Wall clock time and date at job start Tue Mar 31 2020 15:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47321 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47071 * 120.00509 * 3 2 1 6 6 H 1.48501 * 109.47078 * 240.00359 * 3 2 1 7 7 C 1.37875 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00444 * 183.99372 * 7 2 1 9 9 C 1.50705 * 120.00321 * 3.99313 * 7 2 1 10 10 H 1.09006 * 109.46867 * 333.36691 * 9 7 2 11 11 C 1.50700 * 109.47314 * 213.36856 * 9 7 2 12 12 O 1.20833 * 119.99376 * 240.00136 * 11 9 7 13 13 O 1.34259 * 120.00231 * 59.99654 * 11 9 7 14 14 C 1.35931 * 116.99851 * 185.57306 * 13 11 9 15 15 C 1.38864 * 119.98118 * 255.75964 * 14 13 11 16 16 C 1.38254 * 120.24929 * 179.76637 * 15 14 13 17 17 C 1.37994 * 120.21017 * 0.51064 * 16 15 14 18 18 C 1.39618 * 119.96112 * 359.75016 * 17 16 15 19 19 C 1.47734 * 120.12403 * 180.02562 * 18 17 16 20 20 O 1.21476 * 120.00070 * 179.97438 * 19 18 17 21 21 O 1.34711 * 120.00266 * 359.97438 * 19 18 17 22 22 C 1.38436 * 119.98677 * 76.04018 * 14 13 11 23 23 C 1.50701 * 109.47170 * 93.36176 * 9 7 2 24 24 C 1.38235 * 119.99909 * 53.66616 * 23 9 7 25 25 C 1.38231 * 119.99868 * 179.78528 * 24 23 9 26 26 C 1.38232 * 120.00148 * 0.44373 * 25 24 23 27 27 C 1.38235 * 119.99821 * 359.80943 * 26 25 24 28 28 C 1.38234 * 120.00295 * 359.97438 * 27 26 25 29 29 H 0.97004 * 119.99894 * 174.21227 * 1 2 3 30 30 H 1.07997 * 119.87591 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.89335 * 180.23943 * 16 15 14 32 32 H 1.08000 * 120.02045 * 179.76697 * 17 16 15 33 33 H 0.96698 * 117.00677 * 179.97438 * 21 19 18 34 34 H 1.08005 * 120.10486 * 359.95103 * 22 14 13 35 35 H 1.08000 * 119.99911 * 359.97438 * 24 23 9 36 36 H 1.08005 * 119.99970 * 180.27356 * 25 24 23 37 37 H 1.08001 * 120.00377 * 179.83119 * 26 25 24 38 38 H 1.08004 * 119.99800 * 180.02562 * 27 26 25 39 39 H 1.07996 * 120.00486 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1028 1.6964 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0825 -1.1953 0.0646 9 6 1.2537 -2.4976 -0.0920 10 1 0.2503 -2.3682 0.3137 11 6 1.9827 -3.5537 0.6981 12 8 2.3858 -4.5502 0.1463 13 8 2.1844 -3.3872 2.0150 14 6 2.9481 -4.3187 2.6449 15 6 2.3484 -5.2798 3.4482 16 6 3.1194 -6.2327 4.0876 17 6 4.4914 -6.2289 3.9403 18 6 5.1040 -5.2634 3.1391 19 6 6.5726 -5.2563 2.9784 20 8 7.1032 -4.4155 2.2805 21 8 7.3233 -6.1822 3.6059 22 6 4.3237 -4.3054 2.4901 23 6 1.1611 -2.9238 -1.5345 24 6 2.3073 -3.0234 -2.3008 25 6 2.2228 -3.4186 -3.6227 26 6 0.9912 -3.7054 -4.1810 27 6 -0.1555 -3.6008 -3.4162 28 6 -0.0706 -3.2098 -2.0930 29 1 -0.4850 -0.8358 -0.0847 30 1 1.2754 -5.2853 3.5705 31 1 2.6467 -6.9799 4.7079 32 1 5.0911 -6.9725 4.4442 33 1 8.2797 -6.1376 3.4702 34 1 4.7916 -3.5561 1.8686 35 1 3.2692 -2.7953 -1.8657 36 1 3.1188 -3.5007 -4.2201 37 1 0.9249 -4.0116 -5.2145 38 1 -1.1178 -3.8252 -3.8522 39 1 -0.9666 -3.1277 -1.4956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:58 Heat of formation + Delta-G solvation = -135.925453 kcal Electronic energy + Delta-G solvation = -26694.991056 eV Core-core repulsion = 22725.022226 eV Total energy + Delta-G solvation = -3969.968830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.49572 -41.42341 -40.27557 -39.32455 -37.74308 -37.22095 -36.08516 -32.92718 -32.59102 -31.73043 -31.58666 -29.25721 -26.11560 -26.05284 -24.72326 -23.37302 -22.91477 -22.36520 -21.65114 -19.84970 -19.27582 -18.94540 -18.05955 -17.76855 -17.54960 -17.24824 -17.07126 -16.80842 -16.20063 -15.82655 -15.68029 -15.45120 -15.11775 -14.80644 -14.52742 -14.49665 -14.16622 -14.07844 -13.73087 -13.37117 -13.18896 -13.00784 -12.88682 -12.71498 -12.67074 -12.25186 -12.07619 -11.97483 -11.90795 -11.77063 -11.43404 -11.04928 -10.67105 -10.33133 -10.00634 -9.74209 -9.49477 -8.76783 -6.51168 -0.58148 -0.09386 0.54162 0.59061 1.08655 1.29706 1.52061 1.57428 1.74831 1.77778 1.98499 2.48198 2.58896 2.97701 3.10489 3.61700 3.72212 3.78905 3.95267 4.01122 4.06535 4.10475 4.23507 4.24486 4.30479 4.47692 4.59806 4.65265 4.73462 4.80560 4.99757 5.08890 5.10714 5.14875 5.21613 5.29318 5.43669 5.51713 5.61545 5.63090 5.67692 5.89026 5.98285 6.20682 6.41874 6.82646 6.84288 7.23986 8.63461 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.004086 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.096894 B = 6851.767173 C = 7680.436740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.003 4.003 3 Si 1.108 2.892 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.595 4.595 8 H 0.044 0.956 9 C 0.069 3.931 10 H 0.071 0.929 11 C 0.479 3.521 12 O -0.527 6.527 13 O -0.295 6.295 14 C 0.045 3.955 15 C -0.088 4.088 16 C -0.099 4.099 17 C -0.046 4.046 18 C -0.129 4.129 19 C 0.537 3.463 20 O -0.552 6.552 21 O -0.490 6.490 22 C -0.087 4.087 23 C -0.059 4.059 24 C -0.109 4.109 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.142 4.142 29 H 0.264 0.736 30 H 0.153 0.847 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.437 0.563 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -14.102 5.806 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.204 4.204 3 Si 0.929 3.071 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.632 4.632 8 H 0.062 0.938 9 C 0.049 3.951 10 H 0.089 0.911 11 C 0.326 3.674 12 O -0.416 6.416 13 O -0.210 6.210 14 C 0.004 3.996 15 C -0.106 4.106 16 C -0.117 4.117 17 C -0.064 4.064 18 C -0.130 4.130 19 C 0.382 3.618 20 O -0.445 6.445 21 O -0.304 6.304 22 C -0.106 4.106 23 C -0.060 4.060 24 C -0.127 4.127 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.160 4.160 29 H 0.075 0.925 30 H 0.171 0.829 31 H 0.208 0.792 32 H 0.201 0.799 33 H 0.299 0.701 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.540 -12.599 5.615 14.864 hybrid contribution 0.944 -1.046 -0.241 1.429 sum 6.483 -13.645 5.373 16.034 Atomic orbital electron populations 1.70917 1.07368 1.30757 1.45742 1.27082 0.96457 1.05469 0.91438 0.83048 0.74437 0.71778 0.77856 1.19915 1.19843 1.19835 1.21590 0.93938 0.90414 1.57274 0.93805 1.17882 0.97395 0.91359 0.88429 0.91120 1.25125 0.76555 0.86138 0.79559 1.90551 1.50116 1.30847 1.70040 1.84771 1.63602 1.48646 1.24028 1.18937 0.89378 0.92983 0.98292 1.21854 1.02558 0.91219 0.94994 1.21581 0.92954 0.98094 0.99048 1.21956 0.95663 0.95476 0.93256 1.18934 0.89570 1.00020 1.04494 1.20716 0.88160 0.77615 0.75265 1.90915 1.74827 1.39392 1.39331 1.84462 1.27070 1.51674 1.67198 1.21316 0.93117 0.97989 0.98168 1.19978 0.94212 0.96100 0.95675 1.20844 0.97306 0.99526 0.95059 1.21360 0.99313 0.99911 0.94257 1.21399 0.91759 1.00789 1.00955 1.21372 0.99928 0.99547 0.93085 1.21191 0.96396 1.01306 0.97142 0.92452 0.82899 0.79168 0.79917 0.70077 0.87429 0.89169 0.84312 0.82751 0.83245 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.44 13.62 21.45 0.29 -52.14 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 1.11 49.62 29.91 68.60 2.05 51.68 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.60 -33.02 7.59 25.60 0.19 -32.82 16 8 H 0.04 2.51 7.82 -2.91 -0.02 2.48 16 9 C 0.07 3.53 2.34 -13.03 -0.03 3.50 16 10 H 0.07 3.75 6.03 -2.38 -0.01 3.73 16 11 C 0.48 23.60 6.98 71.24 0.50 24.10 16 12 O -0.53 -26.55 15.06 21.94 0.33 -26.22 16 13 O -0.30 -13.59 9.94 4.51 0.04 -13.55 16 14 C 0.05 1.71 5.07 22.47 0.11 1.82 16 15 C -0.09 -2.40 9.98 22.42 0.22 -2.18 16 16 C -0.10 -1.82 10.03 22.22 0.22 -1.59 16 17 C -0.05 -0.89 9.61 22.55 0.22 -0.67 16 18 C -0.13 -3.68 5.87 -20.11 -0.12 -3.79 16 19 C 0.54 14.49 8.27 70.33 0.58 15.07 16 20 O -0.55 -19.64 17.13 19.92 0.34 -19.30 16 21 O -0.49 -7.75 12.68 -56.21 -0.71 -8.47 16 22 C -0.09 -3.26 9.25 22.64 0.21 -3.05 16 23 C -0.06 -2.82 4.30 -19.87 -0.09 -2.90 16 24 C -0.11 -4.99 8.33 22.27 0.19 -4.81 16 25 C -0.13 -4.82 10.05 22.27 0.22 -4.60 16 26 C -0.13 -4.22 10.05 22.27 0.22 -3.99 16 27 C -0.12 -4.14 10.05 22.27 0.22 -3.92 16 28 C -0.14 -5.94 9.67 22.27 0.22 -5.72 16 29 H 0.26 15.06 6.50 -92.70 -0.60 14.45 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.18 2.05 7.61 -2.91 -0.02 2.03 16 33 H 0.44 2.88 9.11 -74.06 -0.67 2.20 16 34 H 0.11 4.67 7.65 -2.91 -0.02 4.65 16 35 H 0.09 4.41 7.88 -2.91 -0.02 4.38 16 36 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.12 4.61 7.96 -2.91 -0.02 4.59 16 Total: -1.00 -77.61 353.38 6.51 -71.11 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.60 Total: 22.12 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 3.56 Total: -25.23 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.29 Total: -52.14 kcal Atomic # 8 Polarization: -67.54 SS G_CDS: 0.00 Total: -67.53 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.68 kcal Total: -77.61 6.51 -71.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.819 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds