Wall clock time and date at job start Tue Mar 31 2020 14:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86804 * 119.99820 * 2 1 4 4 H 1.48491 * 109.47308 * 269.99826 * 3 2 1 5 5 H 1.48502 * 109.46898 * 29.99882 * 3 2 1 6 6 H 1.48499 * 109.47232 * 149.99492 * 3 2 1 7 7 C 1.40056 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00203 * 174.92642 * 7 2 1 9 9 C 1.41284 * 119.99921 * 354.93111 * 7 2 1 10 10 C 1.40739 * 120.15845 * 185.66306 * 9 7 2 11 11 N 1.31897 * 119.91400 * 179.97438 * 10 9 7 12 12 C 1.32174 * 120.26201 * 359.72658 * 11 10 9 13 13 C 1.39842 * 120.33051 * 0.52688 * 12 11 10 14 14 N 1.39125 * 119.95974 * 179.75161 * 13 12 11 15 15 C 1.37264 * 119.99916 * 185.73365 * 14 13 12 16 16 N 1.29298 * 119.99716 * 355.19389 * 15 14 13 17 17 C 1.50700 * 120.00175 * 175.19980 * 15 14 13 18 18 C 1.53002 * 109.47167 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47099 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47099 * 180.02562 * 19 18 17 21 21 Br 1.96601 * 109.47180 * 180.02562 * 20 19 18 22 22 N 1.32240 * 120.07683 * 359.47453 * 13 12 11 23 23 H 0.97000 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.04538 * 359.95104 * 10 9 7 25 25 H 1.08005 * 119.83860 * 180.25969 * 12 11 10 26 26 H 0.97001 * 120.00221 * 5.99779 * 14 13 12 27 27 H 0.97001 * 119.99801 * 180.02562 * 16 15 14 28 28 H 1.09001 * 109.46803 * 299.99529 * 17 15 14 29 29 H 1.08992 * 109.47042 * 59.99510 * 17 15 14 30 30 H 1.09001 * 109.46818 * 300.00034 * 18 17 15 31 31 H 1.08999 * 109.46959 * 59.99397 * 18 17 15 32 32 H 1.09001 * 109.47579 * 299.99894 * 19 18 17 33 33 H 1.09001 * 109.47084 * 60.00705 * 19 18 17 34 34 H 1.09001 * 109.47248 * 300.00040 * 20 19 18 35 35 H 1.08999 * 109.47405 * 60.00015 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4386 2.6527 0.7000 6 1 3.5387 1.4403 0.7001 7 6 2.0076 -1.2129 0.0005 8 1 3.0844 -1.2147 -0.0822 9 6 1.3054 -2.4340 0.1092 10 6 2.0098 -3.6464 0.2300 11 7 1.3493 -4.7836 0.3316 12 6 0.0276 -4.7891 0.3259 13 6 -0.6830 -3.5911 0.2012 14 7 -2.0741 -3.6063 0.1909 15 6 -2.7714 -2.4486 -0.0491 16 7 -2.1395 -1.3274 -0.1733 17 6 -4.2733 -2.4843 -0.1676 18 6 -4.7977 -1.0716 -0.4328 19 6 -6.3224 -1.1080 -0.5539 20 6 -6.8467 0.3046 -0.8197 21 35 -8.8061 0.2580 -0.9744 22 7 -0.0343 -2.4434 0.0984 23 1 -0.4851 0.8400 -0.0004 24 1 3.0898 -3.6458 0.2390 25 1 -0.5063 -5.7238 0.4138 26 1 -2.5514 -4.4343 0.3572 27 1 -2.6323 -0.5092 -0.3425 28 1 -4.5571 -3.1383 -0.9921 29 1 -4.7021 -2.8624 0.7603 30 1 -4.5137 -0.4179 0.3919 31 1 -4.3688 -0.6931 -1.3607 32 1 -6.6060 -1.7616 -1.3788 33 1 -6.7516 -1.4866 0.3738 34 1 -6.5632 0.9586 0.0049 35 1 -6.4176 0.6829 -1.7475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160791107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:42 Heat of formation + Delta-G solvation = 63.558775 kcal Electronic energy + Delta-G solvation = -19292.404184 eV Core-core repulsion = 16178.810606 eV Total energy + Delta-G solvation = -3113.593578 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 326.044 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.81823 -38.88216 -36.49983 -35.69733 -34.07571 -33.05720 -31.58127 -30.82384 -29.14591 -27.70046 -25.50252 -24.12078 -23.25765 -22.22248 -20.56199 -19.54164 -18.04341 -17.23049 -16.85768 -16.84023 -16.32865 -15.82483 -15.60895 -15.35006 -14.74977 -14.73275 -14.43154 -13.68311 -13.38457 -13.19490 -13.11791 -12.89965 -12.47113 -12.38010 -12.35669 -12.02087 -11.94969 -11.62994 -11.47186 -11.16470 -10.78891 -10.75538 -10.69031 -9.92409 -9.68280 -8.52522 -8.47158 -8.00583 -6.44383 0.80842 0.86202 1.35318 1.46607 1.55478 1.60465 2.28338 2.29548 2.45999 3.01730 3.66945 3.85868 3.87118 4.06528 4.26071 4.27829 4.38164 4.39217 4.56079 4.61983 4.71248 4.78643 4.81016 4.91101 5.00159 5.16046 5.23057 5.30318 5.31775 5.45776 5.91355 6.17542 6.42811 6.76923 6.83301 7.05435 7.54977 8.10293 8.34541 8.53519 Molecular weight = 326.04amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.002792 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.838288 B =10025.139646 C =11697.554962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C 0.013 3.987 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.436 4.436 8 H 0.089 0.911 9 C 0.192 3.808 10 C -0.140 4.140 11 N -0.422 5.422 12 C -0.170 4.170 13 C 0.335 3.665 14 N -0.632 5.632 15 C 0.338 3.662 16 N -0.658 5.658 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.106 4.106 20 C -0.071 4.071 21 Br -0.185 7.185 22 N -0.450 5.450 23 H 0.274 0.726 24 H 0.133 0.867 25 H 0.152 0.848 26 H 0.427 0.573 27 H 0.328 0.672 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 3.658 -1.578 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.276 5.276 2 C -0.215 4.215 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.107 0.893 9 C 0.065 3.935 10 C -0.308 4.308 11 N -0.133 5.133 12 C -0.333 4.333 13 C 0.089 3.911 14 N -0.266 5.266 15 C 0.052 3.948 16 N -0.282 5.282 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.187 4.187 21 Br -0.105 7.105 22 N -0.174 5.174 23 H 0.085 0.915 24 H 0.151 0.849 25 H 0.169 0.831 26 H 0.265 0.735 27 H 0.146 0.854 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.926 4.175 -1.625 20.423 hybrid contribution -0.101 0.425 -0.013 0.436 sum -20.027 4.599 -1.638 20.613 Atomic orbital electron populations 1.70627 1.06803 1.27866 1.22333 1.26961 0.96283 1.03443 0.94855 0.85316 0.79163 0.76890 0.79011 1.19253 1.19462 1.18627 1.19890 0.94993 0.90172 1.41709 0.89265 1.19779 0.89460 0.94027 0.90226 1.23034 0.99369 0.89715 1.18676 1.67513 1.08961 1.30123 1.06739 1.22379 0.90636 0.96871 1.23448 1.19975 0.86464 0.91876 0.92793 1.41499 1.01522 1.10113 1.73515 1.22088 0.89762 0.88222 0.94751 1.70036 1.40544 0.99205 1.18384 1.21351 0.89961 0.99128 1.04666 1.21510 0.95438 0.96101 1.02085 1.21648 0.94036 0.94655 1.04048 1.24848 0.84748 1.01879 1.07194 1.97391 1.14598 1.99443 1.99097 1.69731 1.06288 1.22084 1.19342 0.91519 0.84921 0.83095 0.73492 0.85382 0.88471 0.88338 0.91793 0.91967 0.90044 0.89957 0.87534 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -33.08 9.07 21.84 0.20 -32.88 16 2 C 0.01 0.63 5.49 85.30 0.47 1.10 16 3 Si 0.97 37.16 29.56 68.60 2.03 39.18 16 4 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.44 -23.52 9.15 23.46 0.21 -23.30 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.19 10.86 6.54 40.18 0.26 11.12 16 10 C -0.14 -7.53 10.97 85.29 0.94 -6.60 16 11 N -0.42 -21.82 10.47 -192.26 -2.01 -23.84 16 12 C -0.17 -7.98 11.09 85.03 0.94 -7.04 16 13 C 0.33 15.96 7.44 133.24 0.99 16.95 16 14 N -0.63 -22.60 5.48 -183.26 -1.00 -23.61 16 15 C 0.34 11.33 7.80 137.75 1.07 12.41 16 16 N -0.66 -26.82 8.82 -49.70 -0.44 -27.26 16 17 C -0.11 -2.20 5.73 29.85 0.17 -2.03 16 18 C -0.11 -2.01 3.96 30.59 0.12 -1.88 16 19 C -0.11 -1.39 5.27 30.59 0.16 -1.23 16 20 C -0.07 -0.93 6.61 71.98 0.48 -0.45 16 21 Br -0.19 -3.01 33.93 -20.37 -0.69 -3.70 16 22 N -0.45 -24.61 5.79 -185.84 -1.08 -25.69 16 23 H 0.27 12.42 8.29 -92.71 -0.77 11.65 16 24 H 0.13 6.67 8.06 -2.91 -0.02 6.65 16 25 H 0.15 5.83 8.06 -2.91 -0.02 5.81 16 26 H 0.43 11.28 8.74 -92.71 -0.81 10.47 16 27 H 0.33 11.86 6.30 -92.71 -0.58 11.28 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 31 H 0.06 1.24 7.68 -2.39 -0.02 1.23 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -68.24 316.01 2.56 -65.68 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.27 Total: 33.06 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.82 Total: -0.95 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -4.33 Total: -133.27 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 35 Polarization: -3.01 SS G_CDS: -0.69 Total: -3.70 kcal Total: -68.24 2.56 -65.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160791107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.239 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds