Wall clock time and date at job start Tue Mar 31 2020 15:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47159 * 2 1 4 4 H 1.09003 * 109.47448 * 305.00304 * 3 2 1 5 5 O 1.42902 * 109.46791 * 65.00164 * 3 2 1 6 6 C 1.42895 * 114.00204 * 269.99566 * 5 3 2 7 7 C 1.53002 * 109.47308 * 150.00301 * 6 5 3 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 C 1.52997 * 109.47503 * 270.00275 * 6 5 3 12 12 C 1.50699 * 109.47544 * 184.99914 * 3 2 1 13 13 O 1.21274 * 120.00467 * 245.00965 * 12 3 2 14 14 N 1.34780 * 119.99817 * 64.99847 * 12 3 2 15 15 C 1.46496 * 120.00066 * 180.02562 * 14 12 3 16 16 C 1.53004 * 109.46761 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.46979 * 299.99601 * 16 15 14 18 18 C 1.52995 * 109.47342 * 60.00125 * 16 15 14 19 19 C 1.53005 * 109.46663 * 180.02562 * 16 15 14 20 20 C 1.50703 * 109.47064 * 180.02562 * 19 16 15 21 21 H 1.08008 * 119.99630 * 359.97438 * 20 19 16 22 22 C 1.37875 * 120.00361 * 180.02562 * 20 19 16 23 23 N 1.31510 * 120.00244 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99757 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46823 * 90.00231 * 24 22 20 26 26 H 1.48496 * 109.47039 * 210.00448 * 24 22 20 27 27 H 1.48501 * 109.47075 * 330.00381 * 24 22 20 28 28 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47135 * 299.99750 * 1 2 3 30 30 H 1.09006 * 109.47315 * 59.99538 * 1 2 3 31 31 H 1.09003 * 109.47135 * 240.00249 * 2 1 3 32 32 H 1.08993 * 109.46963 * 120.00514 * 2 1 3 33 33 H 1.09002 * 109.47333 * 30.00115 * 6 5 3 34 34 H 1.08992 * 109.47063 * 60.00217 * 7 6 5 35 35 H 1.09004 * 109.46733 * 299.99930 * 7 6 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 37 37 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 40 40 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 41 41 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 42 42 H 1.09002 * 109.47153 * 299.99957 * 11 6 5 43 43 H 1.09001 * 109.47289 * 60.00040 * 11 6 5 44 44 H 0.97009 * 119.99791 * 0.02562 * 14 12 3 45 45 H 1.09000 * 109.47074 * 300.00120 * 15 14 12 46 46 H 1.08996 * 109.47192 * 60.00504 * 15 14 12 47 47 H 1.09001 * 109.47412 * 60.00904 * 17 16 15 48 48 H 1.09007 * 109.47230 * 180.02562 * 17 16 15 49 49 H 1.09004 * 109.47763 * 300.00029 * 17 16 15 50 50 H 1.09000 * 109.47376 * 59.99751 * 18 16 15 51 51 H 1.09005 * 109.47183 * 179.97438 * 18 16 15 52 52 H 1.08996 * 109.47027 * 299.99619 * 18 16 15 53 53 H 1.09000 * 109.47112 * 299.99672 * 19 16 15 54 54 H 1.08996 * 109.47253 * 60.00116 * 19 16 15 55 55 H 0.97004 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0813 1.2211 6 6 0.3928 2.7356 1.1661 7 6 -0.2504 2.7185 2.5543 8 6 -1.6096 3.4185 2.4952 9 6 -1.4182 4.8665 2.0397 10 6 -0.7750 4.8837 0.6516 11 6 0.5847 4.1835 0.7108 12 6 3.5419 1.4443 -0.1238 13 8 4.2250 1.8609 0.7875 14 7 4.1260 0.9828 -1.2473 15 6 5.5860 0.9841 -1.3675 16 6 5.9860 0.4140 -2.7299 17 6 5.4653 -1.0190 -2.8558 18 6 5.3821 1.2756 -3.8406 19 6 7.5109 0.4148 -2.8551 20 6 7.9050 -0.1462 -4.1972 21 1 7.1439 -0.4711 -4.8912 22 6 9.2371 -0.2455 -4.5387 23 7 9.5810 -0.7355 -5.7097 24 14 10.5535 0.3159 -3.3381 25 1 10.9477 -0.8215 -2.4685 26 1 11.7388 0.7965 -4.0924 27 1 10.0201 1.4189 -2.4989 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 -0.2540 2.2153 0.4596 34 1 0.3962 3.2389 3.2607 35 1 -0.3872 1.6869 2.8786 36 1 -2.2562 2.8978 1.7888 37 1 -2.0676 3.4068 3.4843 38 1 -2.3863 5.3654 1.9980 39 1 -0.7716 5.3872 2.7461 40 1 -0.6381 5.9152 0.3272 41 1 -1.4215 4.3630 -0.0549 42 1 1.2314 4.7039 1.4172 43 1 1.0428 4.1957 -0.2782 44 1 3.5796 0.6497 -1.9764 45 1 5.9570 2.0051 -1.2782 46 1 6.0163 0.3706 -0.5760 47 1 4.3789 -1.0201 -2.7664 48 1 5.7506 -1.4254 -3.8262 49 1 5.8955 -1.6330 -2.0645 50 1 5.7531 2.2966 -3.7509 51 1 5.6675 0.8697 -4.8111 52 1 4.2958 1.2746 -3.7512 53 1 7.8824 1.4356 -2.7652 54 1 7.9408 -0.1993 -2.0639 55 1 10.5182 -0.8050 -5.9501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359758708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:22 Heat of formation + Delta-G solvation = -144.199392 kcal Electronic energy + Delta-G solvation = -29113.433633 eV Core-core repulsion = 25341.015044 eV Total energy + Delta-G solvation = -3772.418589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 325.240 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34524 -40.08889 -38.71979 -37.49591 -35.32426 -34.36340 -33.65209 -31.73955 -30.86166 -29.83814 -28.71004 -27.98438 -26.85723 -24.38176 -23.58125 -23.14703 -22.92432 -21.49501 -20.72371 -19.84749 -18.91180 -18.33476 -18.05710 -16.88852 -16.67225 -16.31687 -16.05723 -15.78798 -15.40725 -15.20213 -15.15709 -14.98165 -14.78327 -14.71283 -14.23268 -14.16463 -13.99144 -13.82909 -13.57148 -13.26352 -13.11814 -13.02674 -12.93258 -12.82729 -12.64888 -12.58858 -12.30775 -12.17377 -12.14859 -12.01778 -11.78793 -11.73038 -11.52320 -11.48831 -11.47316 -11.27956 -11.05157 -10.93007 -10.74627 -10.71089 -10.27526 -10.08928 -8.23003 -6.22704 1.34641 1.37763 1.47488 1.56358 1.87082 2.38148 2.88707 3.12387 3.63279 3.75805 3.79753 3.85307 3.91022 3.96468 4.04794 4.06484 4.15418 4.25708 4.29142 4.32258 4.39740 4.51662 4.56341 4.58332 4.63228 4.66550 4.69678 4.77389 4.80548 4.93773 4.94930 5.01238 5.02207 5.08917 5.09988 5.11915 5.17420 5.23574 5.24333 5.29088 5.30236 5.34849 5.36179 5.40597 5.42020 5.45202 5.52063 5.55498 5.69605 5.76176 6.20116 6.37495 6.57889 6.83982 7.22859 7.39960 8.92346 Molecular weight = 325.24amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.002308 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.779432 B =12130.752665 C =12410.542235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.079 3.921 4 H 0.109 0.891 5 O -0.378 6.378 6 C 0.077 3.923 7 C -0.116 4.116 8 C -0.111 4.111 9 C -0.124 4.124 10 C -0.113 4.113 11 C -0.145 4.145 12 C 0.506 3.494 13 O -0.577 6.577 14 N -0.705 5.705 15 C 0.139 3.861 16 C -0.057 4.057 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.005 4.005 20 C -0.500 4.500 21 H 0.055 0.945 22 C 0.006 3.994 23 N -0.949 5.949 24 Si 0.932 3.068 25 H -0.272 1.272 26 H -0.288 1.288 27 H -0.254 1.254 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.414 0.586 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.071 0.929 48 H 0.047 0.953 49 H 0.043 0.957 50 H 0.043 0.957 51 H 0.047 0.953 52 H 0.071 0.929 53 H 0.013 0.987 54 H 0.012 0.988 55 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.492 6.829 13.162 32.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.018 3.982 4 H 0.127 0.873 5 O -0.297 6.297 6 C 0.020 3.980 7 C -0.153 4.153 8 C -0.148 4.148 9 C -0.161 4.161 10 C -0.150 4.150 11 C -0.183 4.183 12 C 0.293 3.707 13 O -0.456 6.456 14 N -0.360 5.360 15 C 0.015 3.985 16 C -0.057 4.057 17 C -0.182 4.182 18 C -0.182 4.182 19 C -0.043 4.043 20 C -0.538 4.538 21 H 0.073 0.927 22 C -0.191 4.191 23 N -0.591 5.591 24 Si 0.757 3.243 25 H -0.198 1.198 26 H -0.214 1.214 27 H -0.178 1.178 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.252 0.748 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.066 0.934 52 H 0.090 0.910 53 H 0.031 0.969 54 H 0.030 0.970 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.749 7.094 13.881 31.828 hybrid contribution 1.438 0.014 -0.283 1.466 sum -26.311 7.108 13.598 30.458 Atomic orbital electron populations 1.21951 0.93148 1.03435 1.02758 1.22023 0.98531 0.93430 1.03719 1.22022 0.89783 0.96459 0.89907 0.87298 1.88062 1.38007 1.70989 1.32593 1.22619 0.84123 0.92092 0.99136 1.21594 0.96917 1.01564 0.95245 1.21498 0.95295 0.95454 1.02588 1.21596 1.01178 0.96916 0.96417 1.21496 0.94890 1.00670 0.97978 1.22098 0.98690 0.96458 1.01055 1.21095 0.91123 0.76729 0.81797 1.90688 1.66415 1.47778 1.40679 1.45898 1.07626 1.64124 1.18318 1.21285 0.79855 1.00215 0.97160 1.20545 0.95921 0.96382 0.92862 1.21718 1.00133 0.94696 1.01641 1.21712 0.99761 0.98541 0.98152 1.19580 0.93081 0.96045 0.95562 1.21353 0.92210 1.39435 1.00771 0.92707 1.25812 1.01178 0.95510 0.96570 1.70032 1.17697 1.48479 1.22904 0.85927 0.79000 0.79693 0.79633 1.19777 1.21435 1.17783 0.90976 0.92006 0.90861 0.88898 0.92076 0.89017 0.92892 0.91126 0.90450 0.90575 0.90368 0.92798 0.91435 0.90514 0.93266 0.92324 0.74786 0.92958 0.92834 0.90999 0.93417 0.93735 0.93818 0.93387 0.91048 0.96876 0.96985 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.58 71.98 0.62 -1.01 16 2 C -0.14 -2.15 5.61 30.59 0.17 -1.98 16 3 C 0.08 1.61 2.64 29.85 0.08 1.69 16 4 H 0.11 1.62 7.62 -2.39 -0.02 1.60 16 5 O -0.38 -9.12 9.10 -129.99 -1.18 -10.30 16 6 C 0.08 1.27 1.37 30.59 0.04 1.31 16 7 C -0.12 -1.72 5.44 30.60 0.17 -1.55 16 8 C -0.11 -1.08 5.92 30.59 0.18 -0.90 16 9 C -0.12 -1.27 5.92 30.59 0.18 -1.08 16 10 C -0.11 -1.28 5.92 30.61 0.18 -1.10 16 11 C -0.15 -2.42 5.54 30.61 0.17 -2.25 16 12 C 0.51 14.50 7.18 87.66 0.63 15.13 16 13 O -0.58 -22.72 16.51 15.98 0.26 -22.45 16 14 N -0.71 -17.94 4.86 -463.07 -2.25 -20.19 16 15 C 0.14 4.49 4.56 86.38 0.39 4.88 16 16 C -0.06 -1.98 0.54 -52.18 -0.03 -2.01 16 17 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 18 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 19 C 0.00 -0.22 3.11 29.85 0.09 -0.12 16 20 C -0.50 -26.96 8.20 25.60 0.21 -26.75 16 21 H 0.05 3.16 5.92 -2.91 -0.02 3.14 16 22 C 0.01 0.32 5.47 84.65 0.46 0.79 16 23 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16 24 Si 0.93 44.70 27.47 68.60 1.88 46.58 16 25 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.69 5.54 -2.39 -0.01 0.68 16 30 H 0.07 0.54 8.01 -2.38 -0.02 0.52 16 31 H 0.09 1.16 7.77 -2.39 -0.02 1.14 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.10 5.23 -2.39 -0.01 1.09 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.01 7.88 -2.39 -0.02 0.99 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.00 7.96 -2.39 -0.02 0.98 16 44 H 0.41 7.86 5.87 -92.70 -0.54 7.32 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 48 H 0.05 1.79 6.62 -2.38 -0.02 1.78 16 49 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.05 1.81 6.62 -2.38 -0.02 1.79 16 52 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 53 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 54 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 55 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -72.17 410.59 3.97 -68.20 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.24 Total: 18.05 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 4.71 Total: -21.84 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -1.95 Total: -78.24 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.92 Total: -32.75 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -72.17 3.97 -68.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359758708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.997 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds