Wall clock time and date at job start Tue Mar 31 2020 14:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34974 * 117.00458 * 2 1 4 4 O 1.21706 * 119.99437 * 359.97438 * 3 2 1 5 5 C 1.41467 * 120.00368 * 180.02562 * 3 2 1 6 6 S 1.75816 * 125.48308 * 0.02562 * 5 3 2 7 7 C 1.70569 * 91.68702 * 179.97438 * 6 5 3 8 8 C 1.33587 * 111.20635 * 359.74818 * 7 6 5 9 9 C 1.37541 * 125.48384 * 180.02562 * 5 3 2 10 10 N 1.39493 * 123.51439 * 359.97438 * 9 5 3 11 11 C 1.34781 * 120.00316 * 186.65826 * 10 9 5 12 12 O 1.21283 * 119.99570 * 354.61623 * 11 10 9 13 13 C 1.50694 * 119.99924 * 174.61948 * 11 10 9 14 14 N 1.46899 * 109.47109 * 179.97438 * 13 11 10 15 15 C 1.46898 * 110.99878 * 293.95543 * 14 13 11 16 16 C 1.46903 * 111.00146 * 169.99750 * 14 13 11 17 17 H 1.08997 * 109.47039 * 309.99799 * 16 14 13 18 18 C 1.53002 * 109.46910 * 70.00194 * 16 14 13 19 19 C 1.50701 * 109.46768 * 190.00009 * 16 14 13 20 20 H 1.07994 * 120.00340 * 359.97438 * 19 16 14 21 21 C 1.37878 * 119.99605 * 180.02562 * 19 16 14 22 22 N 1.31516 * 120.00103 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 120.00065 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.47028 * 270.00046 * 23 21 19 25 25 H 1.48501 * 109.46865 * 29.99734 * 23 21 19 26 26 H 1.48501 * 109.47361 * 150.00014 * 23 21 19 27 27 H 1.09001 * 109.46861 * 299.99953 * 1 2 3 28 28 H 1.08990 * 109.47348 * 59.99828 * 1 2 3 29 29 H 1.09005 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.07998 * 124.39870 * 180.02562 * 7 6 5 31 31 H 1.07998 * 122.44962 * 180.23595 * 8 7 6 32 32 H 0.97005 * 119.99642 * 6.65650 * 10 9 5 33 33 H 1.08997 * 109.47586 * 60.00061 * 13 11 10 34 34 H 1.09003 * 109.47211 * 299.99512 * 13 11 10 35 35 H 1.09000 * 109.47303 * 296.04131 * 15 14 13 36 36 H 1.08998 * 109.47538 * 56.04504 * 15 14 13 37 37 H 1.09004 * 109.47161 * 176.04776 * 15 14 13 38 38 H 1.09004 * 109.47022 * 59.99677 * 18 16 14 39 39 H 1.08995 * 109.46999 * 179.97438 * 18 16 14 40 40 H 1.08997 * 109.46978 * 299.99668 * 18 16 14 41 41 H 0.97005 * 119.99721 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0419 1.2026 0.0000 4 8 1.3790 2.2233 -0.0005 5 6 3.4546 1.2766 -0.0005 6 16 4.5486 -0.0997 -0.0019 7 6 5.9145 0.9219 -0.0026 8 6 5.5555 2.2087 -0.0073 9 6 4.1933 2.4368 -0.0001 10 7 3.6259 3.7111 0.0004 11 6 4.4108 4.7984 -0.1345 12 8 5.6173 4.6762 -0.1582 13 6 3.7895 6.1659 -0.2558 14 7 4.8487 7.1749 -0.3903 15 6 5.6507 7.2630 0.8373 16 6 4.2863 8.4843 -0.7469 17 1 3.6117 8.3710 -1.5956 18 6 3.5139 9.0498 0.4466 19 6 5.4028 9.4271 -1.1151 20 1 6.4276 9.0877 -1.0865 21 6 5.1160 10.7233 -1.4873 22 7 3.8680 11.1367 -1.5216 23 14 6.4999 11.8922 -1.9430 24 1 6.9643 12.6074 -0.7272 25 1 7.6278 11.1210 -2.5247 26 1 6.0080 12.8775 -2.9392 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 6.9368 0.5738 -0.0039 31 1 6.2776 3.0117 -0.0122 32 1 2.6663 3.8147 0.0979 33 1 3.1984 6.3769 0.6354 34 1 3.1452 6.1957 -1.1345 35 1 5.0221 7.6087 1.6580 36 1 6.0551 6.2800 1.0785 37 1 6.4700 7.9660 0.6863 38 1 4.1886 9.1630 1.2953 39 1 3.0970 10.0215 0.1822 40 1 2.7064 8.3679 0.7129 41 1 3.6662 12.0488 -1.7832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267911062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:08 Heat of formation + Delta-G solvation = -58.848978 kcal Electronic energy + Delta-G solvation = -25358.605547 eV Core-core repulsion = 21559.715706 eV Total energy + Delta-G solvation = -3798.889841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13044 -40.23632 -38.06279 -36.72255 -36.38898 -34.12314 -32.71772 -30.70828 -29.33737 -27.99931 -27.33079 -25.24678 -25.05860 -23.77765 -22.44350 -21.23717 -19.71997 -19.24485 -18.77109 -17.58192 -17.25115 -16.75306 -16.11353 -15.85920 -15.53653 -15.41186 -14.91671 -14.41964 -14.19653 -14.03307 -13.86020 -13.72497 -13.38664 -12.91252 -12.89904 -12.67333 -12.50086 -12.27175 -11.63012 -11.23480 -11.10832 -11.07680 -11.02041 -10.88378 -10.82181 -10.72686 -10.66578 -10.45239 -10.09583 -9.98576 -9.39755 -9.07951 -8.90573 -8.39755 -8.07495 -7.22632 -6.02187 -4.05277 0.08725 1.26089 1.66993 2.00651 2.47930 2.58558 2.99693 3.07442 3.31895 3.38428 3.43707 4.41103 4.51484 4.81376 4.86849 4.89415 4.93949 5.00451 5.07484 5.28427 5.30347 5.47300 5.65907 5.73666 5.79935 5.96313 6.11050 6.28051 6.37481 6.48810 6.64898 6.77733 6.92671 7.04301 7.27911 7.41183 7.49442 7.67068 7.81737 8.03582 8.16087 8.32368 8.52831 9.00802 9.59666 11.05194 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002693 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.718202 B =10393.890070 C =11330.942042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.552 3.448 4 O -0.520 6.520 5 C -0.355 4.355 6 S 0.233 5.767 7 C -0.195 4.195 8 C -0.181 4.181 9 C 0.266 3.734 10 N -0.649 5.649 11 C 0.517 3.483 12 O -0.487 6.487 13 C 0.038 3.962 14 N -0.516 5.516 15 C 0.028 3.972 16 C 0.211 3.789 17 H 0.041 0.959 18 C -0.175 4.175 19 C -0.496 4.496 20 H 0.064 0.936 21 C 0.058 3.942 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.282 1.282 25 H -0.273 1.273 26 H -0.287 1.287 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.176 0.824 31 H 0.192 0.808 32 H 0.427 0.573 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.015 0.985 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.090 0.910 40 H 0.006 0.994 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -24.212 4.870 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.401 3.599 4 O -0.412 6.412 5 C -0.476 4.476 6 S 0.499 5.501 7 C -0.334 4.334 8 C -0.214 4.214 9 C 0.150 3.850 10 N -0.297 5.297 11 C 0.306 3.694 12 O -0.359 6.359 13 C -0.094 4.094 14 N -0.240 5.240 15 C -0.120 4.120 16 C 0.105 3.895 17 H 0.058 0.942 18 C -0.234 4.234 19 C -0.535 4.535 20 H 0.082 0.918 21 C -0.143 4.143 22 N -0.536 5.536 23 Si 0.726 3.274 24 H -0.208 1.208 25 H -0.198 1.198 26 H -0.213 1.213 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.193 0.807 31 H 0.208 0.792 32 H 0.268 0.732 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.025 0.975 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.100 -25.442 4.390 26.003 hybrid contribution -0.408 2.577 0.453 2.648 sum -3.507 -22.865 4.842 23.634 Atomic orbital electron populations 1.22900 0.76530 1.03658 1.02658 1.86176 1.23535 1.32374 1.84877 1.18149 0.87035 0.81781 0.72975 1.90778 1.66275 1.35484 1.48682 1.21760 0.94843 0.97769 1.33214 1.83030 0.92368 1.05499 1.69231 1.25502 1.05283 0.97980 1.04601 1.20926 0.95115 0.98925 1.06410 1.17369 0.91926 0.84220 0.91488 1.43981 1.13500 1.02962 1.69257 1.21555 0.87314 0.86338 0.74221 1.90460 1.14522 1.85349 1.45618 1.21947 0.95717 0.88776 1.02929 1.62154 1.20203 1.08219 1.33451 1.22390 0.98093 1.01324 0.90171 1.19393 0.94349 0.82555 0.93173 0.94161 1.22443 0.98064 1.03330 0.99565 1.21077 0.93261 0.94822 1.44354 0.91758 1.24921 0.95649 0.98119 0.95639 1.69880 1.17384 1.17557 1.48732 0.86492 0.82218 0.80529 0.78159 1.20815 1.19787 1.21316 0.92021 0.91956 0.88027 0.80653 0.79154 0.73151 0.92052 0.87753 0.96645 0.92279 0.90745 0.94708 0.89092 0.97497 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.45 101.05 1.06 1.33 16 2 O -0.35 -3.72 10.23 -41.25 -0.42 -4.14 16 3 C 0.55 6.98 7.72 31.96 0.25 7.22 16 4 O -0.52 -7.41 14.25 -19.43 -0.28 -7.68 16 5 C -0.35 -4.36 6.28 -38.61 -0.24 -4.60 16 6 S 0.23 2.10 22.82 -107.50 -2.45 -0.35 16 7 C -0.20 -1.85 10.90 29.10 0.32 -1.53 16 8 C -0.18 -2.31 9.09 -41.25 -0.38 -2.68 16 9 C 0.27 3.64 6.63 -84.67 -0.56 3.07 16 10 N -0.65 -9.32 5.33 -10.46 -0.06 -9.38 16 11 C 0.52 8.54 7.48 -10.99 -0.08 8.46 16 12 O -0.49 -8.98 11.11 5.55 0.06 -8.92 16 13 C 0.04 0.67 5.02 -4.98 -0.03 0.64 16 14 N -0.52 -11.16 4.44 -237.73 -1.06 -12.21 16 15 C 0.03 0.58 8.46 60.06 0.51 1.09 16 16 C 0.21 5.21 2.31 -68.86 -0.16 5.05 16 17 H 0.04 1.08 7.93 -51.93 -0.41 0.66 16 18 C -0.17 -4.11 8.22 37.16 0.31 -3.80 16 19 C -0.50 -13.56 7.97 -34.44 -0.27 -13.83 16 20 H 0.06 1.79 7.10 -52.49 -0.37 1.41 16 21 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 22 N -0.90 -25.24 11.32 55.43 0.63 -24.61 16 23 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.19 2.77 5.22 -52.54 -0.27 2.49 16 32 H 0.43 5.80 6.26 -40.82 -0.26 5.55 16 33 H 0.06 1.00 7.06 -51.93 -0.37 0.64 16 34 H 0.10 1.74 7.93 -51.93 -0.41 1.33 16 35 H 0.02 0.30 6.21 -51.93 -0.32 -0.02 16 36 H 0.06 1.13 5.83 -51.93 -0.30 0.83 16 37 H 0.07 1.62 6.86 -51.93 -0.36 1.26 16 38 H 0.03 0.80 6.33 -51.93 -0.33 0.47 16 39 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 40 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -30.92 346.64 -7.65 -38.57 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.90 Total: 5.22 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 0.62 Total: 1.91 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.48 Total: -46.20 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.64 Total: -20.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.45 Total: -0.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.92 -7.65 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267911062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.279 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds