Wall clock time and date at job start Tue Mar 31 2020 15:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47321 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47071 * 120.00509 * 3 2 1 6 6 H 1.48501 * 109.47078 * 240.00359 * 3 2 1 7 7 C 1.37875 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00444 * 183.99372 * 7 2 1 9 9 C 1.50705 * 120.00321 * 3.99313 * 7 2 1 10 10 H 1.09006 * 109.46867 * 333.36691 * 9 7 2 11 11 C 1.50700 * 109.47314 * 213.36856 * 9 7 2 12 12 O 1.20833 * 119.99376 * 240.00136 * 11 9 7 13 13 O 1.34259 * 120.00231 * 59.99654 * 11 9 7 14 14 C 1.35931 * 116.99851 * 185.57306 * 13 11 9 15 15 C 1.38864 * 119.98118 * 255.75964 * 14 13 11 16 16 C 1.38254 * 120.24929 * 179.76637 * 15 14 13 17 17 C 1.37994 * 120.21017 * 0.51064 * 16 15 14 18 18 C 1.39618 * 119.96112 * 359.75016 * 17 16 15 19 19 C 1.47734 * 120.12403 * 180.02562 * 18 17 16 20 20 O 1.21476 * 120.00070 * 179.97438 * 19 18 17 21 21 O 1.34711 * 120.00266 * 359.97438 * 19 18 17 22 22 C 1.38436 * 119.98677 * 76.04018 * 14 13 11 23 23 C 1.50701 * 109.47170 * 93.36176 * 9 7 2 24 24 C 1.38235 * 119.99909 * 53.66616 * 23 9 7 25 25 C 1.38231 * 119.99868 * 179.78528 * 24 23 9 26 26 C 1.38232 * 120.00148 * 0.44373 * 25 24 23 27 27 C 1.38235 * 119.99821 * 359.80943 * 26 25 24 28 28 C 1.38234 * 120.00295 * 359.97438 * 27 26 25 29 29 H 0.97004 * 119.99894 * 174.21227 * 1 2 3 30 30 H 1.07997 * 119.87591 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.89335 * 180.23943 * 16 15 14 32 32 H 1.08000 * 120.02045 * 179.76697 * 17 16 15 33 33 H 0.96698 * 117.00677 * 179.97438 * 21 19 18 34 34 H 1.08005 * 120.10486 * 359.95103 * 22 14 13 35 35 H 1.08000 * 119.99911 * 359.97438 * 24 23 9 36 36 H 1.08005 * 119.99970 * 180.27356 * 25 24 23 37 37 H 1.08001 * 120.00377 * 179.83119 * 26 25 24 38 38 H 1.08004 * 119.99800 * 180.02562 * 27 26 25 39 39 H 1.07996 * 120.00486 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1028 1.6964 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0825 -1.1953 0.0646 9 6 1.2537 -2.4976 -0.0920 10 1 0.2503 -2.3682 0.3137 11 6 1.9827 -3.5537 0.6981 12 8 2.3858 -4.5502 0.1463 13 8 2.1844 -3.3872 2.0150 14 6 2.9481 -4.3187 2.6449 15 6 2.3484 -5.2798 3.4482 16 6 3.1194 -6.2327 4.0876 17 6 4.4914 -6.2289 3.9403 18 6 5.1040 -5.2634 3.1391 19 6 6.5726 -5.2563 2.9784 20 8 7.1032 -4.4155 2.2805 21 8 7.3233 -6.1822 3.6059 22 6 4.3237 -4.3054 2.4901 23 6 1.1611 -2.9238 -1.5345 24 6 2.3073 -3.0234 -2.3008 25 6 2.2228 -3.4186 -3.6227 26 6 0.9912 -3.7054 -4.1810 27 6 -0.1555 -3.6008 -3.4162 28 6 -0.0706 -3.2098 -2.0930 29 1 -0.4850 -0.8358 -0.0847 30 1 1.2754 -5.2853 3.5705 31 1 2.6467 -6.9799 4.7079 32 1 5.0911 -6.9725 4.4442 33 1 8.2797 -6.1376 3.4702 34 1 4.7916 -3.5561 1.8686 35 1 3.2692 -2.7953 -1.8657 36 1 3.1188 -3.5007 -4.2201 37 1 0.9249 -4.0116 -5.2145 38 1 -1.1178 -3.8252 -3.8522 39 1 -0.9666 -3.1277 -1.4956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:58 Heat of formation + Delta-G solvation = -117.825531 kcal Electronic energy + Delta-G solvation = -26694.206184 eV Core-core repulsion = 22725.022226 eV Total energy + Delta-G solvation = -3969.183959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99715 -40.24166 -38.80651 -37.99215 -36.23835 -36.13880 -34.19067 -31.48294 -31.13677 -30.36105 -30.19607 -27.55746 -24.95676 -24.20526 -23.24227 -21.82813 -21.66508 -21.13809 -20.05290 -18.37968 -17.85950 -17.51211 -16.49719 -16.31987 -16.14738 -15.99879 -15.75676 -15.62084 -14.62050 -14.31481 -14.10149 -13.85684 -13.80219 -13.50536 -13.17226 -12.82347 -12.67421 -12.54839 -12.33962 -12.03859 -11.76501 -11.72758 -11.67181 -11.11882 -10.91590 -10.87940 -10.51964 -10.47856 -10.35173 -10.21327 -9.64399 -9.21824 -9.14483 -8.79674 -8.63561 -8.19859 -7.89233 -6.66630 -4.42076 0.53210 1.10835 2.07685 2.13964 2.37881 2.74689 2.93434 3.31092 3.36082 3.37570 3.55237 3.79852 4.34376 4.56701 4.65898 4.82430 4.91404 5.03508 5.07436 5.30757 5.32463 5.52306 5.55978 5.66584 5.69604 5.89593 5.99977 6.08178 6.14585 6.21307 6.22543 6.27051 6.31907 6.42472 6.55586 6.71599 6.79054 7.06178 7.12852 7.18175 7.38066 7.61378 7.72848 7.76303 8.07285 8.46866 8.58143 9.27673 10.72160 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.004086 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.096894 B = 6851.767173 C = 7680.436740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.037 3.963 3 Si 1.070 2.930 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.590 4.590 8 H 0.061 0.939 9 C 0.071 3.929 10 H 0.086 0.914 11 C 0.478 3.522 12 O -0.514 6.514 13 O -0.282 6.282 14 C 0.091 3.909 15 C -0.087 4.087 16 C -0.120 4.120 17 C -0.070 4.070 18 C -0.117 4.117 19 C 0.529 3.471 20 O -0.507 6.507 21 O -0.513 6.513 22 C -0.060 4.060 23 C -0.032 4.032 24 C -0.080 4.080 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.271 0.729 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.414 0.586 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -11.446 5.523 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.170 4.170 3 Si 0.897 3.103 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.627 4.627 8 H 0.079 0.921 9 C 0.052 3.948 10 H 0.103 0.897 11 C 0.324 3.676 12 O -0.400 6.400 13 O -0.197 6.197 14 C 0.049 3.951 15 C -0.106 4.106 16 C -0.138 4.138 17 C -0.088 4.088 18 C -0.118 4.118 19 C 0.373 3.627 20 O -0.396 6.396 21 O -0.325 6.325 22 C -0.079 4.079 23 C -0.033 4.033 24 C -0.098 4.098 25 C -0.148 4.148 26 C -0.159 4.159 27 C -0.145 4.145 28 C -0.141 4.141 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.272 0.728 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.324 -9.906 5.301 12.433 hybrid contribution 0.922 -1.649 -0.238 1.904 sum 6.246 -11.555 5.063 14.077 Atomic orbital electron populations 1.70843 1.06813 1.31102 1.43627 1.25937 0.96284 1.02707 0.92064 0.83511 0.75044 0.74704 0.77065 1.20378 1.20922 1.20945 1.21497 0.94660 0.88959 1.57560 0.92070 1.17941 0.98439 0.91580 0.86862 0.89678 1.25429 0.76878 0.86598 0.78717 1.90606 1.49569 1.30403 1.69449 1.84830 1.63098 1.46916 1.24869 1.18498 0.89268 0.91176 0.96127 1.21536 1.01277 0.91834 0.95936 1.20991 0.93311 0.98943 1.00566 1.21433 0.95046 0.96710 0.95645 1.18766 0.89042 0.99961 1.04037 1.20820 0.88143 0.77805 0.75949 1.90925 1.74093 1.37391 1.37196 1.84535 1.25312 1.53876 1.68757 1.21486 0.92727 0.96975 0.96704 1.20014 0.92811 0.93923 0.96528 1.20847 0.98478 0.97240 0.93246 1.21006 0.97137 1.01160 0.95492 1.20889 0.92964 1.02905 0.99103 1.20916 0.97768 1.01471 0.94368 1.20977 0.97166 1.00522 0.95478 0.91692 0.84425 0.84372 0.84149 0.72762 0.83816 0.86811 0.87084 0.87208 0.87041 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 13.62 55.43 0.76 -23.78 16 2 C 0.04 0.98 5.46 -17.82 -0.10 0.89 16 3 Si 1.07 23.83 29.91 -169.99 -5.08 18.75 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.59 -15.28 7.59 -34.44 -0.26 -15.54 16 8 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 9 C 0.07 1.70 2.34 -94.07 -0.22 1.48 16 10 H 0.09 2.07 6.03 -51.93 -0.31 1.76 16 11 C 0.48 10.87 6.98 36.01 0.25 11.13 16 12 O -0.51 -12.10 15.06 -18.75 -0.28 -12.39 16 13 O -0.28 -5.98 9.94 -23.63 -0.23 -6.22 16 14 C 0.09 1.64 5.07 -39.28 -0.20 1.44 16 15 C -0.09 -1.24 9.98 -39.34 -0.39 -1.63 16 16 C -0.12 -1.34 10.03 -39.66 -0.40 -1.73 16 17 C -0.07 -0.81 9.61 -39.16 -0.38 -1.18 16 18 C -0.12 -1.69 5.87 -105.00 -0.62 -2.31 16 19 C 0.53 7.27 8.27 34.61 0.29 7.56 16 20 O -0.51 -8.66 17.13 -19.25 -0.33 -8.99 16 21 O -0.51 -4.80 12.68 -40.52 -0.51 -5.32 16 22 C -0.06 -1.05 9.25 -39.01 -0.36 -1.41 16 23 C -0.03 -0.73 4.30 -104.62 -0.45 -1.18 16 24 C -0.08 -1.75 8.33 -39.59 -0.33 -2.08 16 25 C -0.13 -2.45 10.05 -39.59 -0.40 -2.85 16 26 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 27 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 28 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 29 H 0.27 7.31 6.50 -40.82 -0.27 7.05 16 30 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.14 1.22 7.61 -52.49 -0.40 0.82 16 33 H 0.41 1.96 9.11 45.56 0.42 2.38 16 34 H 0.14 2.73 7.65 -52.48 -0.40 2.33 16 35 H 0.11 2.55 7.88 -52.49 -0.41 2.14 16 36 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 39 H 0.11 2.16 7.96 -52.49 -0.42 1.74 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -32.42 353.38 -8.22 -40.64 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.12 Total: 7.87 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -4.74 Total: -15.89 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.76 Total: -23.78 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.36 Total: -32.91 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.08 Total: 18.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.42 -8.22 -40.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.188 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds