Wall clock time and date at job start Tue Mar 31 2020 17:12:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46505 * 109.47304 * 2 1
4 4 N 1.39921 * 125.74742 * 269.97910 * 3 2 1
5 5 C 1.30415 * 108.95799 * 179.75646 * 4 3 2
6 6 C 1.50703 * 125.97816 * 180.24531 * 5 4 3
7 7 C 1.41342 * 108.04854 * 0.40312 * 5 4 3
8 8 C 1.47301 * 126.43856 * 179.85365 * 7 5 4
9 9 O 1.21614 * 120.00117 * 269.72240 * 8 7 5
10 10 N 1.34775 * 119.99700 * 89.71363 * 8 7 5
11 11 C 1.46966 * 120.59166 * 180.02562 * 10 8 7
12 12 C 1.53376 * 108.63466 * 235.20485 * 11 10 8
13 13 N 1.46968 * 108.63457 * 310.57917 * 12 11 10
14 14 C 1.36937 * 120.59055 * 235.20386 * 13 12 11
15 15 H 1.07997 * 120.00034 * 28.27851 * 14 13 12
16 16 C 1.38806 * 119.99615 * 208.56371 * 14 13 12
17 17 N 1.31620 * 120.00437 * 17.30811 * 16 14 13
18 18 Si 1.86800 * 119.99904 * 197.31053 * 16 14 13
19 19 H 1.48502 * 109.47086 * 359.97438 * 18 16 14
20 20 H 1.48503 * 109.47060 * 119.99742 * 18 16 14
21 21 H 1.48496 * 109.47229 * 239.99810 * 18 16 14
22 22 C 1.46960 * 118.81400 * 55.47579 * 13 12 11
23 23 C 1.46965 * 120.59702 * 359.97438 * 10 8 7
24 24 C 1.34346 * 125.74669 * 89.99940 * 3 2 1
25 25 Cl 1.73596 * 126.32304 * 359.97438 * 24 3 2
26 26 H 1.09004 * 109.46915 * 300.00426 * 1 2 3
27 27 H 1.08993 * 109.46980 * 60.00022 * 1 2 3
28 28 H 1.08996 * 109.46926 * 180.02562 * 1 2 3
29 29 H 1.08996 * 109.47155 * 239.99850 * 2 1 3
30 30 H 1.08998 * 109.47404 * 120.00077 * 2 1 3
31 31 H 1.08996 * 109.46726 * 270.19315 * 6 5 4
32 32 H 1.08995 * 109.47051 * 30.18864 * 6 5 4
33 33 H 1.09000 * 109.47318 * 150.19025 * 6 5 4
34 34 H 1.08997 * 109.60957 * 115.46314 * 11 10 8
35 35 H 1.08992 * 109.61068 * 354.95221 * 11 10 8
36 36 H 1.08998 * 109.60957 * 190.83139 * 12 11 10
37 37 H 1.09001 * 109.60896 * 70.31950 * 12 11 10
38 38 H 0.96998 * 120.00790 * 179.97438 * 17 16 14
39 39 H 1.09011 * 109.61027 * 64.26353 * 22 13 12
40 40 H 1.09000 * 109.60956 * 184.77581 * 22 13 12
41 41 H 1.08998 * 109.61178 * 244.54238 * 23 10 8
42 42 H 1.09005 * 109.60650 * 4.87678 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 7 2.2913 2.1518 -1.1356
5 6 2.7025 3.3307 -0.7589
6 6 3.0961 4.4642 -1.6707
7 6 2.7178 3.3582 0.6542
8 6 3.1189 4.4935 1.5028
9 8 4.2775 4.6111 1.8533
10 7 2.2020 5.4018 1.8907
11 6 2.5879 6.5397 2.7369
12 6 1.7032 6.5410 3.9898
13 7 0.2996 6.4115 3.5738
14 6 -0.6320 7.3344 3.9680
15 1 -0.3317 8.3515 4.1723
16 6 -1.9613 6.9612 4.1108
17 7 -2.2809 5.6879 4.2057
18 14 -3.2968 8.2661 4.1680
19 1 -2.6802 9.6112 4.0424
20 1 -4.2479 8.0504 3.0482
21 1 -4.0238 8.1740 5.4596
22 6 -0.0873 5.2705 2.7323
23 6 0.7985 5.2727 1.4742
24 6 2.2800 2.1212 1.0904
25 17 2.1013 1.6176 2.7420
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0276 0.0005
29 1 1.8933 -0.5138 -0.8899
30 1 1.8934 -0.5138 0.8899
31 1 4.1607 4.3974 -1.8946
32 1 2.5254 4.4002 -2.5971
33 1 2.8868 5.4147 -1.1800
34 1 2.4444 7.4698 2.1869
35 1 3.6337 6.4414 3.0276
36 1 1.8391 7.4764 4.5327
37 1 1.9741 5.7011 4.6297
38 1 -3.2098 5.4271 4.3058
39 1 0.0591 4.3422 3.2847
40 1 -1.1342 5.3667 2.4445
41 1 0.5280 6.1128 0.8345
42 1 0.6633 4.3390 0.9283
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000073099787.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:12:02
Heat of formation + Delta-G solvation = 65.499055 kcal
Electronic energy + Delta-G solvation = -26647.355821 eV
Core-core repulsion = 22884.107160 eV
Total energy + Delta-G solvation = -3763.248661 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.125 amu
Computer time = 6.15 seconds
Orbital eigenvalues (eV)
-41.54892 -39.17370 -36.97258 -36.67672 -35.04470 -33.78508 -31.51575 -31.48616
-30.33011 -29.73758 -27.85281 -26.86349 -24.35855 -23.39085 -22.79011 -21.85932
-20.65293 -19.98490 -18.72786 -17.57859 -16.79533 -16.08608 -15.66346 -15.46034
-15.06558 -14.72557 -14.53073 -14.22714 -13.65192 -13.55906 -13.42091 -13.33671
-13.19732 -13.06277 -12.70869 -12.49215 -12.39172 -12.19392 -11.83373 -11.71435
-11.59549 -11.50429 -11.32482 -10.85435 -10.75907 -10.71340 -10.47979 -10.21694
-10.00302 -9.83889 -9.51857 -9.31423 -8.61027 -8.54866 -8.20878 -6.70089
-5.85241 -3.29290 1.30441 1.42280 2.31975 2.39451 2.89711 3.33260
3.41796 3.43685 3.57527 4.18358 4.44750 4.61663 4.68428 4.88596
4.92139 5.04109 5.29554 5.31512 5.37547 5.38546 5.44103 5.54357
5.71417 5.77941 5.84095 5.85351 5.90693 5.99367 6.18126 6.21482
6.31190 6.40211 6.47126 6.51102 6.81103 6.96338 7.24619 7.39951
7.48003 7.73060 7.93688 8.36290 8.59174 9.12643 9.75401 10.32726
11.22317
Molecular weight = 326.13amu
Principal moments of inertia in cm(-1)
A = 0.013858 B = 0.004410 C = 0.003976
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.988270 B = 6348.311806 C = 7040.726785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.123 3.877
3 N -0.352 5.352
4 N -0.276 5.276
5 C 0.116 3.884
6 C -0.075 4.075
7 C -0.244 4.244
8 C 0.591 3.409
9 O -0.549 6.549
10 N -0.584 5.584
11 C 0.096 3.904
12 C 0.132 3.868
13 N -0.591 5.591
14 C -0.253 4.253
15 H 0.068 0.932
16 C 0.003 3.997
17 N -0.902 5.902
18 Si 0.902 3.098
19 H -0.277 1.277
20 H -0.289 1.289
21 H -0.290 1.290
22 C 0.161 3.839
23 C 0.085 3.915
24 C 0.158 3.842
25 Cl 0.016 6.984
26 H 0.067 0.933
27 H 0.069 0.931
28 H 0.080 0.920
29 H 0.102 0.898
30 H 0.096 0.904
31 H 0.083 0.917
32 H 0.080 0.920
33 H 0.081 0.919
34 H 0.064 0.936
35 H 0.083 0.917
36 H 0.067 0.933
37 H 0.024 0.976
38 H 0.254 0.746
39 H 0.024 0.976
40 H 0.098 0.902
41 H 0.063 0.937
42 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.994 -9.906 -10.043 15.745
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.002 3.998
3 N -0.135 5.135
4 N -0.099 5.099
5 C -0.050 4.050
6 C -0.134 4.134
7 C -0.260 4.260
8 C 0.377 3.623
9 O -0.427 6.427
10 N -0.315 5.315
11 C -0.028 4.028
12 C 0.004 3.996
13 N -0.313 5.313
14 C -0.382 4.382
15 H 0.086 0.914
16 C -0.195 4.195
17 N -0.547 5.547
18 Si 0.732 3.268
19 H -0.202 1.202
20 H -0.215 1.215
21 H -0.217 1.217
22 C 0.034 3.966
23 C -0.039 4.039
24 C 0.002 3.998
25 Cl 0.044 6.956
26 H 0.086 0.914
27 H 0.088 0.912
28 H 0.099 0.901
29 H 0.121 0.879
30 H 0.114 0.886
31 H 0.102 0.898
32 H 0.099 0.901
33 H 0.100 0.900
34 H 0.083 0.917
35 H 0.101 0.899
36 H 0.085 0.915
37 H 0.041 0.959
38 H 0.064 0.936
39 H 0.042 0.958
40 H 0.116 0.884
41 H 0.082 0.918
42 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 7.083 -10.831 -10.640 16.754
hybrid contribution -0.832 0.763 1.005 1.511
sum 6.251 -10.068 -9.635 15.273
Atomic orbital electron populations
1.22204 0.93375 1.03489 1.03963 1.21868 0.96018 0.76962 1.04933
1.48526 1.50462 1.12540 1.01926 1.77190 1.23388 1.03920 1.05391
1.22245 0.96865 0.94203 0.91683 1.20266 1.02331 0.93265 0.97490
1.19776 1.17255 0.94859 0.94076 1.17162 0.84876 0.81108 0.79170
1.90729 1.18610 1.76125 1.57263 1.47995 1.09195 1.25060 1.49265
1.22252 0.99906 0.87415 0.93235 1.21305 0.85849 0.99616 0.92785
1.44015 1.03096 1.28033 1.56202 1.19254 0.87993 0.90032 1.40948
0.91386 1.25057 0.98464 0.95903 1.00121 1.70026 1.17206 1.14472
1.52963 0.86226 0.81988 0.81312 0.77271 1.20168 1.21530 1.21736
1.21245 0.98133 0.89675 0.87499 1.22695 0.80559 1.00609 1.00029
1.21941 1.01940 0.92060 0.83899 1.98453 1.95875 1.90854 1.10394
0.91358 0.91233 0.90095 0.87949 0.88621 0.89824 0.90123 0.90028
0.91725 0.89869 0.91468 0.95851 0.93616 0.95815 0.88356 0.91849
0.91567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16
2 C 0.12 1.12 6.97 -4.04 -0.03 1.09 16
3 N -0.35 -4.69 3.58 -57.57 -0.21 -4.90 16
4 N -0.28 -3.96 12.49 33.90 0.42 -3.53 16
5 C 0.12 1.71 7.26 -82.01 -0.60 1.12 16
6 C -0.07 -0.86 10.28 36.01 0.37 -0.49 16
7 C -0.24 -4.07 3.85 -105.02 -0.40 -4.47 16
8 C 0.59 11.10 7.08 -12.58 -0.09 11.01 16
9 O -0.55 -11.64 16.51 5.27 0.09 -11.55 16
10 N -0.58 -10.93 2.95 -173.49 -0.51 -11.45 16
11 C 0.10 1.77 6.59 -3.59 -0.02 1.74 16
12 C 0.13 2.75 6.67 -3.59 -0.02 2.72 16
13 N -0.59 -14.32 2.96 -171.73 -0.51 -14.83 16
14 C -0.25 -6.67 9.57 -15.06 -0.14 -6.81 16
15 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16
16 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16
17 N -0.90 -25.27 11.19 55.49 0.62 -24.65 16
18 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16
19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
22 C 0.16 3.69 5.54 -3.34 -0.02 3.68 16
23 C 0.09 1.61 6.52 -3.34 -0.02 1.59 16
24 C 0.16 2.43 7.44 -16.44 -0.12 2.31 16
25 Cl 0.02 0.24 28.56 -51.86 -1.48 -1.24 16
26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
30 H 0.10 0.75 7.77 -51.93 -0.40 0.34 16
31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
33 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16
34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16
35 H 0.08 1.50 6.99 -51.93 -0.36 1.13 16
36 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16
37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
38 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16
39 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16
40 H 0.10 2.50 5.99 -51.93 -0.31 2.18 16
41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
42 H 0.07 1.18 6.25 -51.93 -0.32 0.86 16
LS Contribution 362.65 15.07 5.47 5.47
Total: -1.00 -31.80 362.65 -7.95 -39.75
By element:
Atomic # 1 Polarization: 4.58 SS G_CDS: -6.01 Total: -1.43 kcal
Atomic # 6 Polarization: 13.20 SS G_CDS: -0.81 Total: 12.39 kcal
Atomic # 7 Polarization: -59.17 SS G_CDS: -0.18 Total: -59.35 kcal
Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal
Atomic # 17 Polarization: 0.24 SS G_CDS: -1.48 Total: -1.24 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -31.80 -7.95 -39.75 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000073099787.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.250 kcal
(2) G-P(sol) polarization free energy of solvation -31.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.452 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.499 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.15 seconds