Wall clock time and date at job start Tue Mar 31 2020 14:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00385 * 2 1 4 4 H 1.48494 * 109.47521 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47060 * 300.00350 * 3 2 1 6 6 H 1.48499 * 109.47275 * 59.99978 * 3 2 1 7 7 C 1.38817 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99969 * 192.27447 * 7 2 1 9 9 N 1.36937 * 119.99649 * 12.27072 * 7 2 1 10 10 C 1.47163 * 120.70764 * 26.68374 * 9 7 2 11 11 C 1.53893 * 108.03015 * 132.73351 * 10 9 7 12 12 H 1.09004 * 112.57629 * 182.21926 * 11 10 9 13 13 C 1.54548 * 107.82694 * 306.49416 * 11 10 9 14 14 C 1.54278 * 104.94178 * 89.01788 * 13 11 10 15 15 C 1.54800 * 104.73285 * 0.08416 * 14 13 11 16 16 H 1.08990 * 112.69347 * 146.64123 * 15 14 13 17 17 C 1.47164 * 120.70935 * 206.65418 * 9 7 2 18 18 N 1.48304 * 107.20947 * 58.35368 * 11 10 9 19 19 C 1.34774 * 128.07691 * 106.70876 * 18 11 10 20 20 O 1.21719 * 120.00415 * 173.56381 * 19 18 11 21 21 C 1.46443 * 119.99918 * 353.56048 * 19 18 11 22 22 S 1.75828 * 125.46402 * 353.13877 * 21 19 18 23 23 C 1.70608 * 91.58683 * 179.97438 * 22 21 19 24 24 C 1.33765 * 110.99809 * 359.97438 * 23 22 21 25 25 C 1.36797 * 125.45905 * 172.83103 * 21 19 18 26 26 Cl 1.73595 * 123.38149 * 359.97438 * 25 21 19 27 27 H 0.97001 * 119.99707 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.74986 * 13.09795 * 10 9 7 29 29 H 1.09001 * 109.74813 * 252.35765 * 10 9 7 30 30 H 1.09007 * 110.36002 * 207.91068 * 13 11 10 31 31 H 1.08992 * 110.36709 * 330.11695 * 13 11 10 32 32 H 1.09000 * 110.36740 * 118.89773 * 14 13 11 33 33 H 1.08998 * 110.36412 * 241.21718 * 14 13 11 34 34 H 1.08997 * 109.74943 * 107.63878 * 17 9 7 35 35 H 1.09005 * 109.78880 * 346.92558 * 17 9 7 36 36 H 1.08002 * 124.49804 * 179.97438 * 23 22 21 37 37 H 1.08007 * 122.45109 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0717 -1.2130 0.1983 9 7 1.3489 -2.3744 -0.2531 10 6 0.1227 -2.3852 -1.0668 11 6 0.2495 -3.5147 -2.1043 12 1 -0.6078 -3.5645 -2.7756 13 6 1.5773 -3.3089 -2.8679 14 6 2.6322 -4.0782 -2.0461 15 6 1.8430 -4.6819 -0.8591 16 1 2.2352 -5.6478 -0.5412 17 6 1.8496 -3.6503 0.2828 18 7 0.4485 -4.7788 -1.3547 19 6 -0.4323 -5.7816 -1.1675 20 8 -0.0765 -6.8104 -0.6230 21 6 -1.8174 -5.6334 -1.6192 22 16 -2.5283 -4.1598 -2.2631 23 6 -4.0365 -4.9267 -2.4821 24 6 -3.9855 -6.2050 -2.0912 25 6 -2.7639 -6.6210 -1.6135 26 17 -2.4558 -8.2362 -1.0568 27 1 -0.4850 0.8401 0.0004 28 1 0.0102 -1.4282 -1.5761 29 1 -0.7415 -2.5673 -0.4280 30 1 1.5044 -3.7227 -3.8738 31 1 1.8293 -2.2494 -2.9118 32 1 3.0782 -4.8702 -2.6477 33 1 3.4019 -3.3966 -1.6841 34 1 1.2012 -3.9904 1.0902 35 1 2.8655 -3.5205 0.6560 36 1 -4.9155 -4.4443 -2.8832 37 1 -4.8396 -6.8635 -2.1498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017576216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:14 Heat of formation + Delta-G solvation = 40.224345 kcal Electronic energy + Delta-G solvation = -24089.342740 eV Core-core repulsion = 20599.625111 eV Total energy + Delta-G solvation = -3489.717629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 326.060 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.20787 -38.48775 -37.14739 -35.92515 -34.16619 -31.83427 -30.90315 -30.52759 -29.38563 -26.41186 -24.94089 -23.74274 -23.08056 -21.59155 -20.47660 -19.14984 -19.02260 -17.97476 -16.48749 -16.03495 -15.86483 -15.18347 -14.78903 -14.64183 -14.27662 -13.64536 -13.50531 -13.38067 -13.08423 -12.91954 -12.84598 -12.64892 -12.17947 -11.98063 -11.63488 -11.39003 -11.32465 -11.00275 -10.92909 -10.70430 -10.56312 -10.41081 -10.37780 -10.02655 -9.87116 -9.74944 -9.54541 -8.87503 -8.66128 -8.44040 -8.22173 -6.77947 -5.89036 -3.33095 0.46637 1.27634 1.82156 2.25396 2.57926 3.23801 3.30123 3.38871 3.40021 3.43172 4.38817 4.65876 4.95566 4.99880 5.11678 5.24778 5.29374 5.34733 5.52580 5.63820 5.68546 5.76148 5.88328 5.96805 6.04694 6.08343 6.22158 6.31359 6.35950 6.48767 6.68258 6.78061 6.89523 7.11707 7.40903 7.67079 7.97472 8.28472 8.46273 9.07900 9.69204 10.26234 11.19270 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.004531 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.902633 B = 6178.154126 C = 6956.026742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.173 3.827 11 C 0.088 3.912 12 H 0.082 0.918 13 C -0.109 4.109 14 C -0.111 4.111 15 C 0.119 3.881 16 H 0.093 0.907 17 C 0.136 3.864 18 N -0.604 5.604 19 C 0.601 3.399 20 O -0.529 6.529 21 C -0.256 4.256 22 S 0.288 5.712 23 C -0.257 4.257 24 C -0.147 4.147 25 C 0.009 3.991 26 Cl -0.025 7.025 27 H 0.255 0.745 28 H 0.100 0.900 29 H 0.027 0.973 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.172 0.828 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -8.475 -7.952 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.018 4.018 12 H 0.099 0.901 13 C -0.148 4.148 14 C -0.149 4.149 15 C 0.015 3.985 16 H 0.111 0.889 17 C 0.009 3.991 18 N -0.337 5.337 19 C 0.389 3.611 20 O -0.408 6.408 21 C -0.378 4.378 22 S 0.556 5.444 23 C -0.394 4.394 24 C -0.178 4.178 25 C -0.033 4.033 26 Cl 0.004 6.996 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.189 0.811 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.654 -7.612 -7.849 11.883 hybrid contribution -0.549 -0.645 0.332 0.910 sum -5.203 -8.257 -7.517 12.319 Atomic orbital electron populations 1.69968 1.05189 1.25513 1.54557 1.25056 0.95410 0.98317 1.00726 0.86183 0.79251 0.83793 0.77315 1.20255 1.21550 1.21719 1.19247 0.91414 0.83719 1.43470 0.91211 1.44038 1.28179 1.02002 1.56771 1.21389 0.88645 0.95077 0.90294 1.23708 0.97402 0.85589 0.95070 0.90128 1.22301 0.93614 1.02184 0.96679 1.22345 0.97969 0.98808 0.95806 1.22985 0.80107 0.99380 0.96028 0.88853 1.21498 0.98468 0.86638 0.92526 1.49058 1.14010 1.18270 1.52390 1.16280 0.82473 0.82617 0.79696 1.90833 1.78267 1.27301 1.44417 1.24616 0.99436 0.98671 1.15107 1.84049 0.97755 1.08536 1.54056 1.25701 1.06286 0.99766 1.07656 1.19642 0.97289 0.96494 1.04344 1.20248 0.93521 0.88137 1.01423 1.98376 1.95873 1.18059 1.87335 0.93502 0.88166 0.95475 0.92851 0.89154 0.92667 0.89687 0.95995 0.91569 0.81065 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.33 10.94 55.49 0.61 -23.72 16 2 C 0.00 0.08 5.05 -17.43 -0.09 -0.01 16 3 Si 0.90 20.31 29.57 -169.99 -5.03 15.29 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.21 9.66 -15.06 -0.15 -6.36 16 8 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 9 N -0.59 -13.39 2.29 -171.07 -0.39 -13.78 16 10 C 0.17 3.71 4.47 -3.22 -0.01 3.69 16 11 C 0.09 1.54 3.18 -65.66 -0.21 1.33 16 12 H 0.08 1.27 4.64 -28.17 -0.13 1.14 16 13 C -0.11 -1.76 6.18 -25.25 -0.16 -1.92 16 14 C -0.11 -1.76 6.20 -25.11 -0.16 -1.91 16 15 C 0.12 2.12 4.14 -65.52 -0.27 1.85 16 16 H 0.09 1.62 7.90 -51.93 -0.41 1.21 16 17 C 0.14 2.76 6.01 -3.22 -0.02 2.74 16 18 N -0.60 -11.14 2.74 -154.48 -0.42 -11.57 16 19 C 0.60 11.54 7.86 -12.96 -0.10 11.44 16 20 O -0.53 -11.25 15.43 5.17 0.08 -11.17 16 21 C -0.26 -4.28 6.37 -36.80 -0.23 -4.51 16 22 S 0.29 3.94 18.73 -107.50 -2.01 1.93 16 23 C -0.26 -2.90 10.92 29.16 0.32 -2.58 16 24 C -0.15 -1.80 10.06 -41.38 -0.42 -2.22 16 25 C 0.01 0.14 6.39 -40.33 -0.26 -0.11 16 26 Cl -0.03 -0.39 27.27 -51.86 -1.41 -1.80 16 27 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.10 2.36 6.21 -51.93 -0.32 2.03 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.09 1.57 7.84 -51.93 -0.41 1.16 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.39 7.84 -51.93 -0.41 0.98 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 1.26 7.97 -51.93 -0.41 0.85 16 36 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.15 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -29.06 322.01 -9.66 -38.71 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.17 Total: -0.18 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.75 Total: 1.44 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.21 Total: -49.07 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.29 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.01 Total: 1.93 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.41 Total: -1.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.06 -9.66 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017576216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.937 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds