 0.23 1.11 16 8 C 0.03 0.38 1.56 -68.75 -0.11 0.27 16 9 H 0.07 0.75 6.24 -51.93 -0.32 0.43 16 10 C 0.52 7.91 5.70 -10.98 -0.06 7.85 16 11 O -0.52 -9.90 14.84 5.56 0.08 -9.82 16 12 N -0.60 -8.95 2.98 -172.74 -0.51 -9.46 16 13 C 0.10 1.19 6.26 -3.71 -0.02 1.16 16 14 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 15 C -0.13 -2.24 5.15 -26.69 -0.14 -2.38 16 16 C 0.17 3.39 2.75 -67.81 -0.19 3.20 16 17 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 18 N -0.59 -14.58 2.82 -173.35 -0.49 -15.07 16 19 C 0.16 3.94 8.04 59.85 0.48 4.43 16 20 C -0.26 -7.01 9.60 -15.06 -0.14 -7.15 16 21 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 23 N -0.91 -26.27 10.60 55.49 0.59 -25.68 16 24 Si 0.91 22.02 29.57 -169.99 -5.03 16.99 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.10 1.78 5.77 -3.69 -0.02 1.75 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.42 6.74 -51.93 -0.35 0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.03 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.08 1.17 5.88 -51.93 -0.31 0.86 16 34 H 0.09 0.68 6.64 -51.93 -0.35 0.34 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.10 7.96 -51.93 -0.41 0.69 16 40 H 0.08 0.73 5.24 -51.93 -0.27 0.46 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.03 0.71 7.49 -51.93 -0.39 0.32 16 47 H 0.05 1.25 7.11 -51.94 -0.37 0.88 16 48 H 0.00 -0.08 6.34 -51.93 -0.33 -0.41 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 50 H 0.06 1.15 6.48 -51.93 -0.34 0.81 16 51 H 0.09 1.86 7.04 -51.93 -0.37 1.50 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -31.54 381.49 -9.38 -40.92 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.80 Total: -0.92 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 0.37 Total: 8.89 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -1.38 Total: -57.23 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.30 Total: -14.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.54 -9.38 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027469708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.790 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds