Wall clock time and date at job start Tue Mar 31 2020 14:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86804 * 119.99820 * 2 1 4 4 H 1.48491 * 109.47308 * 269.99826 * 3 2 1 5 5 H 1.48502 * 109.46898 * 29.99882 * 3 2 1 6 6 H 1.48499 * 109.47232 * 149.99492 * 3 2 1 7 7 C 1.40056 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00203 * 174.92642 * 7 2 1 9 9 C 1.41284 * 119.99921 * 354.93111 * 7 2 1 10 10 C 1.40739 * 120.15845 * 185.66306 * 9 7 2 11 11 N 1.31897 * 119.91400 * 179.97438 * 10 9 7 12 12 C 1.32174 * 120.26201 * 359.72658 * 11 10 9 13 13 C 1.39842 * 120.33051 * 0.52688 * 12 11 10 14 14 N 1.39125 * 119.95974 * 179.75161 * 13 12 11 15 15 C 1.37264 * 119.99916 * 185.73365 * 14 13 12 16 16 N 1.29298 * 119.99716 * 355.19389 * 15 14 13 17 17 C 1.50700 * 120.00175 * 175.19980 * 15 14 13 18 18 C 1.53002 * 109.47167 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47099 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47099 * 180.02562 * 19 18 17 21 21 Br 1.96601 * 109.47180 * 180.02562 * 20 19 18 22 22 N 1.32240 * 120.07683 * 359.47453 * 13 12 11 23 23 H 0.97000 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.04538 * 359.95104 * 10 9 7 25 25 H 1.08005 * 119.83860 * 180.25969 * 12 11 10 26 26 H 0.97001 * 120.00221 * 5.99779 * 14 13 12 27 27 H 0.97001 * 119.99801 * 180.02562 * 16 15 14 28 28 H 1.09001 * 109.46803 * 299.99529 * 17 15 14 29 29 H 1.08992 * 109.47042 * 59.99510 * 17 15 14 30 30 H 1.09001 * 109.46818 * 300.00034 * 18 17 15 31 31 H 1.08999 * 109.46959 * 59.99397 * 18 17 15 32 32 H 1.09001 * 109.47579 * 299.99894 * 19 18 17 33 33 H 1.09001 * 109.47084 * 60.00705 * 19 18 17 34 34 H 1.09001 * 109.47248 * 300.00040 * 20 19 18 35 35 H 1.08999 * 109.47405 * 60.00015 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4386 2.6527 0.7000 6 1 3.5387 1.4403 0.7001 7 6 2.0076 -1.2129 0.0005 8 1 3.0844 -1.2147 -0.0822 9 6 1.3054 -2.4340 0.1092 10 6 2.0098 -3.6464 0.2300 11 7 1.3493 -4.7836 0.3316 12 6 0.0276 -4.7891 0.3259 13 6 -0.6830 -3.5911 0.2012 14 7 -2.0741 -3.6063 0.1909 15 6 -2.7714 -2.4486 -0.0491 16 7 -2.1395 -1.3274 -0.1733 17 6 -4.2733 -2.4843 -0.1676 18 6 -4.7977 -1.0716 -0.4328 19 6 -6.3224 -1.1080 -0.5539 20 6 -6.8467 0.3046 -0.8197 21 35 -8.8061 0.2580 -0.9744 22 7 -0.0343 -2.4434 0.0984 23 1 -0.4851 0.8400 -0.0004 24 1 3.0898 -3.6458 0.2390 25 1 -0.5063 -5.7238 0.4138 26 1 -2.5514 -4.4343 0.3572 27 1 -2.6323 -0.5092 -0.3425 28 1 -4.5571 -3.1383 -0.9921 29 1 -4.7021 -2.8624 0.7603 30 1 -4.5137 -0.4179 0.3919 31 1 -4.3688 -0.6931 -1.3607 32 1 -6.6060 -1.7616 -1.3788 33 1 -6.7516 -1.4866 0.3738 34 1 -6.5632 0.9586 0.0049 35 1 -6.4176 0.6829 -1.7475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160791107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:42 Heat of formation + Delta-G solvation = 81.167978 kcal Electronic energy + Delta-G solvation = -19291.640592 eV Core-core repulsion = 16178.810606 eV Total energy + Delta-G solvation = -3112.829986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 326.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.02570 -37.54208 -35.41277 -33.85531 -32.74843 -31.22230 -30.63429 -29.05457 -28.23095 -25.82379 -24.35473 -22.51743 -21.67501 -21.20163 -19.10758 -17.75175 -16.32459 -16.10469 -15.59444 -14.97052 -14.66145 -14.48260 -14.35721 -14.09017 -13.71031 -13.22264 -12.98069 -12.79156 -12.23148 -11.56451 -11.39184 -11.33232 -11.28322 -11.22801 -11.16535 -10.75148 -10.61173 -10.31531 -10.11492 -10.10396 -9.62450 -9.23331 -8.97452 -8.13569 -8.07692 -6.81704 -6.75335 -6.16615 -4.48895 1.43154 2.70173 3.07812 3.10932 3.14496 3.37360 3.72241 3.86645 3.98263 4.42043 4.48771 4.75998 4.86919 5.01776 5.12043 5.21246 5.52737 5.53589 5.59048 5.76166 6.00198 6.04930 6.05754 6.12148 6.32941 6.42174 6.64174 6.94431 7.19843 7.26882 7.72888 7.97030 8.10144 8.39845 8.69057 8.92162 9.44030 9.57143 10.15458 10.34870 Molecular weight = 326.04amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.002792 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.838288 B =10025.139646 C =11697.554962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.409 4.409 8 H 0.085 0.915 9 C 0.224 3.776 10 C -0.107 4.107 11 N -0.411 5.411 12 C -0.166 4.166 13 C 0.344 3.656 14 N -0.643 5.643 15 C 0.342 3.658 16 N -0.607 5.607 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.075 4.075 21 Br -0.173 7.173 22 N -0.429 5.429 23 H 0.266 0.734 24 H 0.127 0.873 25 H 0.117 0.883 26 H 0.407 0.593 27 H 0.320 0.680 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.416 3.224 -1.586 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.260 5.260 2 C -0.173 4.173 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.441 4.441 8 H 0.104 0.896 9 C 0.097 3.903 10 C -0.278 4.278 11 N -0.122 5.122 12 C -0.328 4.328 13 C 0.101 3.899 14 N -0.275 5.275 15 C 0.055 3.945 16 N -0.230 5.230 17 C -0.166 4.166 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.190 4.190 21 Br -0.093 7.093 22 N -0.152 5.152 23 H 0.078 0.922 24 H 0.145 0.855 25 H 0.135 0.865 26 H 0.241 0.759 27 H 0.137 0.863 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.263 3.764 -1.634 18.719 hybrid contribution -0.503 0.632 -0.009 0.808 sum -18.766 4.396 -1.643 19.344 Atomic orbital electron populations 1.70510 1.05659 1.26507 1.23347 1.26211 0.95235 1.00576 0.95238 0.86513 0.80769 0.81664 0.79029 1.19665 1.20374 1.18639 1.19547 0.94497 0.89285 1.40745 0.89648 1.19354 0.88488 0.93124 0.89359 1.22950 0.98881 0.89519 1.16418 1.67518 1.07858 1.30271 1.06574 1.21792 0.90914 0.95367 1.24732 1.19571 0.84226 0.92376 0.93773 1.41439 1.03369 1.08448 1.74278 1.21480 0.87118 0.89318 0.96612 1.70165 1.38318 0.97830 1.16681 1.21412 0.94754 0.97669 1.02761 1.21600 0.94084 0.97242 1.02878 1.21752 0.95863 0.94333 1.03472 1.24824 0.85772 1.01865 1.06572 1.97384 1.13386 1.99443 1.99076 1.69665 1.06470 1.20687 1.18348 0.92228 0.85536 0.86524 0.75861 0.86283 0.90455 0.90538 0.90995 0.91025 0.90605 0.90604 0.88132 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -16.01 9.07 55.55 0.50 -15.51 16 2 C 0.06 1.40 5.49 -17.34 -0.10 1.31 16 3 Si 0.90 18.06 29.56 -169.99 -5.03 13.04 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.41 -10.75 9.15 -37.74 -0.35 -11.09 16 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.22 6.16 6.54 -84.83 -0.55 5.61 16 10 C -0.11 -2.81 10.97 -16.58 -0.18 -2.99 16 11 N -0.41 -10.54 10.47 -12.12 -0.13 -10.67 16 12 C -0.17 -3.95 11.09 -16.80 -0.19 -4.14 16 13 C 0.34 8.26 7.44 -154.77 -1.15 7.11 16 14 N -0.64 -12.00 5.48 -9.28 -0.05 -12.05 16 15 C 0.34 5.99 7.80 -154.33 -1.20 4.78 16 16 N -0.61 -12.47 8.82 32.94 0.29 -12.18 16 17 C -0.12 -1.42 5.73 -27.88 -0.16 -1.58 16 18 C -0.12 -1.19 3.96 -26.73 -0.11 -1.30 16 19 C -0.12 -0.92 5.27 -26.73 -0.14 -1.06 16 20 C -0.07 -0.56 6.61 37.16 0.25 -0.32 16 21 Br -0.17 -1.55 33.93 -68.01 -2.31 -3.86 16 22 N -0.43 -11.54 5.79 -10.09 -0.06 -11.60 16 23 H 0.27 6.05 8.29 -40.82 -0.34 5.71 16 24 H 0.13 3.05 8.06 -52.48 -0.42 2.62 16 25 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 26 H 0.41 5.90 8.74 -40.82 -0.36 5.55 16 27 H 0.32 5.80 6.30 -40.82 -0.26 5.55 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -31.10 316.01 -10.23 -41.33 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.34 Total: 10.42 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.88 Total: -3.68 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.56 Total: -62.01 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 35 Polarization: -1.55 SS G_CDS: -2.31 Total: -3.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.10 -10.23 -41.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160791107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.500 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds