Wall clock time and date at job start Tue Mar 31 2020 14:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38241 * 119.99317 * 2 1 4 4 C 1.38201 * 120.02997 * 179.97438 * 3 2 1 5 5 C 1.38389 * 120.00878 * 0.26251 * 4 3 2 6 6 Cl 1.73601 * 120.00453 * 179.71565 * 5 4 3 7 7 C 1.38309 * 119.98521 * 359.51170 * 5 4 3 8 8 C 1.50700 * 120.01137 * 180.25278 * 7 5 4 9 9 N 1.46897 * 109.47285 * 270.23470 * 8 7 5 10 10 C 1.46900 * 111.00263 * 190.00405 * 9 8 7 11 11 C 1.50693 * 109.47466 * 159.81141 * 10 9 8 12 12 H 1.08003 * 120.00110 * 357.75722 * 11 10 9 13 13 C 1.37873 * 120.00277 * 177.75421 * 11 10 9 14 14 N 1.31515 * 120.00474 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00062 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46913 * 89.99556 * 15 13 11 17 17 H 1.48499 * 109.47591 * 209.99950 * 15 13 11 18 18 H 1.48507 * 109.47109 * 330.00175 * 15 13 11 19 19 C 1.46898 * 111.00201 * 66.04420 * 9 8 7 20 20 C 1.53000 * 109.47237 * 195.39827 * 19 9 8 21 21 C 1.47198 * 109.47410 * 173.90793 * 20 19 9 22 22 N 7.19029 * 137.86735 * 265.02419 * 2 1 3 23 23 C 1.38340 * 119.99379 * 180.02562 * 2 1 3 24 24 Cl 1.73593 * 120.00913 * 0.02562 * 23 2 1 25 25 H 1.08995 * 109.47508 * 89.99882 * 1 2 3 26 26 H 1.09008 * 109.46925 * 209.99710 * 1 2 3 27 27 H 1.08998 * 109.46762 * 329.99110 * 1 2 3 28 28 H 1.08003 * 119.98732 * 0.03383 * 3 2 1 29 29 H 1.07993 * 119.99658 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.47145 * 30.23209 * 8 7 5 31 31 H 1.08997 * 109.47382 * 150.23254 * 8 7 5 32 32 H 1.09007 * 109.46840 * 279.80892 * 10 9 8 33 33 H 1.09003 * 109.47143 * 39.80409 * 10 9 8 34 34 H 0.96998 * 120.00461 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.46878 * 315.39460 * 19 9 8 36 36 H 1.08997 * 109.47264 * 75.39306 * 19 9 8 37 37 H 1.09007 * 109.47091 * 293.90847 * 20 19 9 38 38 H 1.08997 * 109.47081 * 53.90738 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5800 1.1982 0.0005 5 6 4.2729 0.0002 -0.0044 6 17 6.0089 0.0015 -0.0112 7 6 3.5821 -1.1979 0.0003 8 6 4.3360 -2.5027 0.0007 9 7 4.5816 -2.9268 -1.3842 10 6 5.1002 -4.3005 -1.4300 11 6 4.8773 -4.8760 -2.8048 12 1 4.3659 -4.2941 -3.5574 13 6 5.3262 -6.1453 -3.1020 14 7 5.1313 -6.6477 -4.3016 15 14 6.2114 -7.1514 -1.8006 16 1 5.2214 -7.9497 -1.0340 17 1 7.1824 -8.0640 -2.4560 18 1 6.9341 -6.2402 -0.8771 19 6 5.4921 -1.9973 -2.0659 20 6 5.4266 -2.2345 -3.5759 21 6 6.2249 -1.2101 -4.2687 22 7 6.8392 -0.4184 -4.8054 23 6 2.1985 -1.1981 -0.0005 24 17 1.3306 -2.7015 -0.0019 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6577 2.1324 0.0006 29 1 4.1193 2.1338 0.0001 30 1 5.2883 -2.3720 0.5148 31 1 3.7471 -3.2626 0.5143 32 1 6.1673 -4.2936 -1.2077 33 1 4.5792 -4.9104 -0.6919 34 1 5.4468 -7.5409 -4.5105 35 1 5.1957 -0.9716 -1.8461 36 1 6.5107 -2.1640 -1.7157 37 1 5.8250 -3.2227 -3.8061 38 1 4.3904 -2.1740 -3.9086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237332705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:54 Heat of formation + Delta-G solvation = 46.947471 kcal Electronic energy + Delta-G solvation = -23190.860760 eV Core-core repulsion = 19699.390961 eV Total energy + Delta-G solvation = -3491.469799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 326.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.98373 -37.52393 -36.73697 -36.19858 -35.82515 -33.26823 -32.39915 -31.71429 -30.36511 -28.04187 -26.95914 -25.28621 -23.22309 -22.14096 -21.01928 -20.08219 -17.66432 -17.13493 -16.49570 -16.04518 -15.48571 -15.22287 -14.55005 -14.46200 -14.09094 -14.01250 -13.84591 -13.50842 -13.12620 -12.89237 -12.69598 -12.53629 -12.38466 -12.14903 -12.08521 -11.80791 -11.78136 -11.43434 -11.31675 -11.01756 -11.00178 -10.75172 -10.68652 -10.47183 -10.40664 -10.09487 -9.81957 -9.22904 -8.82289 -8.60657 -8.59602 -7.54048 -6.11530 -4.08622 0.89423 1.00423 1.89276 2.35383 3.24048 3.25791 3.32797 3.33373 3.35132 3.35925 4.35629 4.43209 4.49879 4.58967 4.72695 4.98155 5.09911 5.20846 5.23214 5.31277 5.45435 5.47151 5.55319 5.67013 5.81677 5.83096 5.97335 5.98978 6.10593 6.11670 6.20578 6.47449 6.51738 6.67913 6.83206 6.91773 7.51535 7.72880 7.84995 8.12940 8.56018 8.95789 9.49589 10.99714 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.005259 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.703995 B = 5322.745724 C = 6508.374651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.074 4.074 3 C -0.105 4.105 4 C -0.104 4.104 5 C -0.032 4.032 6 Cl -0.056 7.056 7 C -0.046 4.046 8 C 0.081 3.919 9 N -0.511 5.511 10 C 0.158 3.842 11 C -0.514 4.514 12 H 0.094 0.906 13 C 0.073 3.927 14 N -0.894 5.894 15 Si 0.867 3.133 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.267 1.267 19 C 0.068 3.932 20 C -0.040 4.040 21 C 0.223 3.777 22 N -0.476 5.476 23 C -0.009 4.009 24 Cl -0.040 7.040 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.047 0.953 31 H 0.092 0.908 32 H -0.003 1.003 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.151 0.849 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 13.586 12.288 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.075 4.075 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.060 4.060 6 Cl -0.027 7.027 7 C -0.048 4.048 8 C -0.046 4.046 9 N -0.235 5.235 10 C 0.032 3.968 11 C -0.552 4.552 12 H 0.112 0.888 13 C -0.130 4.130 14 N -0.532 5.532 15 Si 0.694 3.306 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.192 1.192 19 C -0.062 4.062 20 C -0.080 4.080 21 C -0.093 4.093 22 N -0.154 5.154 23 C -0.037 4.037 24 Cl -0.010 7.010 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.014 0.986 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.168 0.832 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.841 14.437 11.121 19.465 hybrid contribution 1.157 -1.137 1.214 2.026 sum -5.684 13.301 12.335 19.010 Atomic orbital electron populations 1.20879 0.89969 1.03427 1.03251 1.19855 0.97016 0.91306 0.99322 1.20862 0.93127 0.97422 1.00965 1.21056 0.94291 0.96805 1.00170 1.20675 0.85030 0.94153 1.06107 1.98381 1.09151 1.98688 1.96483 1.19599 0.92005 0.95082 0.98088 1.21167 0.98280 0.92494 0.92697 1.61949 1.46826 1.03650 1.11068 1.20341 0.93161 0.84173 0.99118 1.21147 1.37501 1.00290 0.96267 0.88783 1.24869 0.95671 0.97385 0.95032 1.69869 1.46578 1.16956 1.19826 0.86990 0.80233 0.80798 0.82535 1.20195 1.21297 1.19166 1.22139 0.94830 0.96624 0.92587 1.20027 0.98972 0.95611 0.93366 1.29897 0.93087 0.93374 0.92991 1.81118 1.11467 1.12084 1.10735 1.20496 0.91153 0.87802 1.04221 1.98391 1.75462 1.30741 1.96431 0.90304 0.90612 0.91155 0.84519 0.84643 0.93525 0.88981 0.98554 0.95639 0.92550 0.91324 0.94698 0.83199 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.61 36.00 0.35 -0.64 16 2 C -0.07 -0.79 5.88 -104.59 -0.62 -1.41 16 3 C -0.11 -0.99 9.70 -39.59 -0.38 -1.38 16 4 C -0.10 -1.10 9.83 -39.54 -0.39 -1.49 16 5 C -0.03 -0.41 5.22 -39.50 -0.21 -0.62 16 6 Cl -0.06 -0.73 24.27 -51.86 -1.26 -1.99 16 7 C -0.05 -0.64 4.95 -104.55 -0.52 -1.15 16 8 C 0.08 1.27 4.49 -4.98 -0.02 1.25 16 9 N -0.51 -9.26 4.47 -237.52 -1.06 -10.32 16 10 C 0.16 3.35 3.84 -4.98 -0.02 3.33 16 11 C -0.51 -12.66 7.48 -34.44 -0.26 -12.92 16 12 H 0.09 2.43 6.12 -52.48 -0.32 2.11 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 15 Si 0.87 20.02 27.51 -169.99 -4.68 15.34 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -5.93 6.48 56.52 0.37 -5.57 16 19 C 0.07 1.16 3.55 -3.82 -0.01 1.14 16 20 C -0.04 -0.71 4.39 -29.52 -0.13 -0.84 16 21 C 0.22 4.05 15.43 -20.74 -0.32 3.73 16 22 N -0.48 -9.34 18.54 42.18 0.78 -8.56 16 23 C -0.01 -0.12 6.31 -39.50 -0.25 -0.37 16 24 Cl -0.04 -0.54 25.64 -51.86 -1.33 -1.87 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.65 6.90 -51.92 -0.36 0.29 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.05 0.71 6.89 -51.92 -0.36 0.35 16 31 H 0.09 1.43 6.59 -51.93 -0.34 1.09 16 32 H 0.00 -0.07 6.68 -51.92 -0.35 -0.42 16 33 H 0.03 0.55 7.27 -51.93 -0.38 0.17 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.07 1.09 4.16 -51.93 -0.22 0.88 16 36 H 0.03 0.61 7.69 -51.93 -0.40 0.21 16 37 H 0.15 3.05 5.49 -51.92 -0.28 2.77 16 38 H 0.11 1.90 7.91 -51.93 -0.41 1.49 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -28.18 337.59 -8.83 -37.01 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.27 Total: -0.66 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.87 Total: -9.53 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.49 Total: -43.38 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.68 Total: 15.34 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.59 Total: -3.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.18 -8.83 -37.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237332705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.954 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds