Wall clock time and date at job start Tue Mar 31 2020 14:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99989 * 2 1 4 4 H 1.48502 * 109.47549 * 240.00016 * 3 2 1 5 5 H 1.48500 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46930 * 120.00002 * 3 2 1 7 7 C 1.37875 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00474 * 175.20073 * 7 2 1 9 9 C 1.50708 * 119.99903 * 355.47570 * 7 2 1 10 10 C 1.53001 * 115.54804 * 275.00191 * 9 7 2 11 11 N 1.46494 * 109.47159 * 294.55336 * 10 9 7 12 12 C 1.34779 * 120.00059 * 184.68098 * 11 10 9 13 13 S 1.71200 * 119.99942 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00203 * 179.97438 * 12 11 10 15 15 C 1.39832 * 119.99984 * 184.34938 * 14 12 11 16 16 C 1.40014 * 119.66081 * 134.00391 * 15 14 12 17 17 C 1.35908 * 120.92197 * 179.97438 * 16 15 14 18 18 C 1.40601 * 119.90369 * 359.97438 * 17 16 15 19 19 C 1.40529 * 121.14716 * 180.02562 * 18 17 16 20 20 C 1.36097 * 119.69853 * 179.97438 * 19 18 17 21 21 C 1.39374 * 120.99762 * 359.97438 * 20 19 18 22 22 C 1.36084 * 120.96871 * 0.02562 * 21 20 19 23 23 C 1.40597 * 119.65821 * 359.97438 * 22 21 20 24 24 C 1.37707 * 119.66036 * 313.72753 * 15 14 12 25 25 C 1.52995 * 117.49966 * 129.33061 * 9 7 2 26 26 C 1.53006 * 117.49649 * 60.66933 * 9 7 2 27 27 H 0.96996 * 120.00472 * 5.00354 * 1 2 3 28 28 H 1.09004 * 109.47169 * 54.55121 * 10 9 7 29 29 H 1.09003 * 109.47082 * 174.54756 * 10 9 7 30 30 H 0.97007 * 120.00008 * 4.67366 * 11 10 9 31 31 H 0.97003 * 120.00040 * 4.34337 * 14 12 11 32 32 H 1.07998 * 119.53925 * 0.02562 * 16 15 14 33 33 H 1.07995 * 120.04976 * 179.97438 * 17 16 15 34 34 H 1.08003 * 120.15217 * 359.94221 * 19 18 17 35 35 H 1.07998 * 119.50603 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.51630 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.17230 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.24933 * 359.97438 * 24 15 14 39 39 H 1.09000 * 117.49905 * 0.02562 * 25 9 7 40 40 H 1.09000 * 117.49563 * 145.02482 * 25 9 7 41 41 H 1.08994 * 117.49562 * 214.98201 * 26 9 7 42 42 H 1.08994 * 117.50023 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0788 9 6 1.2546 -2.4972 0.1018 10 6 0.9161 -2.9539 1.5223 11 7 2.1536 -3.2538 2.2467 12 6 2.0981 -3.7662 3.4921 13 16 0.5815 -4.0659 4.2277 14 7 3.2366 -4.0426 4.1584 15 6 3.1807 -4.6580 5.4128 16 6 4.0309 -5.7341 5.6952 17 6 3.9985 -6.3506 6.9059 18 6 3.1021 -5.9076 7.8944 19 6 3.0471 -6.5257 9.1553 20 6 2.1684 -6.0724 10.0905 21 6 1.3193 -5.0012 9.8182 22 6 1.3441 -4.3779 8.6088 23 6 2.2386 -4.8182 7.6174 24 6 2.2941 -4.1958 6.3597 25 6 1.5751 -3.5797 -0.9307 26 6 0.2473 -2.8213 -1.0034 27 1 -0.4850 0.8368 -0.0733 28 1 0.3753 -2.1614 2.0396 29 1 0.2950 -3.8485 1.4780 30 1 3.0129 -3.0838 1.8300 31 1 4.0947 -3.8148 3.7677 32 1 4.7226 -6.0784 4.9406 33 1 4.6603 -7.1797 7.1084 34 1 3.6987 -7.3569 9.3810 35 1 2.1290 -6.5494 11.0587 36 1 0.6315 -4.6609 10.5782 37 1 0.6802 -3.5494 8.4114 38 1 1.6449 -3.3621 6.1362 39 1 2.3287 -3.3495 -1.6839 40 1 1.5443 -4.6173 -0.5982 41 1 -0.6562 -3.3602 -0.7185 42 1 0.1268 -2.0919 -1.8042 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797408557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:42 Heat of formation + Delta-G solvation = 87.657821 kcal Electronic energy + Delta-G solvation = -23832.411826 eV Core-core repulsion = 20483.017011 eV Total energy + Delta-G solvation = -3349.394815 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53692 -38.92317 -37.36123 -35.88284 -33.92698 -32.47047 -32.10798 -29.94067 -28.73758 -26.64257 -25.41652 -24.04598 -22.91750 -22.65450 -21.83018 -21.22086 -19.68523 -18.57164 -17.96563 -17.22175 -16.53255 -16.25254 -15.53169 -15.08498 -14.91966 -14.67587 -14.45708 -14.30495 -13.73492 -13.54173 -13.48328 -13.26666 -13.15282 -12.89290 -12.25182 -11.92702 -11.77062 -11.26915 -11.21103 -11.09212 -11.02500 -10.88794 -10.79621 -10.64833 -10.36204 -9.99324 -9.70714 -9.37889 -9.00058 -8.61734 -8.43438 -8.33281 -7.86024 -7.44250 -6.68257 -6.20668 -4.33238 0.55117 0.90494 1.74988 2.12995 2.28853 2.83869 3.03601 3.17009 3.24074 3.25102 3.86425 4.14405 4.23345 4.59711 4.80803 4.87665 5.02870 5.05838 5.14014 5.17107 5.27060 5.30931 5.34965 5.71709 5.80558 5.85039 5.96106 6.04336 6.15346 6.19277 6.28705 6.32526 6.36024 6.39541 6.48288 6.55125 6.58364 6.61047 6.86272 6.94972 6.99491 7.00938 7.20325 7.29933 7.41544 7.64737 7.71366 8.15816 8.67929 9.35553 10.85824 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.002811 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.287238 B = 9958.660292 C =10277.746955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.018 3.982 10 C 0.163 3.837 11 N -0.637 5.637 12 C 0.552 3.448 13 S -0.648 6.648 14 N -0.646 5.646 15 C 0.120 3.880 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.050 4.050 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.088 4.088 23 C -0.046 4.046 24 C -0.044 4.044 25 C -0.212 4.212 26 C -0.134 4.134 27 H 0.265 0.735 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.401 0.599 31 H 0.405 0.595 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.770 -10.347 14.102 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.017 3.983 10 C 0.040 3.960 11 N -0.258 5.258 12 C 0.191 3.809 13 S -0.518 6.518 14 N -0.274 5.274 15 C 0.026 3.974 16 C -0.130 4.130 17 C -0.131 4.131 18 C -0.050 4.050 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.107 4.107 23 C -0.048 4.048 24 C -0.068 4.068 25 C -0.250 4.250 26 C -0.172 4.172 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.238 0.762 31 H 0.242 0.758 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.382 -10.351 14.458 19.253 hybrid contribution 1.927 1.234 -0.998 2.496 sum 9.309 -9.117 13.460 18.734 Atomic orbital electron populations 1.69956 1.05854 1.27333 1.47133 1.24984 0.94845 0.99014 0.94011 0.86685 0.79709 0.83157 0.78615 1.20235 1.21044 1.20191 1.20277 0.92497 0.88568 1.53577 0.92366 1.19078 1.00197 0.93482 0.85579 1.21619 0.81752 1.00134 0.92457 1.45400 1.13354 1.55922 1.11149 1.22325 0.92036 0.81891 0.84644 1.93229 1.12618 1.74290 1.71682 1.42089 1.06790 1.60371 1.18142 1.17178 1.01230 0.95391 0.83559 1.20599 1.00076 0.94469 0.97851 1.20647 0.99322 1.00327 0.92828 1.18099 0.96454 0.95913 0.94535 1.20954 0.99450 0.99879 0.92731 1.20811 0.96269 0.97095 0.99302 1.20807 0.99736 0.96810 0.97264 1.21100 0.97245 0.99577 0.92734 1.17932 0.96825 0.96064 0.93948 1.21759 0.95591 1.00000 0.89422 1.23057 1.01008 0.95484 1.05429 1.22468 0.90844 1.01083 1.02791 0.92511 0.89179 0.91597 0.76190 0.75755 0.85966 0.85450 0.85905 0.86330 0.86165 0.85347 0.82762 0.90272 0.91642 0.91413 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.12 12.65 55.43 0.70 -22.42 16 2 C 0.08 1.95 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.51 -12.41 8.61 -34.44 -0.30 -12.70 16 8 H 0.06 1.38 7.82 -52.49 -0.41 0.97 16 9 C 0.02 0.39 1.47 -155.66 -0.23 0.16 16 10 C 0.16 3.39 4.99 -4.04 -0.02 3.37 16 11 N -0.64 -11.04 5.49 -62.03 -0.34 -11.38 16 12 C 0.55 9.43 7.83 -86.92 -0.68 8.75 16 13 S -0.65 -13.40 24.86 -107.50 -2.67 -16.07 16 14 N -0.65 -8.61 5.30 -11.42 -0.06 -8.67 16 15 C 0.12 1.64 5.91 -83.74 -0.49 1.15 16 16 C -0.11 -1.24 9.86 -39.75 -0.39 -1.63 16 17 C -0.11 -1.20 9.75 -39.53 -0.39 -1.58 16 18 C -0.05 -0.60 5.74 -106.80 -0.61 -1.21 16 19 C -0.11 -1.13 9.76 -39.49 -0.39 -1.51 16 20 C -0.12 -1.11 9.95 -39.93 -0.40 -1.51 16 21 C -0.13 -1.32 9.95 -39.93 -0.40 -1.72 16 22 C -0.09 -1.08 9.77 -39.47 -0.39 -1.47 16 23 C -0.05 -0.63 5.74 -106.84 -0.61 -1.24 16 24 C -0.04 -0.65 7.60 -38.95 -0.30 -0.95 16 25 C -0.21 -4.16 9.96 -26.69 -0.27 -4.43 16 26 C -0.13 -2.91 9.15 -26.69 -0.24 -3.16 16 27 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.09 2.18 8.13 -51.93 -0.42 1.76 16 29 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 30 H 0.40 6.19 8.36 -40.82 -0.34 5.85 16 31 H 0.40 4.07 8.84 -40.82 -0.36 3.71 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.15 2.58 6.15 -45.69 -0.28 2.30 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -29.53 366.90 -13.64 -43.16 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.58 Total: 12.91 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -6.19 Total: -17.84 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.30 Total: -42.47 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -13.40 SS G_CDS: -2.67 Total: -16.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.53 -13.64 -43.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797408557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.822 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds