Wall clock time and date at job start Tue Mar 31 2020 14:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47625 * 2 1 4 4 C 1.47011 * 110.99737 * 287.63475 * 3 2 1 5 5 C 1.53102 * 109.25535 * 177.60442 * 4 3 2 6 6 O 1.43022 * 109.25630 * 56.84988 * 5 4 3 7 7 C 1.43017 * 113.73703 * 301.33079 * 6 5 4 8 8 C 1.47015 * 110.99948 * 164.00030 * 3 2 1 9 9 H 1.08996 * 109.54296 * 62.43605 * 8 3 2 10 10 C 1.50701 * 109.50495 * 302.32685 * 8 3 2 11 11 O 1.21275 * 120.00464 * 334.64896 * 10 8 3 12 12 N 1.34785 * 119.99564 * 154.64864 * 10 8 3 13 13 C 1.46921 * 120.63194 * 355.27829 * 12 10 8 14 14 C 1.53196 * 108.89389 * 126.46123 * 13 12 10 15 15 C 1.53039 * 109.30841 * 54.56330 * 14 13 12 16 16 C 1.53045 * 109.54252 * 298.63692 * 15 14 13 17 17 H 1.09002 * 109.49344 * 301.38280 * 16 15 14 18 18 N 1.46501 * 109.49923 * 181.31688 * 16 15 14 19 19 C 1.46500 * 120.00003 * 299.99756 * 18 16 15 20 20 C 1.36937 * 119.99869 * 119.99987 * 18 16 15 21 21 H 1.07999 * 119.99682 * 22.22588 * 20 18 16 22 22 C 1.38806 * 119.99855 * 202.23151 * 20 18 16 23 23 N 1.31624 * 120.00258 * 11.66081 * 22 20 18 24 24 Si 1.86798 * 120.00247 * 191.66425 * 22 20 18 25 25 H 1.48503 * 109.47044 * 59.99389 * 24 22 20 26 26 H 1.48493 * 109.47440 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46885 * 299.99872 * 24 22 20 28 28 C 1.46963 * 120.65048 * 175.10125 * 12 10 8 29 29 H 1.09001 * 109.46835 * 300.00535 * 1 2 3 30 30 H 1.09007 * 109.46822 * 59.99693 * 1 2 3 31 31 H 1.08990 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46835 * 239.99465 * 2 1 3 33 33 H 1.09007 * 109.46822 * 120.00307 * 2 1 3 34 34 H 1.09006 * 109.50769 * 57.67408 * 4 3 2 35 35 H 1.08993 * 109.54534 * 297.56273 * 4 3 2 36 36 H 1.08996 * 109.50534 * 296.91766 * 5 4 3 37 37 H 1.09002 * 109.50389 * 176.78265 * 5 4 3 38 38 H 1.08998 * 109.50107 * 298.72955 * 7 6 5 39 39 H 1.09000 * 109.53669 * 178.62908 * 7 6 5 40 40 H 1.09002 * 109.58759 * 6.60390 * 13 12 10 41 41 H 1.08998 * 109.59255 * 246.32630 * 13 12 10 42 42 H 1.08996 * 109.49734 * 174.51576 * 14 13 12 43 43 H 1.08997 * 109.49576 * 294.58703 * 14 13 12 44 44 H 1.09005 * 109.46069 * 58.66043 * 15 14 13 45 45 H 1.09001 * 109.45985 * 178.61600 * 15 14 13 46 46 H 1.09003 * 109.47003 * 93.06167 * 19 18 16 47 47 H 1.08987 * 109.47286 * 213.06399 * 19 18 16 48 48 H 1.09000 * 109.46971 * 333.06649 * 19 18 16 49 49 H 0.97001 * 120.00360 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.46713 * 113.75155 * 28 12 10 51 51 H 1.08995 * 109.59345 * 353.39150 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8034 2.0202 -1.3080 5 6 2.2721 3.4764 -1.2458 6 8 3.6449 3.5134 -0.8463 7 6 3.8916 2.9036 0.4236 8 6 3.4393 1.4418 0.3783 9 1 4.0344 0.8992 -0.3562 10 6 3.6235 0.8157 1.7367 11 8 2.6989 0.7853 2.5209 12 7 4.8159 0.2894 2.0800 13 6 5.9142 0.2255 1.1063 14 6 7.1550 0.8875 1.7138 15 6 7.4700 0.2322 3.0605 16 6 6.2943 0.4392 4.0181 17 1 6.1122 1.5064 4.1451 18 7 6.6097 -0.1611 5.3167 19 6 6.8942 -1.5951 5.4110 20 6 6.6386 0.6182 6.4423 21 1 6.1016 1.5549 6.4644 22 6 7.3582 0.2042 7.5547 23 7 8.1929 -0.8091 7.4590 24 14 7.1421 1.0849 9.1878 25 1 5.7248 0.9857 9.6199 26 1 8.0159 0.4546 10.2096 27 1 7.5132 2.5143 9.0322 28 6 5.0438 -0.2280 3.4366 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.7425 1.9897 -1.5564 35 1 2.3713 1.4873 -2.0706 36 1 1.6676 4.0227 -0.5218 37 1 2.1667 3.9350 -2.2290 38 1 3.3342 3.4334 1.1961 39 1 4.9572 2.9482 0.6485 40 1 5.6272 0.7528 0.1965 41 1 6.1339 -0.8159 0.8710 42 1 8.0021 0.7599 1.0400 43 1 6.9645 1.9505 1.8617 44 1 7.6363 -0.8352 2.9149 45 1 8.3669 0.6848 3.4835 46 1 7.9691 -1.7582 5.3331 47 1 6.5377 -1.9740 6.3687 48 1 6.3875 -2.1201 4.6012 49 1 8.6954 -1.0987 8.2365 50 1 5.1918 -1.3070 3.3937 51 1 4.1825 0.0003 4.0643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027469708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:03 Heat of formation + Delta-G solvation = -57.831789 kcal Electronic energy + Delta-G solvation = -30021.955884 eV Core-core repulsion = 26149.742132 eV Total energy + Delta-G solvation = -3872.213752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89200 -40.17067 -38.80897 -37.09570 -36.74106 -34.12700 -32.88725 -32.75921 -31.85180 -30.39491 -28.08018 -27.76890 -26.78727 -25.58881 -24.93243 -23.11111 -23.05793 -22.09795 -20.85433 -19.81537 -18.83497 -18.48099 -17.77119 -17.51733 -17.07058 -16.59579 -16.20063 -16.06178 -15.75179 -15.66268 -15.41877 -15.35004 -15.15825 -15.02626 -14.47619 -14.45302 -14.11358 -13.84957 -13.73534 -13.60798 -13.15042 -12.93038 -12.85044 -12.83284 -12.73566 -12.50713 -12.40780 -12.30551 -12.15009 -11.95887 -11.89970 -11.81144 -11.66854 -11.57883 -11.39972 -11.00626 -10.68274 -10.56833 -9.74270 -9.40071 -8.77341 -7.85012 -5.32658 1.43461 1.46302 1.46835 1.53045 1.79757 2.49227 2.62300 2.84770 3.28395 3.40732 3.59408 3.67129 3.80025 3.89440 3.97644 4.02357 4.06853 4.11405 4.20891 4.23333 4.34050 4.35571 4.39431 4.51791 4.56713 4.60155 4.64877 4.69969 4.73546 4.76182 4.84963 4.89942 4.92445 4.94929 5.01070 5.05976 5.14473 5.28261 5.29879 5.42017 5.47431 5.49426 5.62528 5.71369 5.78008 5.95313 6.02163 6.30964 6.40544 7.10809 7.14179 7.84854 8.27039 9.17782 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003145 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.479524 B = 8901.386888 C = 9100.793072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.020 3.980 5 C 0.055 3.945 6 O -0.384 6.384 7 C 0.081 3.919 8 C 0.042 3.958 9 H 0.092 0.908 10 C 0.516 3.484 11 O -0.564 6.564 12 N -0.603 5.603 13 C 0.101 3.899 14 C -0.122 4.122 15 C -0.122 4.122 16 C 0.169 3.831 17 H 0.047 0.953 18 N -0.610 5.610 19 C 0.181 3.819 20 C -0.267 4.267 21 H 0.063 0.937 22 C -0.047 4.047 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.275 1.275 28 C 0.116 3.884 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.129 0.871 38 H 0.048 0.952 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.006 0.994 47 H 0.016 0.984 48 H 0.028 0.972 49 H 0.249 0.751 50 H 0.064 0.936 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.343 3.817 -24.372 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.107 4.107 5 C -0.022 4.022 6 O -0.302 6.302 7 C 0.003 3.997 8 C -0.070 4.070 9 H 0.110 0.890 10 C 0.304 3.696 11 O -0.442 6.442 12 N -0.337 5.337 13 C -0.020 4.020 14 C -0.160 4.160 15 C -0.162 4.162 16 C 0.061 3.939 17 H 0.065 0.935 18 N -0.333 5.333 19 C 0.037 3.963 20 C -0.397 4.397 21 H 0.081 0.919 22 C -0.243 4.243 23 N -0.581 5.581 24 Si 0.794 3.206 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.201 1.201 28 C -0.009 4.009 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.024 0.976 47 H 0.034 0.966 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.858 4.062 -23.586 25.884 hybrid contribution 0.376 -0.504 1.402 1.537 sum -9.481 3.558 -22.184 24.386 Atomic orbital electron populations 1.21660 0.93418 1.02109 1.02188 1.22131 0.97629 0.87704 1.00301 1.61966 1.14823 1.19189 1.30350 1.22962 1.03648 0.95647 0.88419 1.22954 0.81683 0.95258 1.02269 1.88012 1.27572 1.78783 1.35820 1.22479 1.02266 0.88605 0.86350 1.22289 0.91859 0.99107 0.93741 0.89017 1.20708 0.81847 0.77753 0.89336 1.90694 1.41387 1.58460 1.53695 1.48293 1.12686 1.59977 1.12739 1.22129 0.85758 1.02854 0.91272 1.21894 0.98270 0.99943 0.95936 1.21931 0.98005 1.00695 0.95554 1.20701 0.92722 0.95434 0.85080 0.93508 1.44076 1.81571 1.04755 1.02854 1.20482 0.96671 0.82752 0.96416 1.19459 1.24299 1.03691 0.92293 0.91950 1.25691 0.96889 0.99654 1.02022 1.70209 1.28239 1.30210 1.29461 0.85364 0.77220 0.78264 0.79738 1.20907 1.21634 1.20115 1.21909 0.98661 0.98029 0.82313 0.93725 0.91006 0.91363 0.93236 0.93089 0.87439 0.92696 0.92697 0.85278 0.93362 0.86498 0.87111 0.89713 0.87756 0.91498 0.92419 0.93793 0.97561 0.96555 0.95397 0.94176 0.91762 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.97 71.98 0.72 -1.75 16 2 C 0.05 1.05 5.33 86.30 0.46 1.51 16 3 N -0.54 -11.60 4.22 -874.39 -3.69 -15.29 16 4 C 0.02 0.29 5.47 86.32 0.47 0.77 16 5 C 0.05 0.79 7.01 72.02 0.50 1.30 16 6 O -0.38 -7.37 10.83 -148.98 -1.61 -8.98 16 7 C 0.08 1.70 6.19 72.01 0.45 2.15 16 8 C 0.04 0.92 1.56 44.18 0.07 0.99 16 9 H 0.09 1.61 6.24 -2.39 -0.01 1.59 16 10 C 0.52 15.51 5.70 87.66 0.50 16.01 16 11 O -0.56 -22.30 14.84 -3.01 -0.04 -22.35 16 12 N -0.60 -17.19 2.98 -818.81 -2.44 -19.63 16 13 C 0.10 1.98 6.26 86.36 0.54 2.52 16 14 C -0.12 -2.66 6.08 30.67 0.19 -2.48 16 15 C -0.12 -4.04 5.15 30.62 0.16 -3.89 16 16 C 0.17 6.84 2.75 45.07 0.12 6.97 16 17 H 0.05 2.04 7.86 -2.39 -0.02 2.02 16 18 N -0.61 -30.96 2.82 -702.35 -1.98 -32.94 16 19 C 0.18 9.02 8.04 127.77 1.03 10.05 16 20 C -0.27 -15.14 9.60 84.03 0.81 -14.33 16 21 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 22 C -0.05 -2.69 5.11 84.86 0.43 -2.26 16 23 N -0.93 -55.58 10.60 21.65 0.23 -55.35 16 24 Si 0.97 46.22 29.57 68.60 2.03 48.25 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C 0.12 4.25 5.77 86.36 0.50 4.75 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.98 6.74 -2.38 -0.02 0.96 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.85 8.05 -2.39 -0.02 0.83 16 33 H 0.05 1.42 5.88 -2.38 -0.01 1.40 16 34 H 0.11 1.21 6.64 -2.38 -0.02 1.19 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.12 2.14 7.96 -2.39 -0.02 2.12 16 40 H 0.11 1.53 5.24 -2.39 -0.01 1.52 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.90 7.72 -2.38 -0.02 1.88 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.01 0.33 7.49 -2.39 -0.02 0.31 16 47 H 0.02 0.87 7.11 -2.39 -0.02 0.85 16 48 H 0.03 1.18 6.34 -2.39 -0.02 1.16 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.06 2.33 6.48 -2.39 -0.02 2.31 16 51 H 0.06 2.43 7.04 -2.39 -0.02 2.41 16 Total: -1.00 -72.29 381.49 0.33 -71.95 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.90 Total: 12.03 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 6.94 Total: 22.31 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -7.88 Total: -123.21 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.66 Total: -31.33 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.29 0.33 -71.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027469708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.120 kcal (2) G-P(sol) polarization free energy of solvation -72.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds