Wall clock time and date at job start Tue Mar 31 2020 14:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47081 * 2 1 4 4 C 1.35913 * 117.00066 * 180.02562 * 3 2 1 5 5 C 1.38803 * 120.00633 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.10493 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.12067 * 0.04445 * 6 5 4 8 8 Cl 1.73594 * 119.99590 * 179.97438 * 7 6 5 9 9 C 1.39037 * 120.01051 * 359.97438 * 7 6 5 10 10 N 1.39755 * 120.05583 * 180.02562 * 9 7 6 11 11 C 1.34773 * 120.00269 * 204.56824 * 10 9 7 12 12 O 1.21383 * 120.00154 * 5.52305 * 11 10 9 13 13 C 1.49349 * 120.00536 * 185.52082 * 11 10 9 14 14 O 1.21368 * 119.99662 * 0.02562 * 13 11 10 15 15 N 1.34773 * 120.00536 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00240 * 180.02562 * 15 13 11 17 17 C 1.50693 * 109.47150 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00050 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00346 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99511 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00546 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47174 * 89.99624 * 21 19 17 23 23 H 1.48494 * 109.47152 * 209.99930 * 21 19 17 24 24 H 1.48501 * 109.46664 * 329.99905 * 21 19 17 25 25 C 1.38572 * 120.00597 * 179.72331 * 4 3 2 26 26 H 1.09000 * 109.47207 * 300.00251 * 1 2 3 27 27 H 1.08997 * 109.46888 * 59.99620 * 1 2 3 28 28 H 1.08993 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46929 * 240.00152 * 2 1 3 30 30 H 1.09001 * 109.47295 * 119.99763 * 2 1 3 31 31 H 1.07998 * 119.94664 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.94371 * 180.02562 * 6 5 4 33 33 H 0.97004 * 120.00221 * 24.56229 * 10 9 7 34 34 H 0.97000 * 119.99810 * 359.97438 * 15 13 11 35 35 H 1.09001 * 109.46955 * 299.99762 * 16 15 13 36 36 H 1.09001 * 109.47113 * 59.99948 * 16 15 13 37 37 H 0.97004 * 119.99644 * 180.02562 * 20 19 17 38 38 H 1.07994 * 120.05972 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 -0.0005 5 6 4.1995 0.4248 -0.0005 6 6 5.5698 0.6035 -0.0016 7 6 6.1030 1.8788 -0.0018 8 17 7.8248 2.0996 -0.0025 9 6 5.2604 2.9848 -0.0014 10 7 5.7985 4.2747 -0.0021 11 6 5.0787 5.3054 0.4834 12 8 4.0056 5.1004 1.0124 13 6 5.6013 6.7000 0.3708 14 8 6.6741 6.9050 -0.1584 15 7 4.8817 7.7307 0.8568 16 6 5.3942 9.0987 0.7458 17 6 4.4067 10.0564 1.3610 18 1 3.4893 9.6834 1.7920 19 6 4.6743 11.4089 1.3737 20 7 5.7916 11.8630 0.8493 21 14 3.4506 12.5961 2.1369 22 1 3.7648 12.7728 3.5775 23 1 3.5375 13.9081 1.4468 24 1 2.0767 12.0512 1.9931 25 6 3.8835 2.8059 -0.0064 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7859 -0.5729 0.0003 32 1 6.2254 -0.2548 -0.0020 33 1 6.6901 4.4281 -0.3520 34 1 4.0242 7.5668 1.2795 35 1 6.3474 9.1731 1.2692 36 1 5.5362 9.3493 -0.3054 37 1 5.9800 12.8146 0.8586 38 1 3.2266 3.6630 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453750737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:34 Heat of formation + Delta-G solvation = -110.352482 kcal Electronic energy + Delta-G solvation = -24180.601340 eV Core-core repulsion = 20241.601338 eV Total energy + Delta-G solvation = -3939.000001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.35671 -41.10994 -39.93633 -38.80798 -37.32758 -36.65064 -35.77503 -34.39128 -32.89826 -31.31675 -30.30692 -29.69760 -26.66220 -25.04950 -24.30771 -23.81050 -22.42192 -21.46459 -20.41883 -19.50542 -18.39050 -17.93992 -17.66879 -17.38424 -17.12660 -17.02245 -16.94754 -16.52102 -15.91711 -15.60698 -15.06007 -14.87981 -14.80554 -14.56903 -14.09529 -13.95752 -13.77206 -13.68183 -13.41920 -13.19327 -13.00753 -12.74204 -12.68894 -12.52446 -12.24250 -12.19089 -12.01231 -11.81298 -11.54261 -11.33472 -10.85979 -10.76085 -10.10226 -9.66100 -9.13624 -8.32302 -6.48542 -0.32177 0.12380 0.44881 0.97837 1.14679 1.44268 1.45387 1.57240 1.96301 2.09941 2.35608 2.50955 2.61875 3.03205 3.33686 3.60419 3.87371 3.94591 4.10199 4.10981 4.23583 4.39640 4.41375 4.69285 4.84166 4.94496 4.96951 4.98196 5.01093 5.14220 5.15426 5.20771 5.28781 5.44725 5.48924 5.74103 5.78700 6.30469 6.35493 6.53283 6.62920 6.93594 7.24240 8.79367 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.002755 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.476668 B =10162.654876 C =12076.033105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.042 3.958 3 O -0.331 6.331 4 C 0.155 3.845 5 C -0.202 4.202 6 C -0.036 4.036 7 C -0.111 4.111 8 Cl -0.060 7.060 9 C 0.182 3.818 10 N -0.634 5.634 11 C 0.522 3.478 12 O -0.503 6.503 13 C 0.495 3.505 14 O -0.554 6.554 15 N -0.669 5.669 16 C 0.263 3.737 17 C -0.562 4.562 18 H 0.080 0.920 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.983 3.017 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.181 4.181 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.430 0.570 34 H 0.414 0.586 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.271 0.729 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 -29.677 -2.111 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.108 3.892 5 C -0.221 4.221 6 C -0.054 4.054 7 C -0.140 4.140 8 Cl -0.031 7.031 9 C 0.086 3.914 10 N -0.281 5.281 11 C 0.304 3.696 12 O -0.377 6.377 13 C 0.274 3.726 14 O -0.434 6.434 15 N -0.319 5.319 16 C 0.141 3.859 17 C -0.600 4.600 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.806 3.194 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.183 1.183 25 C -0.202 4.202 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.192 0.808 32 H 0.192 0.808 33 H 0.270 0.730 34 H 0.251 0.749 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.080 0.920 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.525 -29.239 -2.148 29.834 hybrid contribution 0.150 1.100 0.215 1.131 sum -5.375 -28.139 -1.933 28.713 Atomic orbital electron populations 1.21836 0.91974 1.04288 1.02940 1.23216 0.96695 0.80102 1.03208 1.86125 1.18229 1.32281 1.87851 1.18825 0.83466 0.93110 0.93793 1.21536 0.92847 0.99288 1.08424 1.21023 0.95254 0.94807 0.94364 1.20665 0.84683 0.93978 1.14696 1.98377 1.10062 1.97365 1.97313 1.17237 0.91667 0.82887 0.99586 1.43131 1.20669 1.04846 1.59437 1.20181 0.84814 0.86137 0.78466 1.90733 1.21336 1.84986 1.40658 1.20052 0.85438 0.86237 0.80844 1.90733 1.22386 1.85601 1.44703 1.46151 1.23054 1.07098 1.55617 1.18868 0.94779 0.76161 0.96077 1.21558 1.05924 0.92185 1.40328 0.90177 1.25963 0.97610 1.00143 0.95275 1.70102 1.25811 1.15476 1.44917 0.85183 0.78769 0.77197 0.78276 1.19578 1.20630 1.18318 1.20429 0.92964 0.97585 1.09231 0.92364 0.92183 0.87689 0.89866 0.90128 0.80816 0.80783 0.72977 0.74936 0.97539 0.97537 0.92021 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.04 0.45 5.46 71.98 0.39 0.85 16 3 O -0.33 -6.85 10.13 -92.58 -0.94 -7.79 16 4 C 0.16 3.33 6.68 22.48 0.15 3.48 16 5 C -0.20 -2.90 9.04 22.39 0.20 -2.70 16 6 C -0.04 -0.53 9.82 22.26 0.22 -0.31 16 7 C -0.11 -2.34 6.34 22.46 0.14 -2.19 16 8 Cl -0.06 -1.22 27.77 -2.72 -0.08 -1.29 16 9 C 0.18 4.83 6.43 38.22 0.25 5.08 16 10 N -0.63 -18.84 5.18 -304.79 -1.58 -20.42 16 11 C 0.52 18.28 7.69 87.24 0.67 18.95 16 12 O -0.50 -18.42 13.64 -3.35 -0.05 -18.47 16 13 C 0.49 20.51 7.89 87.24 0.69 21.20 16 14 O -0.55 -25.52 16.48 -3.30 -0.05 -25.57 16 15 N -0.67 -29.65 5.54 -468.24 -2.59 -32.25 16 16 C 0.26 14.12 5.43 85.63 0.46 14.59 16 17 C -0.56 -30.58 9.28 25.60 0.24 -30.34 16 18 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 19 C 0.01 0.58 5.46 84.65 0.46 1.04 16 20 N -0.92 -54.46 13.29 21.45 0.28 -54.18 16 21 Si 0.98 42.33 29.54 68.60 2.03 44.36 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 C -0.18 -4.96 8.65 22.50 0.19 -4.77 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.58 7.66 -2.39 -0.02 0.56 16 30 H 0.08 0.61 7.66 -2.39 -0.02 0.59 16 31 H 0.17 1.18 6.29 -2.91 -0.02 1.16 16 32 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.43 12.14 7.23 -92.71 -0.67 11.47 16 34 H 0.41 16.72 7.79 -92.71 -0.72 16.00 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 38 H 0.14 4.47 5.78 -2.91 -0.02 4.45 16 Total: -1.00 -68.49 348.40 1.58 -66.91 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.26 Total: 24.51 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 4.81 Total: 24.19 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -3.89 Total: -106.84 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -1.04 Total: -51.83 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -68.49 1.58 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453750737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.441 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds