Wall clock time and date at job start Tue Mar 31 2020 14:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.50708 * 109.47063 * 119.99892 * 2 1 3 5 5 H 1.07997 * 119.99964 * 120.00546 * 4 2 1 6 6 C 1.37877 * 119.99764 * 299.99518 * 4 2 1 7 7 N 1.31512 * 119.99854 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99997 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47374 * 89.99601 * 8 6 4 10 10 H 1.48499 * 109.46996 * 209.99270 * 8 6 4 11 11 H 1.48497 * 109.46937 * 329.99344 * 8 6 4 12 12 N 1.46496 * 109.47247 * 239.99732 * 2 1 3 13 13 C 1.46504 * 120.00230 * 299.99752 * 12 2 1 14 14 C 1.34774 * 120.00207 * 119.99863 * 12 2 1 15 15 O 1.21588 * 120.00093 * 0.02562 * 14 12 2 16 16 N 1.34778 * 120.00227 * 179.97438 * 14 12 2 17 17 C 1.39954 * 119.99912 * 184.60712 * 16 14 12 18 18 C 1.38865 * 120.06803 * 324.65526 * 17 16 14 19 19 C 1.38115 * 119.92657 * 179.74076 * 18 17 16 20 20 C 1.38286 * 120.07120 * 0.52036 * 19 18 17 21 21 S 1.76198 * 119.92851 * 179.73954 * 20 19 18 22 22 C 1.81404 * 104.44724 * 270.01988 * 21 20 19 23 23 O 1.42096 * 104.27915 * 26.09117 * 21 20 19 24 24 O 1.42099 * 104.27296 * 153.95006 * 21 20 19 25 25 C 1.38280 * 120.13822 * 359.76015 * 20 19 18 26 26 C 1.38118 * 120.06660 * 359.97438 * 25 20 19 27 27 H 1.08998 * 109.46746 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47117 * 300.00201 * 1 2 3 29 29 H 1.08996 * 109.46780 * 60.00521 * 1 2 3 30 30 H 0.97001 * 120.00214 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47676 * 270.00344 * 13 12 2 32 32 H 1.09006 * 109.46461 * 30.00239 * 13 12 2 33 33 H 1.09000 * 109.47265 * 149.99386 * 13 12 2 34 34 H 0.96991 * 120.00142 * 4.60547 * 16 14 12 35 35 H 1.07998 * 120.03661 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.96539 * 180.23247 * 19 18 17 37 37 H 1.08995 * 109.47144 * 60.00362 * 22 21 20 38 38 H 1.09006 * 109.46649 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47303 * 299.99793 * 22 21 20 40 40 H 1.07996 * 119.96531 * 179.97438 * 25 20 19 41 41 H 1.08003 * 120.02861 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8730 2.6997 10 1 0.9759 1.9953 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0873 1.1282 -1.8908 16 7 3.2429 -0.6713 -3.1835 17 6 4.1251 -0.0224 -4.0549 18 6 4.0033 1.3425 -4.2793 19 6 4.8789 1.9808 -5.1358 20 6 5.8693 1.2602 -5.7777 21 16 6.9800 2.0772 -6.8748 22 6 6.1710 1.9768 -8.4954 23 8 7.0048 3.4205 -6.4123 24 8 8.1509 1.2725 -6.8512 25 6 5.9895 -0.1001 -5.5608 26 6 5.1205 -0.7433 -4.7013 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.9026 -0.5282 4.4376 31 1 2.4157 -2.7378 -0.9715 32 1 0.6904 -2.3002 -0.9845 33 1 1.6238 -2.2853 -2.5001 34 1 2.9551 -1.5783 -3.3713 35 1 3.2276 1.9052 -3.7812 36 1 4.7870 3.0431 -5.3079 37 1 5.2033 2.4761 -8.4499 38 1 6.7963 2.4630 -9.2443 39 1 6.0279 0.9306 -8.7658 40 1 6.7638 -0.6602 -6.0639 41 1 5.2147 -1.8059 -4.5326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152826310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:46 Heat of formation + Delta-G solvation = -44.050611 kcal Electronic energy + Delta-G solvation = -25328.983302 eV Core-core repulsion = 21530.735167 eV Total energy + Delta-G solvation = -3798.248136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61057 -38.78830 -37.26030 -36.11986 -35.92275 -34.74850 -32.81633 -31.12822 -30.81265 -29.89483 -29.21027 -26.51051 -25.20797 -23.63566 -23.05594 -21.38794 -19.42724 -19.20961 -18.30722 -17.78187 -17.19988 -16.59264 -16.39058 -16.06065 -15.69105 -15.20958 -14.69107 -14.58310 -14.47111 -13.77206 -13.64684 -13.52081 -13.36728 -13.28100 -13.16527 -12.96680 -12.60121 -12.32055 -12.24414 -12.14488 -11.97406 -11.76338 -11.54912 -11.34949 -11.27047 -10.89573 -10.75840 -10.51549 -10.22262 -9.75665 -9.60866 -9.38815 -9.09401 -8.70140 -8.48814 -7.87087 -6.20845 -4.22469 -0.13096 0.75109 1.25433 2.67767 2.82584 3.18194 3.20601 3.33242 3.34672 3.60763 3.82211 3.91058 4.14246 4.29207 4.44565 4.55181 4.75569 4.78608 5.10976 5.17851 5.28476 5.29916 5.34592 5.47500 5.74145 5.78007 5.84337 6.00912 6.06978 6.12546 6.19434 6.21880 6.36363 6.42030 6.68020 6.73922 6.90778 7.17910 7.34762 7.52799 8.17727 8.37631 8.78467 8.85846 9.39188 10.91850 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.002657 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.892835 B =10534.890319 C =10861.628744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.244 3.756 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.595 5.595 13 C 0.085 3.915 14 C 0.698 3.302 15 O -0.574 6.574 16 N -0.694 5.694 17 C 0.236 3.764 18 C -0.145 4.145 19 C -0.005 4.005 20 C -0.689 4.689 21 S 2.506 3.494 22 C -0.652 4.652 23 O -0.940 6.940 24 O -0.942 6.942 25 C -0.004 4.004 26 C -0.176 4.176 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.267 0.733 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.407 0.593 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -0.498 -24.715 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.328 5.328 13 C -0.058 4.058 14 C 0.400 3.600 15 O -0.451 6.451 16 N -0.343 5.343 17 C 0.138 3.862 18 C -0.166 4.166 19 C -0.024 4.024 20 C -0.778 4.778 21 S 2.686 3.314 22 C -0.801 4.801 23 O -0.937 6.937 24 O -0.940 6.940 25 C -0.024 4.024 26 C -0.198 4.198 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.245 0.755 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.222 0.669 -24.007 24.232 hybrid contribution -1.600 -0.401 0.274 1.672 sum 1.623 0.268 -23.733 23.790 Atomic orbital electron populations 1.22486 0.98983 1.01138 0.99459 1.19281 0.89829 0.95009 0.81651 0.91673 1.21138 1.32958 1.14405 0.88433 0.90352 1.24858 0.95650 0.96586 0.95572 1.69866 1.45003 1.40137 0.98029 0.86916 0.80347 0.83777 0.77670 1.20352 1.22020 1.18735 1.47222 1.50706 1.11811 1.23099 1.21586 1.02690 0.82911 0.98662 1.15921 0.79597 0.85040 0.79419 1.90891 1.62090 1.15224 1.76899 1.43120 1.48371 1.18907 1.23879 1.17908 0.88096 0.92498 0.87686 1.21549 1.02083 0.93919 0.99072 1.20817 0.90380 0.99484 0.91750 1.30259 1.19238 1.05706 1.22569 1.04897 0.75117 0.74562 0.76810 1.30249 1.15093 1.11933 1.22849 1.93585 1.86344 1.34925 1.78862 1.93571 1.43810 1.70061 1.86527 1.20621 0.95495 0.92038 0.94207 1.20982 0.95879 1.00832 1.02123 0.92480 0.92894 0.94715 0.92321 0.92450 0.90064 0.93421 0.75470 0.83044 0.84045 0.85034 0.85328 0.85102 0.84040 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.65 37.16 0.32 -3.00 16 2 C 0.24 5.67 2.23 -69.08 -0.15 5.52 16 3 H 0.07 1.70 5.96 -51.93 -0.31 1.39 16 4 C -0.53 -14.34 8.95 -34.44 -0.31 -14.65 16 5 H 0.08 2.28 7.89 -52.49 -0.41 1.87 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 8 Si 0.88 21.40 24.37 -169.99 -4.14 17.25 16 9 H -0.28 -6.37 6.87 56.52 0.39 -5.98 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 12 N -0.59 -11.53 2.75 -181.00 -0.50 -12.02 16 13 C 0.09 1.25 9.48 59.85 0.57 1.82 16 14 C 0.70 13.37 8.12 -86.92 -0.71 12.66 16 15 O -0.57 -13.06 13.12 5.29 0.07 -12.99 16 16 N -0.69 -9.88 5.22 -14.22 -0.07 -9.95 16 17 C 0.24 3.27 6.29 -83.69 -0.53 2.74 16 18 C -0.14 -2.10 8.69 -39.39 -0.34 -2.44 16 19 C 0.00 -0.06 9.46 -39.61 -0.37 -0.43 16 20 C -0.69 -7.32 5.66 -39.55 -0.22 -7.54 16 21 S 2.51 21.85 5.80 -107.50 -0.62 21.23 16 22 C -0.65 -2.63 10.80 101.05 1.09 -1.54 16 23 O -0.94 -11.61 17.12 -57.54 -0.99 -12.59 16 24 O -0.94 -11.04 17.12 -57.54 -0.98 -12.03 16 25 C 0.00 -0.04 9.46 -39.61 -0.37 -0.42 16 26 C -0.18 -1.96 9.97 -39.40 -0.39 -2.36 16 27 H 0.06 1.07 6.66 -51.93 -0.35 0.72 16 28 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 33 H 0.05 0.49 6.30 -51.93 -0.33 0.16 16 34 H 0.41 4.35 6.52 -40.82 -0.27 4.08 16 35 H 0.15 2.46 6.24 -52.49 -0.33 2.13 16 36 H 0.14 1.46 7.57 -52.49 -0.40 1.07 16 37 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 40 H 0.14 1.11 7.56 -52.49 -0.40 0.71 16 41 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -37.91 344.65 -7.80 -45.71 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.01 Total: 3.57 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.52 Total: -7.59 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.20 Total: -47.75 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.90 Total: -37.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.25 kcal Atomic # 16 Polarization: 21.85 SS G_CDS: -0.62 Total: 21.23 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.91 -7.80 -45.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152826310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.655 kcal (2) G-P(sol) polarization free energy of solvation -37.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds