Wall clock time and date at job start Tue Mar 31 2020 14:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46752 * 2 1 4 4 C 1.52995 * 109.46988 * 119.99572 * 2 1 3 5 5 C 1.52994 * 109.47107 * 86.39418 * 4 2 1 6 6 C 1.50708 * 110.43609 * 179.80559 * 5 4 2 7 7 O 1.21281 * 119.99883 * 1.84546 * 6 5 4 8 8 N 1.34772 * 119.99781 * 181.83825 * 6 5 4 9 9 C 1.46508 * 119.99921 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47065 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.47722 * 55.00097 * 10 9 8 12 12 C 1.53002 * 109.47105 * 294.99687 * 10 9 8 13 13 C 1.53000 * 109.46748 * 175.00074 * 10 9 8 14 14 N 1.46504 * 109.47129 * 184.99876 * 13 10 9 15 15 C 1.36935 * 120.00216 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99845 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00150 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00063 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00049 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47199 * 89.99480 * 19 17 15 21 21 H 1.48495 * 109.47117 * 209.99630 * 19 17 15 22 22 H 1.48502 * 109.46911 * 329.99544 * 19 17 15 23 23 C 1.54630 * 110.48969 * 302.34832 * 5 4 2 24 24 C 1.54484 * 101.76239 * 94.01113 * 23 5 4 25 25 N 1.46765 * 105.47352 * 25.41727 * 24 23 5 26 26 C 1.34415 * 111.30106 * 342.98359 * 25 24 23 27 27 O 1.21288 * 124.94113 * 180.44065 * 26 25 24 28 28 H 1.09001 * 109.47726 * 291.25227 * 1 2 3 29 29 H 1.09003 * 109.47159 * 51.25074 * 1 2 3 30 30 H 1.08998 * 109.46875 * 171.25127 * 1 2 3 31 31 H 1.08996 * 109.47298 * 239.99953 * 2 1 3 32 32 H 1.08996 * 109.46579 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46859 * 299.99600 * 3 2 1 34 34 H 1.08996 * 109.47257 * 59.99929 * 3 2 1 35 35 H 1.08999 * 109.47126 * 326.39546 * 4 2 1 36 36 H 1.09005 * 109.47465 * 206.39714 * 4 2 1 37 37 H 0.97000 * 120.00288 * 0.02562 * 8 6 5 38 38 H 1.08992 * 109.46646 * 60.00243 * 9 8 6 39 39 H 1.09002 * 109.46841 * 300.00190 * 9 8 6 40 40 H 1.08994 * 109.46712 * 60.00277 * 12 10 9 41 41 H 1.09004 * 109.46926 * 300.00334 * 12 10 9 42 42 H 1.08998 * 109.47256 * 180.02562 * 12 10 9 43 43 H 1.08999 * 109.47008 * 304.99292 * 13 10 9 44 44 H 1.08997 * 109.47355 * 64.99528 * 13 10 9 45 45 H 0.97001 * 119.99778 * 359.97438 * 14 13 10 46 46 H 0.96999 * 119.99531 * 179.97438 * 18 17 15 47 47 H 1.08998 * 110.97309 * 212.12899 * 23 5 4 48 48 H 1.08997 * 110.96707 * 335.85852 * 23 5 4 49 49 H 1.09000 * 110.24590 * 144.42038 * 24 23 5 50 50 H 1.08997 * 110.24611 * 266.42195 * 24 23 5 51 51 H 0.97000 * 124.34695 * 162.97804 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.1244 -2.2234 0.9722 6 6 2.6297 -2.9553 2.1888 7 8 2.8705 -2.3436 3.2080 8 7 2.8137 -4.2897 2.1443 9 6 3.3044 -5.0013 3.3273 10 6 3.4244 -6.4935 3.0114 11 1 4.0524 -6.6293 2.1310 12 6 2.0337 -7.0707 2.7397 13 6 4.0533 -7.2180 4.2032 14 7 4.2780 -8.6237 3.8570 15 6 4.8363 -9.4739 4.7739 16 1 5.1106 -9.1082 5.7524 17 6 5.0487 -10.8059 4.4460 18 7 5.5858 -11.6229 5.3272 19 14 4.5737 -11.4385 2.7538 20 1 5.7238 -11.2848 1.8271 21 1 4.2022 -12.8731 2.8480 22 1 3.4175 -10.6604 2.2411 23 6 0.7440 -2.7733 0.5443 24 6 0.8382 -2.6971 -0.9958 25 7 2.2716 -2.7630 -1.3041 26 6 3.0174 -2.4957 -0.2182 27 8 4.2299 -2.4750 -0.1962 28 1 -0.3634 0.3725 0.9577 29 1 -0.3634 0.6432 -0.8015 30 1 -0.3633 -1.0157 -0.1563 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.3541 -0.5424 2.0774 36 1 3.0290 -0.3433 1.5087 37 1 2.6214 -4.7789 1.3291 38 1 2.6063 -4.8591 4.1522 39 1 4.2823 -4.6097 3.6072 40 1 1.5857 -6.5545 1.8907 41 1 1.4056 -6.9350 3.6202 42 1 2.1191 -8.1339 2.5151 43 1 5.0050 -6.7487 4.4527 44 1 3.3827 -7.1576 5.0603 45 1 4.0314 -8.9522 2.9783 46 1 5.7339 -12.5538 5.0981 47 1 0.6142 -3.8032 0.8767 48 1 -0.0609 -2.1405 0.9182 49 1 0.3160 -3.5404 -1.4478 50 1 0.4184 -1.7570 -1.3533 51 1 2.6341 -2.9726 -2.1790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:10 Heat of formation + Delta-G solvation = -62.823232 kcal Electronic energy + Delta-G solvation = -29023.450633 eV Core-core repulsion = 25151.020436 eV Total energy + Delta-G solvation = -3872.430197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00510 -39.26441 -37.60752 -36.96854 -35.73830 -34.50666 -32.80389 -32.05335 -30.48634 -29.72123 -27.32919 -26.88477 -26.01690 -25.04670 -22.89253 -22.44014 -21.78874 -20.64595 -20.21391 -19.34584 -18.02014 -17.59752 -17.40738 -16.87943 -16.05090 -15.52506 -15.29246 -14.96351 -14.66468 -14.50881 -14.35378 -14.25013 -13.99542 -13.69384 -13.53100 -13.35333 -13.18600 -12.79500 -12.69082 -12.66519 -12.52466 -12.46829 -12.21323 -12.12793 -11.68366 -11.46373 -11.27325 -11.07273 -11.04133 -10.93358 -10.76732 -10.63193 -10.61370 -10.20656 -10.14113 -9.89510 -9.58192 -9.55734 -9.12778 -8.90099 -7.23144 -5.76421 -3.11987 2.08935 2.32909 2.82067 2.97988 3.34972 3.38302 3.43907 3.82785 3.90084 4.12485 4.33433 4.36593 4.46869 4.54274 4.58476 4.73921 4.83575 4.88973 4.95587 5.08580 5.11856 5.21188 5.23051 5.25763 5.29707 5.37051 5.47184 5.54184 5.57650 5.63278 5.64721 5.72344 5.79822 5.84659 5.87233 5.90726 5.96974 6.05506 6.21174 6.26882 6.35461 6.43165 6.48119 6.66451 6.74660 7.31611 7.76690 7.99946 8.02941 8.42511 9.21279 9.93385 10.13186 11.42068 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.002503 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.479985 B =11184.384869 C =11563.537317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.146 4.146 4 C -0.081 4.081 5 C -0.112 4.112 6 C 0.536 3.464 7 O -0.526 6.526 8 N -0.720 5.720 9 C 0.127 3.873 10 C -0.115 4.115 11 H 0.075 0.925 12 C -0.142 4.142 13 C 0.165 3.835 14 N -0.754 5.754 15 C -0.243 4.243 16 H 0.091 0.909 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.135 4.135 24 C 0.088 3.912 25 N -0.729 5.729 26 C 0.532 3.468 27 O -0.510 6.510 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.397 0.603 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.089 0.911 48 H 0.111 0.889 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 24.912 -17.100 34.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.126 4.126 3 C -0.204 4.204 4 C -0.119 4.119 5 C -0.119 4.119 6 C 0.320 3.680 7 O -0.402 6.402 8 N -0.371 5.371 9 C 0.004 3.996 10 C -0.135 4.135 11 H 0.094 0.906 12 C -0.200 4.200 13 C 0.038 3.962 14 N -0.400 5.400 15 C -0.373 4.373 16 H 0.109 0.891 17 C -0.193 4.193 18 N -0.582 5.582 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.172 4.172 24 C -0.036 4.036 25 N -0.386 5.386 26 C 0.316 3.684 27 O -0.383 6.383 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.231 0.769 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.108 0.892 48 H 0.129 0.871 49 H 0.104 0.896 50 H 0.108 0.892 51 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.387 25.291 -15.984 33.644 hybrid contribution -0.229 -1.049 -2.027 2.294 sum -15.616 24.242 -18.011 33.999 Atomic orbital electron populations 1.22420 0.94954 1.02624 1.02441 1.21348 0.96208 0.96865 0.98190 1.21839 1.01229 0.95427 1.01863 1.21461 1.03882 0.88391 0.98214 1.21755 0.96794 0.99550 0.93783 1.19646 0.77737 0.82199 0.88423 1.90718 1.50265 1.66865 1.32310 1.45991 1.67386 1.07341 1.16402 1.21436 1.00186 0.91025 0.86966 1.21611 0.97971 0.92917 1.00962 0.90620 1.21812 0.95806 1.01525 1.00836 1.20548 0.97221 0.84970 0.93508 1.42684 1.76444 1.05626 1.15261 1.19068 1.32301 0.90060 0.95843 0.89148 1.24679 1.01019 0.96100 0.97468 1.69703 1.49533 1.04858 1.34116 0.86541 0.78265 0.78146 0.85494 1.21103 1.21728 1.20433 1.23042 0.95949 1.03391 0.94839 1.22496 0.81743 1.03673 0.95707 1.46207 1.07675 1.72131 1.12584 1.20314 0.87500 0.75685 0.84914 1.90830 1.12494 1.50583 1.84414 0.92106 0.92521 0.90921 0.90728 0.92541 0.92637 0.92344 0.89497 0.90132 0.76887 0.90874 0.90940 0.93891 0.92272 0.91733 0.95145 0.95090 0.80664 0.93066 0.89237 0.87100 0.89601 0.89230 0.74610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 7.53 37.16 0.28 -0.40 16 2 C -0.11 -0.67 2.27 -90.62 -0.21 -0.87 16 3 C -0.15 -0.92 9.04 37.16 0.34 -0.59 16 4 C -0.08 -0.71 3.45 -26.74 -0.09 -0.80 16 5 C -0.11 -1.03 0.72 -155.67 -0.11 -1.14 16 6 C 0.54 6.87 6.47 -10.98 -0.07 6.80 16 7 O -0.53 -8.57 16.09 5.56 0.09 -8.48 16 8 N -0.72 -8.58 4.86 -60.29 -0.29 -8.87 16 9 C 0.13 1.73 5.06 -4.04 -0.02 1.71 16 10 C -0.12 -1.70 2.46 -90.62 -0.22 -1.92 16 11 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 12 C -0.14 -1.90 8.94 37.16 0.33 -1.57 16 13 C 0.17 3.17 5.65 -4.04 -0.02 3.15 16 14 N -0.75 -17.91 5.13 -59.91 -0.31 -18.21 16 15 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 16 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 19 Si 0.89 22.12 27.74 -169.99 -4.71 17.41 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 23 C -0.13 -0.70 5.51 -25.10 -0.14 -0.83 16 24 C 0.09 0.31 6.43 -3.12 -0.02 0.29 16 25 N -0.73 -4.48 5.62 -59.20 -0.33 -4.81 16 26 C 0.53 5.52 5.82 -10.86 -0.06 5.46 16 27 O -0.51 -7.74 17.86 5.55 0.10 -7.64 16 28 H 0.06 0.26 7.91 -51.93 -0.41 -0.15 16 29 H 0.06 0.20 8.13 -51.93 -0.42 -0.22 16 30 H 0.07 0.20 3.39 -51.93 -0.18 0.02 16 31 H 0.07 0.49 4.87 -51.93 -0.25 0.23 16 32 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.73 7.71 -51.93 -0.40 0.33 16 36 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 37 H 0.40 4.00 7.05 -40.82 -0.29 3.71 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.99 7.18 -51.93 -0.37 0.62 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.36 8.27 4.71 -40.82 -0.19 8.08 16 46 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 47 H 0.09 0.45 7.35 -51.93 -0.38 0.07 16 48 H 0.11 0.41 5.54 -51.93 -0.29 0.12 16 49 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 50 H 0.09 0.21 4.72 -51.93 -0.25 -0.03 16 51 H 0.41 1.99 8.96 -40.82 -0.37 1.62 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -36.66 387.66 -7.51 -44.17 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.39 Total: 7.26 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.27 Total: 2.17 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.16 Total: -60.73 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.19 Total: -16.12 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.66 -7.51 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.649 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds