Wall clock time and date at job start Tue Mar 31 2020 14:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47081 * 2 1 4 4 C 1.35913 * 117.00066 * 180.02562 * 3 2 1 5 5 C 1.38803 * 120.00633 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.10493 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.12067 * 0.04445 * 6 5 4 8 8 Cl 1.73594 * 119.99590 * 179.97438 * 7 6 5 9 9 C 1.39037 * 120.01051 * 359.97438 * 7 6 5 10 10 N 1.39755 * 120.05583 * 180.02562 * 9 7 6 11 11 C 1.34773 * 120.00269 * 204.56824 * 10 9 7 12 12 O 1.21383 * 120.00154 * 5.52305 * 11 10 9 13 13 C 1.49349 * 120.00536 * 185.52082 * 11 10 9 14 14 O 1.21368 * 119.99662 * 0.02562 * 13 11 10 15 15 N 1.34773 * 120.00536 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00240 * 180.02562 * 15 13 11 17 17 C 1.50693 * 109.47150 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00050 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00346 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99511 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00546 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47174 * 89.99624 * 21 19 17 23 23 H 1.48494 * 109.47152 * 209.99930 * 21 19 17 24 24 H 1.48501 * 109.46664 * 329.99905 * 21 19 17 25 25 C 1.38572 * 120.00597 * 179.72331 * 4 3 2 26 26 H 1.09000 * 109.47207 * 300.00251 * 1 2 3 27 27 H 1.08997 * 109.46888 * 59.99620 * 1 2 3 28 28 H 1.08993 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46929 * 240.00152 * 2 1 3 30 30 H 1.09001 * 109.47295 * 119.99763 * 2 1 3 31 31 H 1.07998 * 119.94664 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.94371 * 180.02562 * 6 5 4 33 33 H 0.97004 * 120.00221 * 24.56229 * 10 9 7 34 34 H 0.97000 * 119.99810 * 359.97438 * 15 13 11 35 35 H 1.09001 * 109.46955 * 299.99762 * 16 15 13 36 36 H 1.09001 * 109.47113 * 59.99948 * 16 15 13 37 37 H 0.97004 * 119.99644 * 180.02562 * 20 19 17 38 38 H 1.07994 * 120.05972 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 -0.0005 5 6 4.1995 0.4248 -0.0005 6 6 5.5698 0.6035 -0.0016 7 6 6.1030 1.8788 -0.0018 8 17 7.8248 2.0996 -0.0025 9 6 5.2604 2.9848 -0.0014 10 7 5.7985 4.2747 -0.0021 11 6 5.0787 5.3054 0.4834 12 8 4.0056 5.1004 1.0124 13 6 5.6013 6.7000 0.3708 14 8 6.6741 6.9050 -0.1584 15 7 4.8817 7.7307 0.8568 16 6 5.3942 9.0987 0.7458 17 6 4.4067 10.0564 1.3610 18 1 3.4893 9.6834 1.7920 19 6 4.6743 11.4089 1.3737 20 7 5.7916 11.8630 0.8493 21 14 3.4506 12.5961 2.1369 22 1 3.7648 12.7728 3.5775 23 1 3.5375 13.9081 1.4468 24 1 2.0767 12.0512 1.9931 25 6 3.8835 2.8059 -0.0064 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7859 -0.5729 0.0003 32 1 6.2254 -0.2548 -0.0020 33 1 6.6901 4.4281 -0.3520 34 1 4.0242 7.5668 1.2795 35 1 6.3474 9.1731 1.2692 36 1 5.5362 9.3493 -0.3054 37 1 5.9800 12.8146 0.8586 38 1 3.2266 3.6630 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453750737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:35 Heat of formation + Delta-G solvation = -88.973973 kcal Electronic energy + Delta-G solvation = -24179.674298 eV Core-core repulsion = 20241.601338 eV Total energy + Delta-G solvation = -3938.072960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14281 -40.06201 -38.56314 -37.70404 -36.43935 -35.18452 -34.20806 -32.40425 -32.31239 -30.39163 -29.42324 -27.76529 -25.23719 -23.98601 -23.33490 -22.39264 -21.36336 -19.97640 -19.14992 -18.32992 -16.96189 -16.66055 -16.57681 -16.46434 -16.08886 -15.62904 -15.35247 -15.01266 -14.33826 -14.30533 -14.04870 -13.93122 -13.56443 -13.16983 -13.09191 -13.04371 -12.72924 -12.45592 -12.07966 -11.95841 -11.72573 -11.60873 -11.29836 -11.19698 -11.05150 -10.93899 -10.89781 -10.54490 -10.33637 -9.50160 -9.20698 -8.85283 -8.68894 -8.26407 -8.14074 -6.23334 -4.30839 0.74282 0.97468 1.76900 1.89857 2.41732 2.88538 3.23189 3.28984 3.29534 3.32691 3.61467 3.96374 4.30487 4.37045 4.53669 4.60614 4.63896 4.78728 4.85596 4.97379 5.05055 5.13544 5.18502 5.41444 5.46705 5.58493 5.66963 5.81867 5.86560 6.04221 6.38914 6.88767 7.04694 7.07956 7.12815 7.33997 7.51253 7.71644 7.84812 8.32708 8.51792 8.80040 9.35530 10.86707 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002755 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.476668 B =10162.654876 C =12076.033105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.308 6.308 4 C 0.160 3.840 5 C -0.221 4.221 6 C -0.046 4.046 7 C -0.108 4.108 8 Cl -0.062 7.062 9 C 0.207 3.793 10 N -0.646 5.646 11 C 0.510 3.490 12 O -0.494 6.494 13 C 0.492 3.508 14 O -0.532 6.532 15 N -0.668 5.668 16 C 0.246 3.754 17 C -0.547 4.547 18 H 0.067 0.933 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.159 4.159 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.428 0.572 34 H 0.405 0.595 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -26.874 -2.610 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.221 6.221 4 C 0.113 3.887 5 C -0.241 4.241 6 C -0.065 4.065 7 C -0.137 4.137 8 Cl -0.033 7.033 9 C 0.109 3.891 10 N -0.292 5.292 11 C 0.293 3.707 12 O -0.367 6.367 13 C 0.270 3.730 14 O -0.411 6.411 15 N -0.317 5.317 16 C 0.126 3.874 17 C -0.585 4.585 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.180 4.180 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.268 0.732 34 H 0.240 0.760 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.348 -26.366 -2.641 26.852 hybrid contribution -0.214 0.422 0.425 0.636 sum -4.562 -25.944 -2.216 26.435 Atomic orbital electron populations 1.21786 0.92540 1.02873 1.03863 1.22848 0.96125 0.81729 1.01505 1.86133 1.18482 1.29496 1.88005 1.18743 0.82685 0.93256 0.93966 1.21144 0.93299 0.98477 1.11146 1.20589 0.94665 0.94878 0.96373 1.20512 0.84719 0.93724 1.14773 1.98373 1.10338 1.97302 1.97329 1.17120 0.91288 0.83368 0.97306 1.43320 1.21012 1.04614 1.60268 1.21023 0.84809 0.87112 0.77711 1.90722 1.21038 1.85141 1.39775 1.19569 0.86123 0.85077 0.82225 1.90755 1.21381 1.84832 1.44096 1.46428 1.22455 1.08127 1.54719 1.19375 0.95743 0.73860 0.98385 1.21194 1.05414 0.91622 1.40293 0.91510 1.24939 0.95720 0.98177 0.95034 1.69967 1.23737 1.14848 1.43649 0.86357 0.81094 0.79962 0.79213 1.20366 1.20950 1.19591 1.20541 0.93028 0.97020 1.07369 0.91304 0.91360 0.90315 0.91830 0.91807 0.84558 0.84198 0.73243 0.76011 0.94607 0.94602 0.92301 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.05 0.36 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.39 10.13 -19.47 -0.20 -3.58 16 4 C 0.16 1.85 6.68 -39.25 -0.26 1.58 16 5 C -0.22 -1.99 9.04 -39.39 -0.36 -2.35 16 6 C -0.05 -0.42 9.82 -39.60 -0.39 -0.81 16 7 C -0.11 -1.23 6.34 -39.29 -0.25 -1.48 16 8 Cl -0.06 -0.68 27.77 -51.86 -1.44 -2.12 16 9 C 0.21 2.77 6.43 -83.72 -0.54 2.23 16 10 N -0.65 -9.42 5.18 -10.28 -0.05 -9.47 16 11 C 0.51 8.68 7.69 -11.63 -0.09 8.59 16 12 O -0.49 -8.80 13.64 5.47 0.07 -8.72 16 13 C 0.49 9.81 7.89 -11.63 -0.09 9.72 16 14 O -0.53 -11.75 16.48 5.48 0.09 -11.66 16 15 N -0.67 -14.25 5.54 -61.94 -0.34 -14.60 16 16 C 0.25 6.32 5.43 -5.19 -0.03 6.30 16 17 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 18 H 0.07 1.69 7.60 -52.48 -0.40 1.29 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.88 -25.45 13.29 55.43 0.74 -24.72 16 21 Si 0.91 20.68 29.54 -169.99 -5.02 15.65 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.16 -2.17 8.65 -39.23 -0.34 -2.51 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.14 0.83 6.29 -52.49 -0.33 0.50 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.43 5.93 7.23 -40.82 -0.29 5.63 16 34 H 0.40 7.96 7.79 -40.82 -0.32 7.65 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.16 2.52 5.78 -52.49 -0.30 2.21 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -30.64 348.40 -7.19 -37.83 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.11 Total: 8.03 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -2.17 Total: 8.11 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.34 Total: -48.79 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.03 Total: -23.96 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.44 Total: -2.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.64 -7.19 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453750737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.143 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds