Wall clock time and date at job start Tue Mar 31 2020 14:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.44455 * 123.53843 * 2 1 4 4 C 1.47030 * 123.44457 * 0.03369 * 3 2 1 5 5 O 1.21567 * 120.00247 * 359.72871 * 4 3 2 6 6 O 1.34801 * 120.00491 * 179.45684 * 4 3 2 7 7 C 1.36082 * 113.11577 * 179.76820 * 3 2 1 8 8 S 1.70416 * 110.95640 * 0.22894 * 7 3 2 9 9 C 1.33616 * 123.54701 * 180.21420 * 2 1 3 10 10 N 1.39369 * 124.74833 * 359.97277 * 9 2 1 11 11 C 1.34775 * 120.00188 * 180.25726 * 10 9 2 12 12 O 1.21414 * 119.99726 * 359.97438 * 11 10 9 13 13 C 1.49262 * 120.00218 * 180.02562 * 11 10 9 14 14 O 1.21369 * 119.99815 * 354.15900 * 13 11 10 15 15 N 1.34775 * 120.00348 * 174.16392 * 13 11 10 16 16 C 1.46504 * 119.99480 * 3.61977 * 15 13 11 17 17 C 1.46494 * 120.00179 * 183.61357 * 15 13 11 18 18 C 1.50704 * 109.46785 * 90.00235 * 17 15 13 19 19 H 1.08000 * 120.00325 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00183 * 180.02562 * 18 17 15 21 21 N 1.31512 * 119.99709 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00414 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47062 * 59.99461 * 22 20 18 24 24 H 1.48493 * 109.47216 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46837 * 299.99918 * 22 20 18 26 26 H 1.08999 * 109.46742 * 90.02748 * 1 2 3 27 27 H 1.09004 * 109.46631 * 210.02475 * 1 2 3 28 28 H 1.08998 * 109.47544 * 330.02771 * 1 2 3 29 29 H 0.96701 * 117.00440 * 179.97438 * 6 4 3 30 30 H 1.08002 * 124.51999 * 180.25374 * 7 3 2 31 31 H 0.97006 * 119.99847 * 0.25450 * 10 9 2 32 32 H 1.09001 * 109.47551 * 83.99712 * 16 15 13 33 33 H 1.09004 * 109.46508 * 203.99541 * 16 15 13 34 34 H 1.09000 * 109.47160 * 323.98823 * 16 15 13 35 35 H 1.09000 * 109.47278 * 209.99503 * 17 15 13 36 36 H 1.08995 * 109.47278 * 330.00146 * 17 15 13 37 37 H 0.97005 * 120.00588 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3052 1.2041 0.0000 4 6 1.7303 2.5573 0.0007 5 8 0.5236 2.7052 -0.0036 6 8 2.5411 3.6342 0.0117 7 6 3.6435 0.9579 0.0051 8 16 3.9551 -0.7176 0.0035 9 6 2.2455 -1.1136 -0.0042 10 7 1.7301 -2.4085 -0.0085 11 6 2.5652 -3.4662 -0.0072 12 8 3.7667 -3.2911 -0.0028 13 6 2.0132 -4.8530 -0.0124 14 8 0.8169 -5.0303 0.0893 15 7 2.8433 -5.9084 -0.1299 16 6 4.2926 -5.6990 -0.1726 17 6 2.2962 -7.2647 -0.2146 18 6 2.0506 -7.6178 -1.6590 19 1 2.2788 -6.9033 -2.4360 20 6 1.5337 -8.8528 -1.9885 21 7 1.2553 -9.7228 -1.0423 22 14 1.2299 -9.2909 -3.7788 23 1 2.5103 -9.2264 -4.5282 24 1 0.6753 -10.6657 -3.8647 25 1 0.2633 -8.3290 -4.3666 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 2.1169 4.5032 0.0114 30 1 4.4065 1.7223 0.0099 31 1 0.7701 -2.5484 -0.0123 32 1 4.6788 -5.6216 0.8437 33 1 4.7664 -6.5405 -0.6782 34 1 4.5110 -4.7793 -0.7154 35 1 3.0063 -7.9705 0.2162 36 1 1.3567 -7.3126 0.3359 37 1 0.8919 -10.5918 -1.2740 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600000075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:49 Heat of formation + Delta-G solvation = -112.467110 kcal Electronic energy + Delta-G solvation = -24700.775056 eV Core-core repulsion = 20763.727064 eV Total energy + Delta-G solvation = -3937.047992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88407 -40.41876 -38.54679 -37.75372 -36.26722 -35.60632 -34.36687 -32.66438 -30.91666 -28.35479 -27.74781 -26.28326 -25.16361 -24.51306 -22.72156 -21.46772 -20.58763 -19.06118 -18.27861 -17.98226 -17.10713 -16.74853 -16.52052 -16.24295 -16.02963 -15.74944 -15.28070 -15.20562 -14.48200 -14.36147 -13.79555 -13.60652 -13.30806 -13.27223 -12.90221 -12.55309 -12.40157 -12.19241 -12.15440 -12.14218 -11.82556 -11.43464 -11.19565 -11.11890 -10.98975 -10.83362 -10.65274 -10.48087 -10.27923 -9.78102 -9.03833 -8.61217 -8.54837 -8.25979 -7.91118 -6.16592 -4.22928 0.43751 1.06130 1.18460 1.72665 1.93011 2.34948 2.84706 2.92790 3.26225 3.30729 3.33237 3.52047 3.86933 4.34522 4.53975 4.60974 4.97237 5.03997 5.15928 5.18358 5.35350 5.59643 5.62173 5.77519 5.87148 5.99122 6.05232 6.08644 6.33406 6.42426 6.64635 6.87112 7.16453 7.25719 7.55376 7.66296 7.78113 8.02736 8.04884 8.45155 8.80872 9.42581 10.91552 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.023861 B = 0.002739 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.184632 B =10219.786268 C =10698.781035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.104 4.104 3 C -0.133 4.133 4 C 0.548 3.452 5 O -0.511 6.511 6 O -0.515 6.515 7 C -0.237 4.237 8 S 0.326 5.674 9 C 0.009 3.991 10 N -0.609 5.609 11 C 0.503 3.497 12 O -0.494 6.494 13 C 0.500 3.500 14 O -0.521 6.521 15 N -0.557 5.557 16 C 0.066 3.934 17 C 0.241 3.759 18 C -0.535 4.535 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.892 5.892 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.413 0.587 30 H 0.178 0.822 31 H 0.430 0.570 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 22.224 3.339 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.150 4.150 4 C 0.391 3.609 5 O -0.401 6.401 6 O -0.327 6.327 7 C -0.375 4.375 8 S 0.591 5.409 9 C -0.204 4.204 10 N -0.256 5.256 11 C 0.286 3.714 12 O -0.370 6.370 13 C 0.280 3.720 14 O -0.398 6.398 15 N -0.288 5.288 16 C -0.077 4.077 17 C 0.123 3.877 18 C -0.573 4.573 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.201 1.201 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.272 0.728 30 H 0.196 0.804 31 H 0.271 0.729 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.404 20.664 3.438 22.218 hybrid contribution -2.164 1.155 -1.014 2.654 sum 5.241 21.818 2.423 22.569 Atomic orbital electron populations 1.20574 0.88384 1.03697 1.03047 1.19343 0.97308 0.88338 1.06758 1.18579 0.92113 0.89975 1.14286 1.20148 0.84098 0.84685 0.72011 1.90868 1.15788 1.86889 1.46561 1.84569 1.43913 1.18056 1.86115 1.26480 0.99827 1.06269 1.04972 1.84237 0.98313 0.91625 1.66721 1.21723 0.99484 0.87528 1.11661 1.42687 1.12128 1.01268 1.69540 1.21318 0.86369 0.87439 0.76229 1.90558 1.14513 1.84713 1.47195 1.19173 0.87079 0.84291 0.81446 1.90769 1.14331 1.84942 1.49767 1.48145 1.06865 1.08058 1.65713 1.22257 0.79863 1.03761 1.01774 1.19571 0.95824 0.74207 0.98102 1.21326 1.43896 1.00272 0.91854 0.92267 1.24926 0.94941 0.96020 0.97981 1.69913 1.43390 1.07254 1.32434 0.86500 0.78685 0.77550 0.84389 1.20105 1.21046 1.20072 0.90855 0.91861 0.89054 0.72842 0.80425 0.72889 0.93024 0.90851 0.88975 0.93958 0.93199 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.25 36.01 0.33 -0.76 16 2 C -0.10 -1.26 6.04 -103.79 -0.63 -1.89 16 3 C -0.13 -1.49 5.98 -104.66 -0.63 -2.11 16 4 C 0.55 5.87 8.30 34.29 0.28 6.15 16 5 O -0.51 -6.59 15.00 -19.32 -0.29 -6.88 16 6 O -0.51 -3.81 13.08 -40.77 -0.53 -4.34 16 7 C -0.24 -2.25 10.54 29.96 0.32 -1.93 16 8 S 0.33 3.52 20.05 -107.50 -2.16 1.36 16 9 C 0.01 0.11 7.06 -15.74 -0.11 0.00 16 10 N -0.61 -8.41 5.37 -11.48 -0.06 -8.47 16 11 C 0.50 8.07 7.73 -11.67 -0.09 7.98 16 12 O -0.49 -7.66 10.59 5.44 0.06 -7.61 16 13 C 0.50 9.95 7.73 -11.67 -0.09 9.86 16 14 O -0.52 -11.74 16.04 5.48 0.09 -11.65 16 15 N -0.56 -11.56 2.86 -183.54 -0.52 -12.09 16 16 C 0.07 1.11 9.55 59.85 0.57 1.68 16 17 C 0.24 6.03 5.16 -5.19 -0.03 6.00 16 18 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 22 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.64 7.17 -51.93 -0.37 0.26 16 28 H 0.09 1.07 6.03 -51.93 -0.31 0.76 16 29 H 0.41 1.17 9.11 45.56 0.42 1.59 16 30 H 0.18 1.26 8.01 -52.49 -0.42 0.84 16 31 H 0.43 5.58 6.98 -40.82 -0.28 5.30 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 34 H 0.09 1.46 5.35 -51.94 -0.28 1.18 16 35 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 36 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -32.53 337.86 -5.96 -38.49 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -2.86 Total: 2.99 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -0.49 Total: 11.78 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.15 Total: -45.36 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.68 Total: -30.48 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.16 Total: 1.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.53 -5.96 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600000075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.981 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds