Wall clock time and date at job start Tue Mar 31 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48502 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47185 * 299.99633 * 3 2 1 6 6 H 1.48502 * 109.47332 * 60.00154 * 3 2 1 7 7 C 1.38893 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 163.62530 * 7 2 1 9 9 N 1.37135 * 119.99961 * 343.61809 * 7 2 1 10 10 C 1.34777 * 120.00226 * 164.73831 * 9 7 2 11 11 O 1.21273 * 120.00186 * 174.95486 * 10 9 7 12 12 C 1.50703 * 119.99448 * 354.96226 * 10 9 7 13 13 O 1.45205 * 109.46811 * 179.97438 * 12 10 9 14 14 C 1.34672 * 117.00241 * 180.02562 * 13 12 10 15 15 O 1.21426 * 119.99436 * 359.97438 * 14 13 12 16 16 C 1.48036 * 120.00409 * 180.02562 * 14 13 12 17 17 C 1.39868 * 120.92726 * 359.71797 * 16 14 13 18 18 C 1.38149 * 118.99600 * 179.75061 * 17 16 14 19 19 N 1.31814 * 120.90152 * 0.53887 * 18 17 16 20 20 C 1.31807 * 122.05654 * 359.70827 * 19 18 17 21 21 C 1.38144 * 120.90825 * 0.02854 * 20 19 18 22 22 C 1.39789 * 119.99953 * 344.74609 * 9 7 2 23 23 C 1.38962 * 120.07833 * 281.19962 * 22 9 7 24 24 C 1.38077 * 119.92035 * 179.79205 * 23 22 9 25 25 C 1.38309 * 120.08329 * 0.46568 * 24 23 22 26 26 C 1.38303 * 120.14994 * 359.79075 * 25 24 23 27 27 C 1.38084 * 120.08033 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99905 * 5.01754 * 1 2 3 29 29 H 1.08998 * 109.47320 * 59.99702 * 12 10 9 30 30 H 1.08996 * 109.47016 * 299.99249 * 12 10 9 31 31 H 1.08002 * 120.49843 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.55005 * 180.24922 * 18 17 16 33 33 H 1.08006 * 119.54527 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.50618 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.03460 * 0.02562 * 23 22 9 36 36 H 1.08004 * 119.95996 * 180.25309 * 24 23 22 37 37 H 1.07995 * 119.92488 * 179.76768 * 25 24 23 38 38 H 1.08001 * 119.95931 * 179.97438 * 26 25 24 39 39 H 1.08004 * 120.03559 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3965 1.2125 7 6 2.0087 -1.2028 0.0005 8 1 3.0558 -1.2219 -0.2631 9 7 1.3647 -2.3662 0.3360 10 6 1.9286 -3.5559 0.0476 11 8 1.4047 -4.5826 0.4247 12 6 3.2102 -3.6102 -0.7434 13 8 3.6114 -4.9945 -0.9203 14 6 4.7458 -5.2189 -1.6107 15 8 5.3821 -4.2841 -2.0531 16 6 5.2163 -6.6050 -1.8311 17 6 4.5011 -7.6958 -1.3261 18 6 4.9737 -8.9727 -1.5599 19 7 6.0867 -9.1689 -2.2385 20 6 6.7934 -8.1694 -2.7272 21 6 6.3915 -6.8603 -2.5452 22 6 0.1234 -2.3182 0.9770 23 6 0.0531 -2.0582 2.3403 24 6 -1.1750 -2.0072 2.9693 25 6 -2.3339 -2.2241 2.2461 26 6 -2.2673 -2.4884 0.8902 27 6 -1.0428 -2.5361 0.2536 28 1 -0.4850 0.8368 -0.0735 29 1 3.9914 -3.0716 -0.2069 30 1 3.0551 -3.1491 -1.7187 31 1 3.5907 -7.5423 -0.7657 32 1 4.4264 -9.8216 -1.1776 33 1 7.6993 -8.3768 -3.2776 34 1 6.9758 -6.0463 -2.9482 35 1 0.9578 -1.8925 2.9063 36 1 -1.2306 -1.8012 4.0280 37 1 -3.2928 -2.1874 2.7414 38 1 -3.1741 -2.6577 0.3285 39 1 -0.9917 -2.7429 -0.8052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005717708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:53 Heat of formation + Delta-G solvation = -47.751201 kcal Electronic energy + Delta-G solvation = -26373.033697 eV Core-core repulsion = 22439.181140 eV Total energy + Delta-G solvation = -3933.852557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02971 -41.24227 -40.59693 -39.03925 -37.61141 -36.64973 -33.95499 -33.67764 -32.33603 -31.58529 -31.36314 -29.26624 -26.95435 -26.16425 -24.51578 -23.48602 -23.23069 -22.29493 -21.27385 -19.76160 -19.60060 -18.28053 -17.90212 -17.83733 -17.27413 -16.93462 -16.73145 -16.55980 -16.36587 -16.19353 -15.81565 -15.34956 -15.09963 -14.81127 -14.70908 -14.55556 -14.12369 -13.94213 -13.86351 -13.40543 -13.26160 -12.91546 -12.77233 -12.72956 -12.24581 -12.10265 -12.08598 -12.01229 -11.93269 -11.32300 -11.13368 -10.70652 -10.61026 -10.25248 -10.08941 -9.58830 -9.36839 -8.18416 -6.06455 -0.60858 0.04009 0.73007 0.79292 1.16179 1.31481 1.34114 1.45461 1.56361 1.73466 2.22185 2.71775 2.73641 3.01162 3.20845 3.37489 3.46824 3.74741 3.84483 3.91100 3.99033 4.06900 4.14924 4.23323 4.28075 4.38861 4.52366 4.67415 4.73818 4.79424 4.89020 4.98633 5.05179 5.12064 5.32248 5.34504 5.53836 5.60679 5.75579 5.78801 5.97323 6.19116 6.37312 6.51867 6.81374 6.97341 7.32577 7.74657 8.63405 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.003275 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.250459 B = 8548.226450 C =10038.638647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.013 3.987 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.383 4.383 8 H 0.113 0.887 9 N -0.410 5.410 10 C 0.450 3.550 11 O -0.609 6.609 12 C 0.085 3.915 13 O -0.337 6.337 14 C 0.505 3.495 15 O -0.519 6.519 16 C -0.092 4.092 17 C -0.120 4.120 18 C 0.097 3.903 19 N -0.477 5.477 20 C 0.099 3.901 21 C -0.111 4.111 22 C 0.207 3.793 23 C -0.147 4.147 24 C -0.119 4.119 25 C -0.137 4.137 26 C -0.120 4.120 27 C -0.093 4.093 28 H 0.273 0.727 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.194 0.806 33 H 0.202 0.798 34 H 0.160 0.840 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 -8.618 -1.609 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.508 4.508 8 H 0.131 0.869 9 N -0.127 5.127 10 C 0.240 3.760 11 O -0.496 6.496 12 C 0.008 3.992 13 O -0.251 6.251 14 C 0.350 3.650 15 O -0.409 6.409 16 C -0.101 4.101 17 C -0.140 4.140 18 C -0.059 4.059 19 N -0.187 5.187 20 C -0.057 4.057 21 C -0.130 4.130 22 C 0.117 3.883 23 C -0.167 4.167 24 C -0.138 4.138 25 C -0.155 4.155 26 C -0.139 4.139 27 C -0.113 4.113 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.168 0.832 32 H 0.211 0.789 33 H 0.218 0.782 34 H 0.178 0.822 35 H 0.119 0.881 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.155 0.845 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.922 -9.490 -1.618 11.303 hybrid contribution 0.000 2.386 -0.104 2.388 sum 5.922 -7.104 -1.722 9.408 Atomic orbital electron populations 1.70092 1.06974 1.28618 1.43802 1.26056 0.96209 1.02436 0.94727 0.84983 0.78983 0.77319 0.77823 1.18259 1.20234 1.20474 1.20038 0.96014 0.83639 1.51127 0.86926 1.41409 1.16649 1.05249 1.49370 1.19989 0.87995 0.83220 0.84769 1.90563 1.66696 1.34074 1.58243 1.22460 0.95743 0.79093 1.01893 1.86532 1.40266 1.30886 1.67465 1.21646 0.78185 0.90563 0.74651 1.90811 1.56319 1.45558 1.48227 1.19574 0.98315 0.89273 1.02970 1.22722 1.00565 0.93106 0.97627 1.23266 0.92248 0.96389 0.94035 1.67663 1.06346 1.36966 1.07747 1.23346 0.99720 0.86450 0.96190 1.22539 0.94097 1.00551 0.95858 1.17379 0.84939 0.95062 0.90899 1.21139 0.98476 1.03330 0.93748 1.21104 0.91619 1.00642 1.00412 1.21242 0.98787 1.01536 0.93934 1.21083 0.96461 1.00698 0.95624 1.20839 0.92909 0.99729 0.97809 0.91623 0.87980 0.88075 0.83194 0.78943 0.78159 0.82239 0.88073 0.84059 0.83305 0.84531 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.28 10.34 21.65 0.22 -43.05 16 2 C 0.01 0.60 5.24 84.91 0.44 1.05 16 3 Si 0.99 38.46 29.59 68.60 2.03 40.49 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.38 -18.84 9.19 84.02 0.77 -18.06 16 8 H 0.11 5.16 6.46 -2.91 -0.02 5.14 16 9 N -0.41 -20.76 2.66 -458.90 -1.22 -21.98 16 10 C 0.45 22.20 7.66 87.66 0.67 22.87 16 11 O -0.61 -32.98 16.48 15.79 0.26 -32.72 16 12 C 0.08 3.49 4.50 71.24 0.32 3.81 16 13 O -0.34 -13.02 9.11 -49.43 -0.45 -13.47 16 14 C 0.50 16.95 7.92 70.42 0.56 17.51 16 15 O -0.52 -18.96 16.23 20.08 0.33 -18.63 16 16 C -0.09 -2.43 5.91 -19.89 -0.12 -2.55 16 17 C -0.12 -2.80 9.71 22.64 0.22 -2.58 16 18 C 0.10 1.83 11.17 84.67 0.95 2.77 16 19 N -0.48 -9.40 10.33 -196.01 -2.03 -11.42 16 20 C 0.10 1.66 11.17 84.67 0.95 2.60 16 21 C -0.11 -2.26 9.68 22.64 0.22 -2.04 16 22 C 0.21 10.29 2.29 38.22 0.09 10.38 16 23 C -0.15 -6.72 9.95 22.40 0.22 -6.50 16 24 C -0.12 -4.49 10.04 22.25 0.22 -4.27 16 25 C -0.14 -4.79 10.04 22.30 0.22 -4.57 16 26 C -0.12 -4.67 10.04 22.25 0.22 -4.45 16 27 C -0.09 -4.41 8.66 22.41 0.19 -4.22 16 28 H 0.27 13.12 8.32 -92.71 -0.77 12.34 16 29 H 0.10 3.97 7.52 -2.39 -0.02 3.95 16 30 H 0.10 4.06 8.13 -2.39 -0.02 4.04 16 31 H 0.15 3.66 7.71 -2.91 -0.02 3.64 16 32 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.16 2.89 7.74 -2.91 -0.02 2.87 16 35 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.09 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -67.21 351.53 6.38 -60.83 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 1.08 Total: 28.20 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.16 Total: 11.76 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -3.02 Total: -76.45 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: 0.14 Total: -64.82 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -67.21 6.38 -60.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005717708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.075 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds