Wall clock time and date at job start Tue Mar 31 2020 14:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00146 * 2 1 4 4 H 1.48503 * 109.47168 * 269.99529 * 3 2 1 5 5 H 1.48501 * 109.47602 * 30.00069 * 3 2 1 6 6 H 1.48506 * 109.47111 * 149.99769 * 3 2 1 7 7 C 1.37877 * 119.99344 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00453 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99640 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47096 * 178.21228 * 9 7 2 11 11 C 1.46901 * 110.99929 * 202.32942 * 10 9 7 12 12 C 1.50703 * 109.47283 * 66.04508 * 11 10 9 13 13 C 1.38228 * 119.62072 * 94.99610 * 12 11 10 14 14 C 1.38620 * 119.16381 * 179.97438 * 13 12 11 15 15 C 1.38678 * 118.41990 * 0.02562 * 14 13 12 16 16 C 1.38184 * 119.16156 * 359.97438 * 15 14 13 17 17 N 1.31856 * 119.61738 * 274.73138 * 12 11 10 18 18 C 1.46896 * 111.00110 * 78.37735 * 10 9 7 19 19 C 1.53001 * 109.46760 * 207.27553 * 18 10 9 20 20 H 1.08999 * 115.55296 * 54.09925 * 19 18 10 21 21 C 1.53002 * 117.51625 * 199.79724 * 19 18 10 22 22 H 1.08997 * 117.50236 * 214.97212 * 21 19 18 23 23 C 1.50700 * 117.49875 * 359.97438 * 21 19 18 24 24 O 1.20826 * 120.00229 * 0.02562 * 23 21 19 25 25 O 1.34227 * 120.00129 * 179.97438 * 23 21 19 26 26 C 1.52998 * 60.00254 * 107.48079 * 21 19 18 27 27 F 1.39893 * 117.50040 * 252.51410 * 26 21 19 28 28 F 1.39897 * 117.51762 * 107.47833 * 26 21 19 29 29 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47316 * 58.21097 * 9 7 2 31 31 H 1.09005 * 109.47694 * 298.20870 * 9 7 2 32 32 H 1.09003 * 109.47106 * 186.04077 * 11 10 9 33 33 H 1.09001 * 109.47355 * 306.04592 * 11 10 9 34 34 H 1.08006 * 120.41472 * 0.02562 * 13 12 11 35 35 H 1.08001 * 120.79106 * 180.02562 * 14 13 12 36 36 H 1.08004 * 120.41668 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.61460 * 180.02562 * 16 15 14 38 38 H 1.09004 * 109.47402 * 87.27386 * 18 10 9 39 39 H 1.08997 * 109.47276 * 327.27297 * 18 10 9 40 40 H 0.96700 * 117.00362 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 4.0010 -2.5785 0.0448 11 6 5.3723 -2.6357 0.5685 12 6 5.3765 -2.2081 2.0136 13 6 5.3061 -3.1644 3.0092 14 6 5.3112 -2.7606 4.3353 15 6 5.3866 -1.4037 4.6117 16 6 5.4543 -0.5057 3.5636 17 7 5.4525 -0.9264 2.3137 18 6 3.9165 -3.2089 -1.2793 19 6 3.7626 -4.7222 -1.1148 20 1 2.9377 -5.0446 -0.4793 21 6 4.1161 -5.6033 -2.3147 22 1 3.5238 -6.5053 -2.4686 23 6 4.5887 -4.9141 -3.5687 24 8 4.6770 -3.7095 -3.5995 25 8 4.9127 -5.6386 -4.6513 26 6 5.0400 -5.5643 -1.0957 27 9 6.2591 -4.8916 -1.2305 28 9 5.0600 -6.6887 -0.2636 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6527 0.8746 31 1 3.8752 -0.7087 -0.9045 32 1 5.7489 -3.6556 0.4903 33 1 6.0103 -1.9674 -0.0100 34 1 5.2488 -4.2130 2.7570 35 1 5.2577 -3.4854 5.1341 36 1 5.3932 -1.0534 5.6333 37 1 5.5136 0.5526 3.7705 38 1 4.8251 -2.9951 -1.8422 39 1 3.0547 -2.8124 -1.8162 40 1 5.2110 -5.1522 -5.4319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:55 Heat of formation + Delta-G solvation = -119.449179 kcal Electronic energy + Delta-G solvation = -28515.729895 eV Core-core repulsion = 24160.371846 eV Total energy + Delta-G solvation = -4355.358049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93591 -48.57660 -41.60987 -41.10046 -38.89296 -37.36581 -36.59924 -34.67488 -33.31586 -32.69966 -30.19101 -28.60668 -26.61258 -25.58671 -24.34843 -23.44395 -22.70486 -21.82155 -21.49445 -19.56387 -19.01343 -18.71515 -18.20327 -17.83111 -17.34232 -17.14587 -17.01749 -16.62830 -16.34672 -16.28460 -16.00306 -15.52804 -15.22363 -14.94670 -14.77859 -14.62444 -14.44788 -14.40403 -14.06123 -14.03837 -13.63392 -13.46339 -13.22155 -13.13271 -12.69428 -12.58916 -12.44724 -12.32520 -11.89359 -11.80571 -11.62065 -11.38021 -11.01994 -10.80482 -10.67096 -10.23214 -9.88099 -9.08860 -8.27780 -6.26920 0.24936 0.47539 0.65450 1.29852 1.31582 1.47100 1.68037 1.90604 2.02644 2.34423 2.60630 2.94280 3.07119 3.33263 3.37563 3.43618 3.63969 3.82492 4.07776 4.10731 4.16405 4.24387 4.32498 4.41982 4.45233 4.49568 4.57132 4.73198 4.80817 4.89992 4.93786 5.09184 5.14960 5.31424 5.33173 5.54337 5.61520 5.89040 5.94160 6.29758 6.58028 6.76890 6.86773 7.18178 7.35272 8.88368 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.005512 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.380862 B = 5078.790728 C = 7125.695899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.015 3.985 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.501 4.501 8 H 0.046 0.954 9 C 0.166 3.834 10 N -0.526 5.526 11 C 0.105 3.895 12 C 0.117 3.883 13 C -0.160 4.160 14 C -0.075 4.075 15 C -0.171 4.171 16 C 0.075 3.925 17 N -0.516 5.516 18 C 0.086 3.914 19 C -0.100 4.100 20 H 0.161 0.839 21 C -0.147 4.147 22 H 0.202 0.798 23 C 0.510 3.490 24 O -0.522 6.522 25 O -0.498 6.498 26 C 0.227 3.773 27 F -0.161 7.161 28 F -0.144 7.144 29 H 0.265 0.735 30 H 0.052 0.948 31 H -0.029 1.029 32 H 0.099 0.901 33 H 0.028 0.972 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.535 -13.652 0.977 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.182 4.182 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.039 3.961 10 N -0.250 5.250 11 C -0.024 4.024 12 C -0.020 4.020 13 C -0.180 4.180 14 C -0.101 4.101 15 C -0.191 4.191 16 C -0.082 4.082 17 N -0.227 5.227 18 C -0.042 4.042 19 C -0.120 4.120 20 H 0.178 0.822 21 C -0.167 4.167 22 H 0.219 0.781 23 C 0.352 3.648 24 O -0.411 6.411 25 O -0.312 6.312 26 C 0.190 3.810 27 F -0.141 7.141 28 F -0.124 7.124 29 H 0.074 0.926 30 H 0.070 0.930 31 H -0.011 1.011 32 H 0.117 0.883 33 H 0.046 0.954 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.185 0.815 37 H 0.182 0.818 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 13.101 -13.088 0.946 18.543 hybrid contribution 0.649 1.200 -0.631 1.503 sum 13.750 -11.888 0.314 18.179 Atomic orbital electron populations 1.70023 1.07602 1.27704 1.53275 1.25615 0.95443 1.02300 0.94871 0.85986 0.79894 0.79996 0.78903 1.19883 1.20381 1.17656 1.21231 0.90748 0.93278 1.48701 0.93597 1.20125 0.94312 0.86095 0.95608 1.61781 1.19225 1.19333 1.24648 1.21059 0.90210 1.00868 0.90226 1.21161 0.95364 0.89053 0.96387 1.22113 1.00968 1.01244 0.93656 1.21990 0.94549 0.96861 0.96683 1.22457 1.00948 0.94052 1.01611 1.23126 0.95776 1.01591 0.87666 1.67394 1.12960 1.18424 1.23893 1.21769 1.02621 0.90381 0.89419 1.23871 0.96812 0.94242 0.97066 0.82184 1.23492 1.02195 1.05070 0.85976 0.78132 1.21999 0.73236 0.84867 0.84679 1.90809 1.49903 1.17036 1.83400 1.84418 1.77656 1.44727 1.24401 1.19787 0.80909 0.85601 0.94705 1.93018 1.45941 1.79383 1.95752 1.93077 1.96623 1.50788 1.71913 0.92618 0.92969 1.01133 0.88309 0.95410 0.83350 0.81259 0.81509 0.81823 0.91863 0.91132 0.70270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.01 0.90 5.47 84.65 0.46 1.37 16 3 Si 0.93 47.23 27.50 68.60 1.89 49.12 16 4 H -0.27 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.25 -12.62 6.49 99.48 0.65 -11.97 16 7 C -0.50 -29.94 9.24 25.60 0.24 -29.70 16 8 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 9 C 0.17 8.60 3.61 85.56 0.31 8.91 16 10 N -0.53 -22.58 4.28 -905.35 -3.88 -26.46 16 11 C 0.10 3.92 4.99 85.56 0.43 4.34 16 12 C 0.12 4.31 5.78 42.55 0.25 4.56 16 13 C -0.16 -4.65 9.72 22.36 0.22 -4.44 16 14 C -0.08 -1.77 10.18 22.47 0.23 -1.54 16 15 C -0.17 -4.13 10.11 22.36 0.23 -3.91 16 16 C 0.08 2.35 11.18 84.67 0.95 3.30 16 17 N -0.52 -20.23 8.41 -183.88 -1.55 -21.78 16 18 C 0.09 3.28 3.44 86.30 0.30 3.58 16 19 C -0.10 -2.80 5.78 -10.79 -0.06 -2.86 16 20 H 0.16 4.19 8.14 -2.39 -0.02 4.17 16 21 C -0.15 -3.08 6.28 -11.54 -0.07 -3.15 16 22 H 0.20 2.54 8.14 -2.39 -0.02 2.52 16 23 C 0.51 12.01 7.72 71.24 0.55 12.56 16 24 O -0.52 -16.70 13.82 21.96 0.30 -16.40 16 25 O -0.50 -7.91 13.42 -51.39 -0.69 -8.60 16 26 C 0.23 5.49 4.42 30.60 0.14 5.63 16 27 F -0.16 -4.46 14.59 44.97 0.66 -3.80 16 28 F -0.14 -3.22 17.60 44.97 0.79 -2.42 16 29 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.05 2.79 4.38 -2.39 -0.01 2.78 16 31 H -0.03 -1.57 7.48 -2.38 -0.02 -1.59 16 32 H 0.10 3.18 5.24 -2.39 -0.01 3.17 16 33 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.06 2.48 4.97 -2.39 -0.01 2.47 16 39 H 0.07 3.17 7.35 -2.39 -0.02 3.16 16 40 H 0.43 3.33 9.10 -74.06 -0.67 2.65 16 Total: -1.00 -80.23 343.77 2.34 -77.89 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.37 Total: 13.78 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 4.15 Total: -1.36 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -5.13 Total: -108.21 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.39 Total: -25.00 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 1.45 Total: -6.23 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.89 Total: 49.12 kcal Total: -80.23 2.34 -77.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.557 kcal (2) G-P(sol) polarization free energy of solvation -80.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds