Wall clock time and date at job start Tue Mar 31 2020 14:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00146 * 2 1 4 4 H 1.48503 * 109.47168 * 269.99529 * 3 2 1 5 5 H 1.48501 * 109.47602 * 30.00069 * 3 2 1 6 6 H 1.48506 * 109.47111 * 149.99769 * 3 2 1 7 7 C 1.37877 * 119.99344 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00453 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99640 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47096 * 178.21228 * 9 7 2 11 11 C 1.46901 * 110.99929 * 202.32942 * 10 9 7 12 12 C 1.50703 * 109.47283 * 66.04508 * 11 10 9 13 13 C 1.38228 * 119.62072 * 94.99610 * 12 11 10 14 14 C 1.38620 * 119.16381 * 179.97438 * 13 12 11 15 15 C 1.38678 * 118.41990 * 0.02562 * 14 13 12 16 16 C 1.38184 * 119.16156 * 359.97438 * 15 14 13 17 17 N 1.31856 * 119.61738 * 274.73138 * 12 11 10 18 18 C 1.46896 * 111.00110 * 78.37735 * 10 9 7 19 19 C 1.53001 * 109.46760 * 207.27553 * 18 10 9 20 20 H 1.08999 * 115.55296 * 54.09925 * 19 18 10 21 21 C 1.53002 * 117.51625 * 199.79724 * 19 18 10 22 22 H 1.08997 * 117.50236 * 214.97212 * 21 19 18 23 23 C 1.50700 * 117.49875 * 359.97438 * 21 19 18 24 24 O 1.20826 * 120.00229 * 0.02562 * 23 21 19 25 25 O 1.34227 * 120.00129 * 179.97438 * 23 21 19 26 26 C 1.52998 * 60.00254 * 107.48079 * 21 19 18 27 27 F 1.39893 * 117.50040 * 252.51410 * 26 21 19 28 28 F 1.39897 * 117.51762 * 107.47833 * 26 21 19 29 29 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47316 * 58.21097 * 9 7 2 31 31 H 1.09005 * 109.47694 * 298.20870 * 9 7 2 32 32 H 1.09003 * 109.47106 * 186.04077 * 11 10 9 33 33 H 1.09001 * 109.47355 * 306.04592 * 11 10 9 34 34 H 1.08006 * 120.41472 * 0.02562 * 13 12 11 35 35 H 1.08001 * 120.79106 * 180.02562 * 14 13 12 36 36 H 1.08004 * 120.41668 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.61460 * 180.02562 * 16 15 14 38 38 H 1.09004 * 109.47402 * 87.27386 * 18 10 9 39 39 H 1.08997 * 109.47276 * 327.27297 * 18 10 9 40 40 H 0.96700 * 117.00362 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 4.0010 -2.5785 0.0448 11 6 5.3723 -2.6357 0.5685 12 6 5.3765 -2.2081 2.0136 13 6 5.3061 -3.1644 3.0092 14 6 5.3112 -2.7606 4.3353 15 6 5.3866 -1.4037 4.6117 16 6 5.4543 -0.5057 3.5636 17 7 5.4525 -0.9264 2.3137 18 6 3.9165 -3.2089 -1.2793 19 6 3.7626 -4.7222 -1.1148 20 1 2.9377 -5.0446 -0.4793 21 6 4.1161 -5.6033 -2.3147 22 1 3.5238 -6.5053 -2.4686 23 6 4.5887 -4.9141 -3.5687 24 8 4.6770 -3.7095 -3.5995 25 8 4.9127 -5.6386 -4.6513 26 6 5.0400 -5.5643 -1.0957 27 9 6.2591 -4.8916 -1.2305 28 9 5.0600 -6.6887 -0.2636 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6527 0.8746 31 1 3.8752 -0.7087 -0.9045 32 1 5.7489 -3.6556 0.4903 33 1 6.0103 -1.9674 -0.0100 34 1 5.2488 -4.2130 2.7570 35 1 5.2577 -3.4854 5.1341 36 1 5.3932 -1.0534 5.6333 37 1 5.5136 0.5526 3.7705 38 1 4.8251 -2.9951 -1.8422 39 1 3.0547 -2.8124 -1.8162 40 1 5.2110 -5.1522 -5.4319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:56 Heat of formation + Delta-G solvation = -94.193591 kcal Electronic energy + Delta-G solvation = -28514.634731 eV Core-core repulsion = 24160.371846 eV Total energy + Delta-G solvation = -4354.262885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.87388 -47.52460 -40.58615 -39.88501 -37.62363 -36.24068 -35.39011 -32.52288 -32.12581 -31.34084 -28.27004 -27.28096 -25.42681 -24.04634 -23.17753 -21.88271 -21.58611 -20.60356 -20.04275 -18.55762 -17.76856 -17.14125 -16.79712 -16.62971 -16.23412 -15.94382 -15.88883 -15.31499 -15.14032 -14.70808 -14.57509 -14.14012 -13.81678 -13.79469 -13.67440 -13.35595 -13.19071 -12.93658 -12.83339 -12.36016 -12.24760 -11.93479 -11.87724 -11.62244 -11.38249 -11.32951 -10.95671 -10.65082 -10.36366 -10.17165 -9.85503 -9.74889 -9.53327 -9.29853 -8.92072 -8.67543 -8.46613 -7.41207 -5.97341 -3.92706 1.43518 1.61001 1.66473 2.58849 2.94858 3.05950 3.37221 3.43941 3.54205 3.79325 4.12047 4.38839 4.41538 4.52774 4.65320 4.93398 5.00141 5.08961 5.13031 5.34107 5.34618 5.37016 5.43931 5.44465 5.67873 5.75053 5.86731 5.99335 6.09049 6.14502 6.32921 6.43138 6.48126 6.63621 6.98573 7.00209 7.07857 7.69365 7.76075 7.88432 8.00849 8.40224 8.72343 9.10869 9.66023 11.15732 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.005512 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.380862 B = 5078.790728 C = 7125.695899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.865 3.135 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.502 4.502 8 H 0.078 0.922 9 C 0.152 3.848 10 N -0.520 5.520 11 C 0.097 3.903 12 C 0.153 3.847 13 C -0.155 4.155 14 C -0.079 4.079 15 C -0.183 4.183 16 C 0.100 3.900 17 N -0.471 5.471 18 C 0.078 3.922 19 C -0.081 4.081 20 H 0.153 0.847 21 C -0.173 4.173 22 H 0.160 0.840 23 C 0.507 3.493 24 O -0.481 6.481 25 O -0.512 6.512 26 C 0.220 3.780 27 F -0.151 7.151 28 F -0.151 7.151 29 H 0.261 0.739 30 H 0.057 0.943 31 H -0.013 1.013 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.263 -12.114 -0.202 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.132 4.132 3 Si 0.692 3.308 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.540 4.540 8 H 0.096 0.904 9 C 0.026 3.974 10 N -0.245 5.245 11 C -0.032 4.032 12 C 0.015 3.985 13 C -0.175 4.175 14 C -0.105 4.105 15 C -0.203 4.203 16 C -0.057 4.057 17 N -0.181 5.181 18 C -0.050 4.050 19 C -0.101 4.101 20 H 0.171 0.829 21 C -0.193 4.193 22 H 0.178 0.822 23 C 0.348 3.652 24 O -0.366 6.366 25 O -0.325 6.325 26 C 0.183 3.817 27 F -0.131 7.131 28 F -0.132 7.132 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.005 0.995 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.167 0.833 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 11.806 -11.512 -0.205 16.491 hybrid contribution 1.023 0.824 -0.267 1.340 sum 12.829 -10.688 -0.472 16.704 Atomic orbital electron populations 1.69900 1.06095 1.26642 1.51739 1.24839 0.94663 0.98751 0.94978 0.86982 0.81084 0.84106 0.78626 1.20464 1.21432 1.18065 1.21028 0.88813 0.94506 1.49689 0.90355 1.20464 0.96767 0.83415 0.96762 1.61846 1.17305 1.22022 1.23289 1.21084 0.92241 1.00107 0.89757 1.21104 0.92832 0.88404 0.96137 1.21860 1.01641 1.00891 0.93154 1.21483 0.96429 0.95981 0.96595 1.22031 1.03482 0.94280 1.00508 1.22687 0.95185 1.00068 0.87807 1.67526 1.11328 1.17479 1.21770 1.21978 1.04502 0.87559 0.90949 1.24128 0.95199 0.96792 0.93992 0.82945 1.23354 1.03570 1.05130 0.87273 0.82215 1.21851 0.74085 0.85401 0.83846 1.90807 1.48097 1.15174 1.82557 1.84463 1.78455 1.45223 1.24348 1.19938 0.81923 0.86014 0.93854 1.93033 1.45387 1.79016 1.95677 1.93057 1.96720 1.51465 1.71936 0.92878 0.92548 0.99550 0.90378 0.93707 0.85136 0.85287 0.85338 0.83292 0.91415 0.87517 0.72568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.86 22.33 27.50 -169.99 -4.68 17.65 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.51 6.49 56.52 0.37 -6.15 16 7 C -0.50 -14.39 9.24 -34.44 -0.32 -14.71 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.15 3.79 3.61 -4.98 -0.02 3.77 16 10 N -0.52 -10.79 4.28 -237.51 -1.02 -11.80 16 11 C 0.10 1.77 4.99 -4.97 -0.02 1.75 16 12 C 0.15 2.81 5.78 -82.58 -0.48 2.33 16 13 C -0.16 -2.39 9.72 -39.44 -0.38 -2.78 16 14 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 15 C -0.18 -2.48 10.11 -39.44 -0.40 -2.88 16 16 C 0.10 1.61 11.18 -17.55 -0.20 1.42 16 17 N -0.47 -9.18 8.41 -9.47 -0.08 -9.26 16 18 C 0.08 1.43 3.44 -3.83 -0.01 1.42 16 19 C -0.08 -1.15 5.78 -90.62 -0.52 -1.67 16 20 H 0.15 2.03 8.14 -51.93 -0.42 1.61 16 21 C -0.17 -1.98 6.28 -91.77 -0.58 -2.55 16 22 H 0.16 1.32 8.14 -51.93 -0.42 0.90 16 23 C 0.51 6.30 7.72 36.01 0.28 6.57 16 24 O -0.48 -7.59 13.82 -18.75 -0.26 -7.84 16 25 O -0.51 -4.69 13.42 -39.25 -0.53 -5.22 16 26 C 0.22 2.84 4.42 -26.73 -0.12 2.72 16 27 F -0.15 -2.17 14.59 2.25 0.03 -2.14 16 28 F -0.15 -1.89 17.60 2.25 0.04 -1.85 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.06 1.46 4.38 -51.93 -0.23 1.24 16 31 H -0.01 -0.34 7.48 -51.93 -0.39 -0.73 16 32 H 0.08 1.26 5.24 -51.93 -0.27 0.99 16 33 H 0.04 0.86 8.12 -51.93 -0.42 0.43 16 34 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.07 1.27 4.97 -51.93 -0.26 1.01 16 39 H 0.11 2.24 7.35 -51.93 -0.38 1.86 16 40 H 0.41 2.04 9.10 45.56 0.41 2.46 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -35.30 343.77 -7.46 -42.77 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.66 Total: 3.97 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -3.27 Total: -4.14 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.32 Total: -48.38 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.79 Total: -13.06 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.07 Total: -3.99 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.68 Total: 17.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.30 -7.46 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.428 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds