Wall clock time and date at job start Tue Mar 31 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48502 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47185 * 299.99633 * 3 2 1 6 6 H 1.48502 * 109.47332 * 60.00154 * 3 2 1 7 7 C 1.38893 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 163.62530 * 7 2 1 9 9 N 1.37135 * 119.99961 * 343.61809 * 7 2 1 10 10 C 1.34777 * 120.00226 * 164.73831 * 9 7 2 11 11 O 1.21273 * 120.00186 * 174.95486 * 10 9 7 12 12 C 1.50703 * 119.99448 * 354.96226 * 10 9 7 13 13 O 1.45205 * 109.46811 * 179.97438 * 12 10 9 14 14 C 1.34672 * 117.00241 * 180.02562 * 13 12 10 15 15 O 1.21426 * 119.99436 * 359.97438 * 14 13 12 16 16 C 1.48036 * 120.00409 * 180.02562 * 14 13 12 17 17 C 1.39868 * 120.92726 * 359.71797 * 16 14 13 18 18 C 1.38149 * 118.99600 * 179.75061 * 17 16 14 19 19 N 1.31814 * 120.90152 * 0.53887 * 18 17 16 20 20 C 1.31807 * 122.05654 * 359.70827 * 19 18 17 21 21 C 1.38144 * 120.90825 * 0.02854 * 20 19 18 22 22 C 1.39789 * 119.99953 * 344.74609 * 9 7 2 23 23 C 1.38962 * 120.07833 * 281.19962 * 22 9 7 24 24 C 1.38077 * 119.92035 * 179.79205 * 23 22 9 25 25 C 1.38309 * 120.08329 * 0.46568 * 24 23 22 26 26 C 1.38303 * 120.14994 * 359.79075 * 25 24 23 27 27 C 1.38084 * 120.08033 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99905 * 5.01754 * 1 2 3 29 29 H 1.08998 * 109.47320 * 59.99702 * 12 10 9 30 30 H 1.08996 * 109.47016 * 299.99249 * 12 10 9 31 31 H 1.08002 * 120.49843 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.55005 * 180.24922 * 18 17 16 33 33 H 1.08006 * 119.54527 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.50618 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.03460 * 0.02562 * 23 22 9 36 36 H 1.08004 * 119.95996 * 180.25309 * 24 23 22 37 37 H 1.07995 * 119.92488 * 179.76768 * 25 24 23 38 38 H 1.08001 * 119.95931 * 179.97438 * 26 25 24 39 39 H 1.08004 * 120.03559 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3965 1.2125 7 6 2.0087 -1.2028 0.0005 8 1 3.0558 -1.2219 -0.2631 9 7 1.3647 -2.3662 0.3360 10 6 1.9286 -3.5559 0.0476 11 8 1.4047 -4.5826 0.4247 12 6 3.2102 -3.6102 -0.7434 13 8 3.6114 -4.9945 -0.9203 14 6 4.7458 -5.2189 -1.6107 15 8 5.3821 -4.2841 -2.0531 16 6 5.2163 -6.6050 -1.8311 17 6 4.5011 -7.6958 -1.3261 18 6 4.9737 -8.9727 -1.5599 19 7 6.0867 -9.1689 -2.2385 20 6 6.7934 -8.1694 -2.7272 21 6 6.3915 -6.8603 -2.5452 22 6 0.1234 -2.3182 0.9770 23 6 0.0531 -2.0582 2.3403 24 6 -1.1750 -2.0072 2.9693 25 6 -2.3339 -2.2241 2.2461 26 6 -2.2673 -2.4884 0.8902 27 6 -1.0428 -2.5361 0.2536 28 1 -0.4850 0.8368 -0.0735 29 1 3.9914 -3.0716 -0.2069 30 1 3.0551 -3.1491 -1.7187 31 1 3.5907 -7.5423 -0.7657 32 1 4.4264 -9.8216 -1.1776 33 1 7.6993 -8.3768 -3.2776 34 1 6.9758 -6.0463 -2.9482 35 1 0.9578 -1.8925 2.9063 36 1 -1.2306 -1.8012 4.0280 37 1 -3.2928 -2.1874 2.7414 38 1 -3.1741 -2.6577 0.3285 39 1 -0.9917 -2.7429 -0.8052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005717708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:53 Heat of formation + Delta-G solvation = -32.672672 kcal Electronic energy + Delta-G solvation = -26372.379843 eV Core-core repulsion = 22439.181140 eV Total energy + Delta-G solvation = -3933.198702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81877 -39.79579 -39.24973 -37.38759 -36.14879 -34.84063 -32.99064 -31.83238 -31.50158 -29.95617 -29.73162 -27.69236 -25.21493 -24.94634 -23.66215 -21.94914 -21.59665 -21.03220 -19.47963 -18.40396 -18.07031 -17.00137 -16.40502 -16.28463 -15.92807 -15.80575 -15.53794 -15.00076 -14.85384 -14.62141 -14.31687 -14.10570 -13.92226 -13.57993 -13.51372 -12.96295 -12.51739 -12.38280 -12.23613 -11.90636 -11.68036 -11.58043 -11.25583 -11.03611 -10.76989 -10.60821 -10.49459 -10.39962 -10.32313 -10.16628 -9.81574 -9.55574 -9.44120 -8.77850 -8.28118 -7.93819 -7.66837 -6.38926 -4.18862 0.40030 0.85386 2.34036 2.43811 2.52155 2.54704 2.98897 3.12579 3.15267 3.51124 3.60870 3.90084 4.17770 4.25924 4.51403 4.73913 4.75779 4.79270 4.89097 4.94154 5.33173 5.46500 5.53342 5.63767 5.67586 5.74150 5.79671 5.84899 5.88159 5.95667 6.34064 6.34290 6.48395 6.49572 6.71613 6.97207 7.16516 7.25767 7.38759 7.48615 7.62934 7.66054 7.72574 7.87223 8.27261 8.82444 9.14329 9.56840 10.45426 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.003275 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.250459 B = 8548.226450 C =10038.638647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.050 3.950 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.365 4.365 8 H 0.105 0.895 9 N -0.404 5.404 10 C 0.463 3.537 11 O -0.577 6.577 12 C 0.073 3.927 13 O -0.325 6.325 14 C 0.504 3.496 15 O -0.499 6.499 16 C -0.071 4.071 17 C -0.113 4.113 18 C 0.091 3.909 19 N -0.467 5.467 20 C 0.090 3.910 21 C -0.113 4.113 22 C 0.237 3.763 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.143 4.143 26 C -0.121 4.121 27 C -0.066 4.066 28 H 0.274 0.726 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.619 -8.374 -1.885 10.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.491 4.491 8 H 0.122 0.878 9 N -0.122 5.122 10 C 0.252 3.748 11 O -0.460 6.460 12 C -0.003 4.003 13 O -0.240 6.240 14 C 0.347 3.653 15 O -0.388 6.388 16 C -0.080 4.080 17 C -0.133 4.133 18 C -0.066 4.066 19 N -0.176 5.176 20 C -0.067 4.067 21 C -0.133 4.133 22 C 0.147 3.853 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.161 4.161 26 C -0.140 4.140 27 C -0.085 4.085 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.175 0.825 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.168 0.832 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.636 -9.240 -1.891 10.988 hybrid contribution 0.128 2.376 -0.019 2.380 sum 5.765 -6.864 -1.909 9.165 Atomic orbital electron populations 1.69944 1.05827 1.28166 1.43582 1.25281 0.95482 0.99850 0.95338 0.85944 0.79829 0.81283 0.78185 1.19053 1.20447 1.20279 1.19680 0.95411 0.83307 1.50655 0.87780 1.41178 1.16361 1.04947 1.49703 1.19432 0.87011 0.83700 0.84702 1.90615 1.65463 1.33194 1.56765 1.22721 0.97201 0.77966 1.02414 1.86521 1.38933 1.31859 1.66642 1.21051 0.79271 0.89248 0.75726 1.90837 1.55995 1.44596 1.47370 1.19564 0.96688 0.90982 1.00774 1.22713 1.00644 0.92642 0.97296 1.22865 0.92455 0.96363 0.94910 1.67548 1.06079 1.36496 1.07525 1.22770 0.99174 0.87517 0.97258 1.22347 0.95024 0.99409 0.96507 1.17041 0.84745 0.93609 0.89949 1.20975 0.97210 1.01785 0.94081 1.20668 0.92491 1.02318 0.98654 1.20761 0.97216 1.03648 0.94524 1.20690 0.96629 1.02101 0.94565 1.20801 0.91606 0.97645 0.98463 0.91469 0.88832 0.88317 0.82489 0.81716 0.81800 0.83242 0.87407 0.87496 0.87657 0.87465 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.88 10.34 55.49 0.57 -20.31 16 2 C 0.05 1.18 5.24 -17.49 -0.09 1.09 16 3 Si 0.92 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.37 -8.76 9.19 -14.94 -0.14 -8.90 16 8 H 0.10 2.34 6.46 -52.49 -0.34 2.00 16 9 N -0.40 -9.84 2.66 -58.98 -0.16 -9.99 16 10 C 0.46 10.88 7.66 -10.98 -0.08 10.79 16 11 O -0.58 -14.85 16.48 -14.10 -0.23 -15.09 16 12 C 0.07 1.45 4.50 36.01 0.16 1.61 16 13 O -0.33 -6.03 9.11 -47.09 -0.43 -6.46 16 14 C 0.50 8.25 7.92 34.75 0.28 8.52 16 15 O -0.50 -8.96 16.23 -19.21 -0.31 -9.27 16 16 C -0.07 -0.93 5.91 -104.66 -0.62 -1.55 16 17 C -0.11 -1.32 9.71 -39.00 -0.38 -1.70 16 18 C 0.09 0.93 11.17 -17.59 -0.20 0.73 16 19 N -0.47 -5.13 10.33 -13.31 -0.14 -5.27 16 20 C 0.09 0.86 11.17 -17.60 -0.20 0.66 16 21 C -0.11 -1.23 9.68 -39.01 -0.38 -1.61 16 22 C 0.24 5.71 2.29 -83.70 -0.19 5.52 16 23 C -0.12 -2.72 9.95 -39.37 -0.39 -3.11 16 24 C -0.12 -2.41 10.04 -39.61 -0.40 -2.81 16 25 C -0.14 -2.69 10.04 -39.53 -0.40 -3.09 16 26 C -0.12 -2.42 10.04 -39.61 -0.40 -2.81 16 27 C -0.07 -1.51 8.66 -39.37 -0.34 -1.85 16 28 H 0.27 6.54 8.32 -40.82 -0.34 6.20 16 29 H 0.09 1.75 7.52 -51.93 -0.39 1.36 16 30 H 0.10 1.89 8.13 -51.93 -0.42 1.47 16 31 H 0.16 1.84 7.71 -52.49 -0.40 1.44 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.15 1.46 7.74 -52.49 -0.41 1.05 16 35 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -30.29 351.53 -8.24 -38.53 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.06 Total: 7.33 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.76 Total: 1.49 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.28 Total: -35.57 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.97 Total: -30.82 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.29 -8.24 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005717708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.860 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds