Wall clock time and date at job start Tue Mar 31 2020 14:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37732 * 119.90111 * 179.79254 * 4 3 2 6 6 C 1.38971 * 120.09443 * 0.48448 * 5 4 3 7 7 O 1.35754 * 119.90259 * 179.72341 * 6 5 4 8 8 C 1.42895 * 117.00630 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47603 * 179.97438 * 8 7 6 10 10 C 1.35131 * 125.61706 * 89.99765 * 9 8 7 11 11 C 1.40362 * 107.11623 * 180.02562 * 10 9 8 12 12 C 1.36538 * 106.70776 * 0.02562 * 11 10 9 13 13 C 1.46662 * 125.98608 * 179.97438 * 12 11 10 14 14 O 1.21696 * 120.00202 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00026 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00104 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47067 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99837 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47342 * 119.99695 * 21 19 17 24 24 H 1.48493 * 109.47106 * 239.99938 * 21 19 17 25 25 O 1.33934 * 125.61769 * 269.69763 * 9 8 7 26 26 C 1.38962 * 120.18650 * 359.74606 * 6 5 4 27 27 C 1.37732 * 120.09974 * 0.02562 * 26 6 5 28 28 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.95524 * 180.20527 * 5 4 3 30 30 H 1.09005 * 109.46999 * 300.00435 * 8 7 6 31 31 H 1.09003 * 109.47119 * 59.99968 * 8 7 6 32 32 H 1.08001 * 126.43826 * 359.97137 * 10 9 8 33 33 H 1.08005 * 126.64614 * 180.02562 * 11 10 9 34 34 H 0.97006 * 119.99882 * 0.02562 * 15 13 12 35 35 H 1.08997 * 109.47457 * 299.99944 * 16 15 13 36 36 H 1.08999 * 109.47415 * 60.00190 * 16 15 13 37 37 H 0.96999 * 119.99914 * 180.02562 * 20 19 17 38 38 H 1.08003 * 119.94952 * 180.02562 * 26 6 5 39 39 H 1.07996 * 120.04689 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.2007 1.1881 6 6 5.3389 0.0034 -0.0002 7 8 6.6964 0.0053 -0.0003 8 6 7.3451 0.2154 1.2554 9 6 8.8391 0.1845 1.0606 10 6 9.6181 1.2520 0.7782 11 6 10.9381 0.7853 0.6787 12 6 10.8971 -0.5601 0.9078 13 6 12.0471 -1.4703 0.9044 14 8 13.1635 -1.0395 0.6830 15 7 11.8675 -2.7840 1.1463 16 6 13.0162 -3.6931 1.1434 17 6 12.5481 -5.0950 1.4379 18 1 11.4999 -5.2892 1.6104 19 6 13.4584 -6.1294 1.4881 20 7 14.7350 -5.8928 1.2785 21 14 12.8781 -7.8673 1.8525 22 1 11.4059 -7.8669 2.0472 23 1 13.2260 -8.7543 0.7136 24 1 13.5409 -8.3621 3.0857 25 8 9.6143 -0.9044 1.1444 26 6 4.6461 -0.1956 -1.1883 27 6 3.2688 -0.1973 -1.1928 28 1 2.7309 0.3627 2.1152 29 1 5.1882 0.3554 2.1092 30 1 7.0508 1.1844 1.6588 31 1 7.0535 -0.5714 1.9511 32 1 9.2870 2.2722 0.6518 33 1 11.8161 1.3760 0.4628 34 1 10.9775 -3.1275 1.3223 35 1 13.4964 -3.6688 0.1652 36 1 13.7293 -3.3801 1.9060 37 1 15.3752 -6.6206 1.3135 38 1 5.1885 -0.3490 -2.1095 39 1 2.7313 -0.3516 -2.1167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427612864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:39 Heat of formation + Delta-G solvation = -3.001538 kcal Electronic energy + Delta-G solvation = -24654.077039 eV Core-core repulsion = 20722.164973 eV Total energy + Delta-G solvation = -3931.912065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.78169 -40.76380 -38.75100 -38.43685 -36.53856 -34.47010 -33.29494 -32.40796 -32.11112 -31.56207 -30.48611 -28.05412 -26.55171 -23.92990 -23.68816 -22.94664 -21.77588 -21.36409 -19.93599 -19.44013 -18.80320 -18.38365 -17.02902 -16.40594 -16.28786 -16.08678 -15.49219 -15.28051 -15.06052 -14.52938 -14.43895 -14.35988 -14.19094 -14.11313 -13.78315 -13.60649 -13.14257 -13.02717 -12.94585 -12.80651 -12.62164 -12.34727 -12.06377 -11.95533 -11.52038 -11.44038 -11.02412 -10.96187 -10.40679 -10.11379 -9.70586 -9.64055 -9.44846 -8.85925 -8.80487 -8.73011 -8.03592 -6.22577 -4.29840 0.31479 0.71998 0.95020 2.03381 2.27069 2.45432 2.48100 3.00931 3.20922 3.28252 3.31363 3.36458 3.47733 3.61606 3.82252 4.10296 4.20097 4.30244 4.33597 4.48462 4.59414 4.66438 4.81875 4.87253 4.97026 5.14068 5.18967 5.35687 5.44991 5.57010 5.65058 5.68610 5.75758 5.82110 5.99393 6.25330 6.73194 6.76060 7.09179 7.14748 7.23474 7.39670 7.58054 7.87522 8.42101 8.61549 8.85678 9.36473 10.87589 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.002156 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.522046 B =12982.510127 C =14789.506887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.259 3.741 3 C -0.075 4.075 4 C -0.025 4.025 5 C -0.214 4.214 6 C 0.167 3.833 7 O -0.301 6.301 8 C 0.142 3.858 9 C -0.019 4.019 10 C -0.177 4.177 11 C -0.144 4.144 12 C -0.032 4.032 13 C 0.579 3.421 14 O -0.530 6.530 15 N -0.693 5.693 16 C 0.246 3.754 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 O -0.153 6.153 26 C -0.151 4.151 27 C -0.028 4.028 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.397 0.603 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.145 0.855 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.777 15.548 -0.765 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.056 4.056 3 C -0.079 4.079 4 C -0.046 4.046 5 C -0.232 4.232 6 C 0.120 3.880 7 O -0.214 6.214 8 C 0.067 3.933 9 C -0.071 4.071 10 C -0.196 4.196 11 C -0.165 4.165 12 C -0.086 4.086 13 C 0.362 3.638 14 O -0.410 6.410 15 N -0.340 5.340 16 C 0.126 3.874 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 O -0.048 6.048 26 C -0.169 4.169 27 C -0.048 4.048 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.230 0.770 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.473 15.366 -1.010 26.424 hybrid contribution -0.132 -0.932 0.453 1.044 sum -21.605 14.435 -0.557 25.989 Atomic orbital electron populations 1.81277 1.12112 1.09484 1.07199 1.25649 0.92560 0.93476 0.93884 1.15923 0.84437 1.12122 0.95379 1.20957 0.93334 0.93486 0.96813 1.21236 0.94879 1.09235 0.97887 1.19291 0.82232 0.92324 0.94200 1.86186 1.16185 1.85903 1.33140 1.20978 0.83976 1.03474 0.84823 1.21741 0.91966 0.85178 1.08203 1.21608 0.92752 0.99966 1.05292 1.21942 0.98470 0.93182 1.02904 1.22844 0.82250 0.95852 1.07637 1.16689 0.85397 0.82317 0.79394 1.90861 1.22218 1.76578 1.51302 1.46504 1.13676 1.06611 1.67178 1.19278 0.83121 0.86725 0.98273 1.21231 0.94580 0.91735 1.50801 0.91680 1.24948 0.94698 0.99609 0.94700 1.69977 1.01412 1.32821 1.47936 0.86330 0.78891 0.83480 0.78054 1.19582 1.20726 1.20741 1.84036 1.17243 1.35106 1.68431 1.20419 0.93142 1.06071 0.97311 1.20991 0.93022 0.93886 0.96925 0.84558 0.84103 0.88051 0.89325 0.82513 0.81931 0.76957 0.94890 0.94893 0.92393 0.83759 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.53 18.54 41.83 0.78 -3.76 16 2 C 0.26 2.09 15.33 -22.47 -0.34 1.74 16 3 C -0.07 -0.44 5.74 -106.84 -0.61 -1.06 16 4 C -0.03 -0.12 9.75 -39.20 -0.38 -0.50 16 5 C -0.21 -1.06 9.01 -39.49 -0.36 -1.41 16 6 C 0.17 1.11 6.69 -39.04 -0.26 0.85 16 7 O -0.30 -2.53 10.11 -18.97 -0.19 -2.72 16 8 C 0.14 0.98 5.26 36.00 0.19 1.17 16 9 C -0.02 -0.21 6.94 -35.42 -0.25 -0.45 16 10 C -0.18 -1.85 10.77 -39.89 -0.43 -2.28 16 11 C -0.14 -1.96 10.62 -39.40 -0.42 -2.37 16 12 C -0.03 -0.52 7.13 -36.80 -0.26 -0.79 16 13 C 0.58 11.77 7.79 -12.86 -0.10 11.67 16 14 O -0.53 -12.45 16.86 5.19 0.09 -12.36 16 15 N -0.69 -14.70 5.54 -62.81 -0.35 -15.05 16 16 C 0.25 6.38 5.43 -5.20 -0.03 6.35 16 17 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 18 H 0.07 1.64 7.60 -52.49 -0.40 1.24 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.49 13.29 55.43 0.74 -24.76 16 21 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 O -0.15 -2.17 10.40 4.99 0.05 -2.12 16 26 C -0.15 -0.90 9.97 -39.50 -0.39 -1.29 16 27 C -0.03 -0.14 9.75 -39.20 -0.38 -0.53 16 28 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 29 H 0.14 0.40 6.28 -52.49 -0.33 0.07 16 30 H 0.10 0.38 7.65 -51.93 -0.40 -0.02 16 31 H 0.09 0.50 7.65 -51.93 -0.40 0.10 16 32 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 34 H 0.40 7.48 8.08 -40.82 -0.33 7.15 16 35 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 362.65 15.07 5.46 5.46 Total: -1.00 -33.43 362.65 -6.84 -40.27 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.95 Total: 1.63 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.44 Total: -2.11 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 1.16 Total: -43.56 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.43 -6.84 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427612864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.268 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds