Wall clock time and date at job start Tue Mar 31 2020 15:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47223 * 2 1 4 4 C 1.46891 * 111.00068 * 293.12952 * 3 2 1 5 5 C 1.53000 * 109.47182 * 296.73119 * 4 3 2 6 6 C 1.46894 * 110.99604 * 57.08548 * 3 2 1 7 7 C 1.52997 * 109.47616 * 66.04543 * 6 3 2 8 8 N 1.46502 * 109.47569 * 179.97438 * 7 6 3 9 9 C 1.34776 * 119.99849 * 180.27598 * 8 7 6 10 10 O 1.21345 * 120.00189 * 359.72654 * 9 8 7 11 11 C 1.49454 * 119.99539 * 179.72476 * 9 8 7 12 12 O 1.21350 * 120.00093 * 7.23610 * 11 9 8 13 13 N 1.34775 * 119.99655 * 187.23715 * 11 9 8 14 14 C 1.46931 * 120.63244 * 6.22263 * 13 11 9 15 15 C 1.52764 * 109.00448 * 233.58207 * 14 13 11 16 16 C 1.53039 * 109.38370 * 305.58680 * 15 14 13 17 17 C 1.50699 * 109.44719 * 181.25494 * 16 15 14 18 18 H 1.08002 * 120.00491 * 239.93713 * 17 16 15 19 19 C 1.37877 * 120.00000 * 59.93822 * 17 16 15 20 20 N 1.31511 * 120.00061 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00073 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47134 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46991 * 119.99821 * 21 19 17 24 24 H 1.48497 * 109.47549 * 239.99934 * 21 19 17 25 25 C 1.53042 * 109.53823 * 61.24180 * 16 15 14 26 26 C 1.46933 * 120.62979 * 186.49695 * 13 11 9 27 27 H 1.08995 * 109.47131 * 303.78561 * 1 2 3 28 28 H 1.09002 * 109.46693 * 63.78626 * 1 2 3 29 29 H 1.09004 * 109.47257 * 183.77895 * 1 2 3 30 30 H 1.09001 * 109.46860 * 239.99822 * 2 1 3 31 31 H 1.08998 * 109.47093 * 120.00267 * 2 1 3 32 32 H 1.09001 * 109.47065 * 56.73255 * 4 3 2 33 33 H 1.09003 * 109.47454 * 176.72970 * 4 3 2 34 34 H 1.08997 * 109.47308 * 55.88601 * 5 4 3 35 35 H 1.09005 * 109.46935 * 175.88258 * 5 4 3 36 36 H 1.08996 * 109.46938 * 295.87662 * 5 4 3 37 37 H 1.09000 * 109.47916 * 306.04128 * 6 3 2 38 38 H 1.09006 * 109.47204 * 186.04285 * 6 3 2 39 39 H 1.09006 * 109.47262 * 59.99444 * 7 6 3 40 40 H 1.09000 * 109.47291 * 299.99971 * 7 6 3 41 41 H 0.96998 * 119.99930 * 0.02562 * 8 7 6 42 42 H 1.08997 * 109.58213 * 353.41424 * 14 13 11 43 43 H 1.08994 * 109.58863 * 113.84108 * 14 13 11 44 44 H 1.09003 * 109.55915 * 185.54979 * 15 14 13 45 45 H 1.09001 * 109.38369 * 65.51447 * 15 14 13 46 46 H 1.08999 * 109.45783 * 301.21647 * 16 15 14 47 47 H 0.97002 * 120.00187 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.49286 * 178.68074 * 25 16 15 49 49 H 1.09000 * 109.52159 * 58.60569 * 25 16 15 50 50 H 1.08997 * 109.58783 * 246.15786 * 26 13 11 51 51 H 1.09001 * 109.58338 * 6.43933 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6873 2.0609 -1.2611 5 6 2.4009 1.3599 -2.4189 6 6 1.4926 2.1296 1.1513 7 6 2.0631 1.5418 2.4435 8 7 1.5378 2.2849 3.5917 9 6 1.9102 1.9452 4.8417 10 8 2.6766 1.0208 5.0164 11 6 1.3791 2.7072 6.0125 12 8 0.5146 3.5433 5.8508 13 7 1.8604 2.4657 7.2480 14 6 2.9987 1.5575 7.4438 15 6 2.6134 0.4903 8.4666 16 6 2.1223 1.1683 9.7477 17 6 1.7709 0.1171 10.7688 18 1 0.7651 0.0568 11.1577 19 6 2.7334 -0.7677 11.2065 20 7 3.9580 -0.6947 10.7326 21 14 2.2980 -2.0703 12.4727 22 1 0.8655 -1.9420 12.8424 23 1 2.5420 -3.4185 11.8999 24 1 3.1402 -1.8864 13.6819 25 6 0.8837 2.0122 9.4377 26 6 1.2529 3.1011 8.4255 27 1 -0.3633 0.5714 0.8541 28 1 -0.3633 0.4540 -0.9220 29 1 -0.3634 -1.0255 0.0677 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.6099 2.0217 -1.4213 33 1 2.0097 3.1009 -1.2119 34 1 2.1346 0.3030 -2.4233 35 1 2.0972 1.8151 -3.3617 36 1 3.4791 1.4626 -2.2966 37 1 0.4054 2.0534 1.1665 38 1 1.7822 3.1773 1.0699 39 1 3.1503 1.6180 2.4284 40 1 1.7735 0.4942 2.5250 41 1 0.9249 3.0236 3.4520 42 1 3.2520 1.0800 6.4973 43 1 3.8561 2.1204 7.8125 44 1 3.4815 -0.1290 8.6925 45 1 1.8184 -0.1330 8.0571 46 1 2.9093 1.8102 10.1435 47 1 4.6352 -1.3170 11.0408 48 1 0.5207 2.4760 10.3549 49 1 0.1045 1.3753 9.0191 50 1 1.9651 3.7924 8.8759 51 1 0.3563 3.6437 8.1260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340148607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:38 Heat of formation + Delta-G solvation = -51.657926 kcal Electronic energy + Delta-G solvation = -28340.519146 eV Core-core repulsion = 24468.573113 eV Total energy + Delta-G solvation = -3871.946033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68514 -39.17390 -38.31313 -37.00576 -35.17997 -33.42114 -31.93597 -31.19803 -30.82926 -30.03533 -27.98040 -26.47935 -24.92688 -24.31923 -22.75530 -22.33197 -21.72885 -20.53621 -19.93210 -18.80009 -17.31371 -17.02417 -16.72280 -16.47373 -16.14298 -15.79043 -15.26268 -14.93173 -14.71646 -14.51519 -14.34018 -14.07892 -13.59876 -13.49816 -13.23766 -12.97107 -12.88768 -12.72243 -12.67801 -12.42562 -12.25102 -11.98467 -11.83644 -11.75638 -11.68152 -11.38896 -11.30214 -10.94840 -10.88754 -10.83604 -10.54103 -10.32930 -10.04001 -9.68055 -9.31448 -9.20193 -9.15353 -8.71693 -8.49812 -8.29288 -8.07049 -5.98288 -4.04648 1.62696 2.45572 3.30039 3.38308 3.41948 3.42525 3.46117 3.90537 4.41244 4.44263 4.51041 4.56878 4.65925 4.77912 4.90222 4.92002 5.00659 5.10200 5.14725 5.25494 5.31475 5.48900 5.55793 5.58457 5.62506 5.66435 5.67507 5.75918 5.84877 5.90991 5.94683 6.06689 6.12447 6.27257 6.49150 6.61283 6.63714 6.64722 6.76004 6.82984 7.00191 7.13193 7.20695 7.35176 7.69479 7.81798 7.93181 7.99607 8.11703 8.26596 8.45025 8.98770 9.60071 11.07170 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019543 B = 0.002339 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.414453 B =11967.323239 C =12744.776453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.038 3.962 3 N -0.531 5.531 4 C 0.048 3.952 5 C -0.151 4.151 6 C 0.037 3.963 7 C 0.120 3.880 8 N -0.705 5.705 9 C 0.511 3.489 10 O -0.497 6.497 11 C 0.500 3.500 12 O -0.547 6.547 13 N -0.559 5.559 14 C 0.044 3.956 15 C -0.117 4.117 16 C 0.045 3.955 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.123 4.123 26 C 0.107 3.893 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.410 0.590 42 H 0.140 0.860 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.036 0.964 46 H 0.027 0.973 47 H 0.260 0.740 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.066 0.934 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 5.795 -23.757 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.089 4.089 3 N -0.256 5.256 4 C -0.080 4.080 5 C -0.208 4.208 6 C -0.091 4.091 7 C -0.004 4.004 8 N -0.359 5.359 9 C 0.293 3.707 10 O -0.373 6.373 11 C 0.282 3.718 12 O -0.427 6.427 13 N -0.290 5.290 14 C -0.076 4.076 15 C -0.156 4.156 16 C 0.026 3.974 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.161 4.161 26 C -0.015 4.015 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.246 0.754 42 H 0.157 0.843 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.218 5.454 -23.639 24.472 hybrid contribution -1.359 -0.430 0.713 1.594 sum -4.577 5.025 -22.926 23.912 Atomic orbital electron populations 1.22437 0.98121 1.02821 1.02052 1.22336 0.93071 0.90015 1.03524 1.62146 1.59092 1.02422 1.01892 1.22102 0.98237 0.98488 0.89147 1.21829 1.01515 1.00685 0.96802 1.22305 0.98254 0.98547 0.89983 1.21372 0.99945 0.96057 0.82982 1.45683 1.48777 1.36402 1.05065 1.20400 0.81396 0.84487 0.84386 1.90412 1.34145 1.29494 1.83256 1.19830 0.83621 0.83829 0.84532 1.90688 1.32802 1.34110 1.85076 1.48245 1.32065 1.44026 1.04697 1.23400 0.85833 0.92236 1.06087 1.21849 1.02940 0.96713 0.94066 1.18702 0.91685 0.93912 0.93081 1.21225 0.96264 1.14851 1.22656 0.92702 1.24969 0.95035 0.97533 0.96503 1.69856 1.02084 1.37579 1.43338 0.86566 0.78461 0.81706 0.81431 1.19885 1.21059 1.21087 1.22017 1.00947 0.96593 0.96513 1.21890 0.98153 0.96087 0.85335 0.92015 0.92586 0.91767 0.90030 0.90028 0.94488 0.90704 0.92390 0.92306 0.91762 0.93201 0.89965 0.89970 0.90851 0.75395 0.84330 0.92518 0.87735 0.94485 0.95483 0.93030 0.91871 0.92915 0.91535 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 9.25 37.16 0.34 -0.96 16 2 C 0.04 0.27 5.59 -3.82 -0.02 0.25 16 3 N -0.53 -3.95 4.73 -234.64 -1.11 -5.06 16 4 C 0.05 0.29 5.50 -3.83 -0.02 0.27 16 5 C -0.15 -0.82 9.89 37.16 0.37 -0.46 16 6 C 0.04 0.28 4.78 -3.83 -0.02 0.26 16 7 C 0.12 1.18 5.60 -4.04 -0.02 1.16 16 8 N -0.71 -8.20 5.55 -60.73 -0.34 -8.54 16 9 C 0.51 8.01 7.77 -11.58 -0.09 7.91 16 10 O -0.50 -8.88 13.10 5.50 0.07 -8.80 16 11 C 0.50 8.83 7.75 -11.58 -0.09 8.74 16 12 O -0.55 -10.03 15.94 5.50 0.09 -9.94 16 13 N -0.56 -10.59 2.98 -173.53 -0.52 -11.11 16 14 C 0.04 0.89 6.25 -3.93 -0.02 0.87 16 15 C -0.12 -2.78 5.14 -26.83 -0.14 -2.91 16 16 C 0.04 1.10 2.07 -91.73 -0.19 0.91 16 17 C -0.51 -13.94 8.56 -34.44 -0.29 -14.24 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 20 N -0.89 -25.11 11.30 55.43 0.63 -24.48 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 26 C 0.11 1.97 6.42 -3.71 -0.02 1.95 16 27 H 0.06 0.45 6.02 -51.93 -0.31 0.14 16 28 H 0.06 0.35 6.69 -51.93 -0.35 0.00 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.52 6.00 -51.93 -0.31 0.21 16 31 H 0.08 0.64 6.61 -51.93 -0.34 0.30 16 32 H 0.04 0.22 6.44 -51.93 -0.33 -0.11 16 33 H 0.07 0.44 7.99 -51.93 -0.41 0.02 16 34 H 0.06 0.32 6.15 -51.93 -0.32 0.00 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.36 5.84 -51.93 -0.30 0.05 16 38 H 0.08 0.56 7.97 -51.93 -0.41 0.14 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.78 6.62 -51.93 -0.34 0.43 16 41 H 0.41 4.15 7.97 -40.82 -0.33 3.83 16 42 H 0.14 2.77 3.77 -56.79 -0.21 2.56 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.10 2.75 6.03 -51.93 -0.31 2.44 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 51 H 0.08 1.40 7.05 -51.93 -0.37 1.03 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -30.00 388.22 -9.24 -39.24 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.43 Total: 3.94 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.46 Total: 2.65 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.34 Total: -49.19 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.16 Total: -18.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.00 -9.24 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340148607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.417 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds