Wall clock time and date at job start Tue Mar 31 2020 14:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48496 * 109.47253 * 240.00120 * 3 2 1 5 5 H 1.48502 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47116 * 119.99875 * 3 2 1 7 7 C 1.37878 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99802 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46991 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46863 * 179.97438 * 10 9 7 12 12 C 1.34782 * 119.99484 * 179.97438 * 11 10 9 13 13 O 1.21343 * 119.99998 * 0.02562 * 12 11 10 14 14 C 1.49460 * 119.99661 * 180.02562 * 12 11 10 15 15 O 1.21350 * 119.99877 * 0.02562 * 14 12 11 16 16 N 1.34769 * 119.99545 * 180.02562 * 14 12 11 17 17 C 1.46505 * 119.99738 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.47356 * 179.97438 * 17 16 14 19 19 C 1.50693 * 109.47462 * 180.02562 * 18 17 16 20 20 C 1.38238 * 119.98747 * 265.23450 * 19 18 17 21 21 C 1.38182 * 120.04926 * 180.23109 * 20 19 18 22 22 C 1.38497 * 120.02770 * 359.78734 * 21 20 19 23 23 F 1.35103 * 120.01374 * 180.02562 * 22 21 20 24 24 C 1.38397 * 119.97392 * 359.97438 * 22 21 20 25 25 C 1.38438 * 119.94948 * 0.02562 * 24 22 21 26 26 F 1.35104 * 120.01364 * 179.97438 * 25 24 22 27 27 H 0.96997 * 120.00203 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46943 * 60.00452 * 9 7 2 29 29 H 1.08993 * 109.47331 * 300.00290 * 9 7 2 30 30 H 1.09004 * 109.47023 * 60.00360 * 10 9 7 31 31 H 1.09002 * 109.46913 * 300.00208 * 10 9 7 32 32 H 0.96998 * 120.00448 * 0.02562 * 11 10 9 33 33 H 0.96993 * 120.00608 * 359.97438 * 16 14 12 34 34 H 1.09004 * 109.47006 * 60.00012 * 17 16 14 35 35 H 1.08993 * 109.47026 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.46960 * 59.99620 * 18 17 16 37 37 H 1.09007 * 109.47243 * 300.00135 * 18 17 16 38 38 H 1.08004 * 119.97328 * 359.97167 * 20 19 18 39 39 H 1.08004 * 119.98465 * 179.76793 * 21 20 19 40 40 H 1.07995 * 120.02726 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1868 -6.0980 -0.0003 13 8 3.4002 -6.0979 -0.0007 14 6 1.4395 -7.3923 -0.0003 15 8 0.2260 -7.3923 -0.0003 16 7 2.1134 -8.5594 -0.0002 17 6 1.3809 -9.8282 0.0005 18 6 2.3751 -10.9911 -0.0002 19 6 1.6217 -12.2962 -0.0002 20 6 1.3629 -12.9446 1.1930 21 6 0.6763 -14.1438 1.1940 22 6 0.2428 -14.6953 -0.0001 23 9 -0.4289 -15.8675 0.0013 24 6 0.4971 -14.0446 -1.1948 25 6 1.1850 -12.8432 -1.1948 26 9 1.4343 -12.2072 -2.3603 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 0.5428 -4.9308 0.0000 33 1 3.0833 -8.5594 -0.0005 34 1 0.7539 -9.8862 -0.8893 35 1 0.7546 -9.8857 0.8906 36 1 3.0024 -10.9333 0.8893 37 1 3.0012 -10.9335 -0.8907 38 1 1.7012 -12.5156 2.1246 39 1 0.4779 -14.6513 2.1265 40 1 0.1591 -14.4737 -2.1265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321997708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:08 Heat of formation + Delta-G solvation = -151.772656 kcal Electronic energy + Delta-G solvation = -25450.083348 eV Core-core repulsion = 21093.323647 eV Total energy + Delta-G solvation = -4356.759701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.52037 -49.49094 -40.47084 -39.59837 -38.32689 -36.01826 -35.00602 -33.06960 -32.76192 -31.39186 -29.84421 -28.89740 -25.86174 -24.49555 -23.78494 -22.89711 -21.90384 -21.04589 -20.21080 -18.74836 -18.30996 -17.81939 -17.00684 -16.56138 -16.44124 -16.28283 -16.03120 -15.85550 -15.74227 -15.27663 -15.04394 -14.84578 -14.81340 -14.46657 -14.39722 -13.90442 -13.50783 -13.26854 -12.99280 -12.87377 -12.39481 -12.32086 -12.11036 -12.06847 -11.71073 -11.52667 -11.24965 -11.05327 -10.69146 -10.39907 -9.81716 -9.65971 -9.47472 -9.42234 -9.25729 -9.15010 -8.71056 -8.42205 -6.10479 -4.14362 0.33017 0.42474 1.58608 2.45193 2.77517 3.30275 3.30628 3.34560 3.37146 3.40499 3.75980 3.84521 3.97552 4.14343 4.27358 4.39667 4.44750 4.50147 4.71890 4.75253 5.00449 5.17334 5.24217 5.26275 5.33915 5.36219 5.46341 5.54522 5.68598 6.03182 6.16762 6.17648 6.22678 6.57902 6.67948 6.99814 7.45286 7.57059 7.63931 7.86422 7.89789 8.19954 8.32372 8.90964 9.50510 11.00916 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.038425 B = 0.001624 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.516807 B =17238.298106 C =17346.402918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.686 5.686 12 C 0.498 3.502 13 O -0.534 6.534 14 C 0.508 3.492 15 O -0.518 6.518 16 N -0.707 5.707 17 C 0.123 3.877 18 C -0.093 4.093 19 C -0.125 4.125 20 C -0.054 4.054 21 C -0.161 4.161 22 C 0.129 3.871 23 F -0.131 7.131 24 C -0.191 4.191 25 C 0.137 3.863 26 F -0.125 7.125 27 H 0.263 0.737 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 -31.575 1.336 31.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.277 3.723 13 O -0.412 6.412 14 C 0.289 3.711 15 O -0.393 6.393 16 N -0.361 5.361 17 C -0.001 4.001 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.072 4.072 21 C -0.180 4.180 22 C 0.109 3.891 23 F -0.110 7.110 24 C -0.210 4.210 25 C 0.118 3.882 26 F -0.103 7.103 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.212 -31.433 1.285 31.536 hybrid contribution 0.233 0.702 -0.294 0.796 sum 2.445 -30.730 0.990 30.843 Atomic orbital electron populations 1.69945 1.06095 1.27078 1.49921 1.25001 0.94902 0.99435 0.94912 0.86550 0.79489 0.82599 0.78752 1.20102 1.21230 1.20112 1.20973 0.93186 0.90248 1.51916 0.92208 1.19358 0.94194 0.90858 0.98268 1.21945 0.96281 0.80731 1.01353 1.46241 1.11814 1.05798 1.69784 1.19946 0.87695 0.85222 0.79434 1.90727 1.13206 1.87528 1.49726 1.20468 0.87734 0.85542 0.77322 1.90767 1.13460 1.87652 1.47437 1.45688 1.11462 1.04799 1.74177 1.21389 0.94315 0.80959 1.03424 1.20730 0.97478 0.89701 1.05118 1.19770 1.02521 0.98336 0.92043 1.20864 0.95434 0.93263 0.97624 1.21245 1.01573 0.97624 0.97572 1.17338 0.94989 0.82980 0.93788 1.91549 1.77532 1.44560 1.97320 1.21059 1.04314 0.96354 0.99303 1.17165 0.98203 0.91354 0.81507 1.91563 1.91940 1.80951 1.45886 0.92707 0.95639 0.95652 0.91835 0.91830 0.75361 0.75017 0.90771 0.90528 0.88939 0.89273 0.83517 0.83757 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 11 N -0.69 -12.35 5.55 -60.72 -0.34 -12.69 16 12 C 0.50 8.38 7.89 -11.58 -0.09 8.29 16 13 O -0.53 -9.83 16.48 5.50 0.09 -9.74 16 14 C 0.51 7.38 7.89 -11.58 -0.09 7.29 16 15 O -0.52 -8.64 16.48 5.50 0.09 -8.55 16 16 N -0.71 -7.49 5.55 -60.73 -0.34 -7.83 16 17 C 0.12 1.04 5.66 -4.04 -0.02 1.01 16 18 C -0.09 -0.53 5.23 -27.89 -0.15 -0.67 16 19 C -0.13 -0.76 5.14 -104.55 -0.54 -1.29 16 20 C -0.05 -0.25 9.68 -39.60 -0.38 -0.63 16 21 C -0.16 -0.81 10.02 -39.51 -0.40 -1.21 16 22 C 0.13 0.84 7.30 -39.43 -0.29 0.55 16 23 F -0.13 -0.98 17.27 2.25 0.04 -0.94 16 24 C -0.19 -1.27 10.01 -39.45 -0.39 -1.66 16 25 C 0.14 1.00 7.24 -39.43 -0.29 0.71 16 26 F -0.13 -1.08 16.56 2.25 0.04 -1.04 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.41 7.07 7.94 -40.82 -0.32 6.75 16 33 H 0.41 3.78 7.94 -40.82 -0.32 3.45 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.36 8.05 -51.93 -0.42 -0.06 16 37 H 0.09 0.51 7.79 -51.93 -0.40 0.10 16 38 H 0.15 0.35 8.06 -52.48 -0.42 -0.07 16 39 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 40 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -32.09 364.16 -7.24 -39.33 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.82 Total: 3.24 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.21 Total: 1.83 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.06 Total: -45.79 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.18 Total: -18.28 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.08 Total: -1.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.09 -7.24 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321997708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.443 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds