Wall clock time and date at job start Tue Mar 31 2020 17:12:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46505 * 109.47304 * 2 1
4 4 N 1.39921 * 125.74742 * 269.97910 * 3 2 1
5 5 C 1.30415 * 108.95799 * 179.75646 * 4 3 2
6 6 C 1.50703 * 125.97816 * 180.24531 * 5 4 3
7 7 C 1.41342 * 108.04854 * 0.40312 * 5 4 3
8 8 C 1.47301 * 126.43856 * 179.85365 * 7 5 4
9 9 O 1.21614 * 120.00117 * 269.72240 * 8 7 5
10 10 N 1.34775 * 119.99700 * 89.71363 * 8 7 5
11 11 C 1.46966 * 120.59166 * 180.02562 * 10 8 7
12 12 C 1.53376 * 108.63466 * 235.20485 * 11 10 8
13 13 N 1.46968 * 108.63457 * 310.57917 * 12 11 10
14 14 C 1.36937 * 120.59055 * 235.20386 * 13 12 11
15 15 H 1.07997 * 120.00034 * 28.27851 * 14 13 12
16 16 C 1.38806 * 119.99615 * 208.56371 * 14 13 12
17 17 N 1.31620 * 120.00437 * 17.30811 * 16 14 13
18 18 Si 1.86800 * 119.99904 * 197.31053 * 16 14 13
19 19 H 1.48502 * 109.47086 * 359.97438 * 18 16 14
20 20 H 1.48503 * 109.47060 * 119.99742 * 18 16 14
21 21 H 1.48496 * 109.47229 * 239.99810 * 18 16 14
22 22 C 1.46960 * 118.81400 * 55.47579 * 13 12 11
23 23 C 1.46965 * 120.59702 * 359.97438 * 10 8 7
24 24 C 1.34346 * 125.74669 * 89.99940 * 3 2 1
25 25 Cl 1.73596 * 126.32304 * 359.97438 * 24 3 2
26 26 H 1.09004 * 109.46915 * 300.00426 * 1 2 3
27 27 H 1.08993 * 109.46980 * 60.00022 * 1 2 3
28 28 H 1.08996 * 109.46926 * 180.02562 * 1 2 3
29 29 H 1.08996 * 109.47155 * 239.99850 * 2 1 3
30 30 H 1.08998 * 109.47404 * 120.00077 * 2 1 3
31 31 H 1.08996 * 109.46726 * 270.19315 * 6 5 4
32 32 H 1.08995 * 109.47051 * 30.18864 * 6 5 4
33 33 H 1.09000 * 109.47318 * 150.19025 * 6 5 4
34 34 H 1.08997 * 109.60957 * 115.46314 * 11 10 8
35 35 H 1.08992 * 109.61068 * 354.95221 * 11 10 8
36 36 H 1.08998 * 109.60957 * 190.83139 * 12 11 10
37 37 H 1.09001 * 109.60896 * 70.31950 * 12 11 10
38 38 H 0.96998 * 120.00790 * 179.97438 * 17 16 14
39 39 H 1.09011 * 109.61027 * 64.26353 * 22 13 12
40 40 H 1.09000 * 109.60956 * 184.77581 * 22 13 12
41 41 H 1.08998 * 109.61178 * 244.54238 * 23 10 8
42 42 H 1.09005 * 109.60650 * 4.87678 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 7 2.2913 2.1518 -1.1356
5 6 2.7025 3.3307 -0.7589
6 6 3.0961 4.4642 -1.6707
7 6 2.7178 3.3582 0.6542
8 6 3.1189 4.4935 1.5028
9 8 4.2775 4.6111 1.8533
10 7 2.2020 5.4018 1.8907
11 6 2.5879 6.5397 2.7369
12 6 1.7032 6.5410 3.9898
13 7 0.2996 6.4115 3.5738
14 6 -0.6320 7.3344 3.9680
15 1 -0.3317 8.3515 4.1723
16 6 -1.9613 6.9612 4.1108
17 7 -2.2809 5.6879 4.2057
18 14 -3.2968 8.2661 4.1680
19 1 -2.6802 9.6112 4.0424
20 1 -4.2479 8.0504 3.0482
21 1 -4.0238 8.1740 5.4596
22 6 -0.0873 5.2705 2.7323
23 6 0.7985 5.2727 1.4742
24 6 2.2800 2.1212 1.0904
25 17 2.1013 1.6176 2.7420
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0276 0.0005
29 1 1.8933 -0.5138 -0.8899
30 1 1.8934 -0.5138 0.8899
31 1 4.1607 4.3974 -1.8946
32 1 2.5254 4.4002 -2.5971
33 1 2.8868 5.4147 -1.1800
34 1 2.4444 7.4698 2.1869
35 1 3.6337 6.4414 3.0276
36 1 1.8391 7.4764 4.5327
37 1 1.9741 5.7011 4.6297
38 1 -3.2098 5.4271 4.3058
39 1 0.0591 4.3422 3.2847
40 1 -1.1342 5.3667 2.4445
41 1 0.5280 6.1128 0.8345
42 1 0.6633 4.3390 0.9283
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000073099787.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:12:01
Heat of formation + Delta-G solvation = 46.590318 kcal
Electronic energy + Delta-G solvation = -26648.175765 eV
Core-core repulsion = 22884.107160 eV
Total energy + Delta-G solvation = -3764.068605 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.125 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.68487 -40.67903 -38.37476 -38.15044 -35.98473 -35.54926 -33.28798 -32.39210
-31.98707 -31.08647 -28.89267 -28.50833 -25.85836 -24.84876 -24.28444 -23.10971
-22.01926 -21.26058 -20.23001 -19.04729 -18.12477 -17.71926 -17.03291 -16.76888
-16.51745 -16.31103 -15.63194 -15.45600 -15.37542 -15.15680 -14.98529 -14.74999
-14.35101 -14.23320 -13.77354 -13.65747 -13.40371 -13.32964 -13.20394 -13.17109
-12.88624 -12.71193 -12.68159 -12.46786 -12.28874 -12.19676 -12.02469 -11.91648
-11.85153 -11.64299 -11.03791 -10.59046 -10.36714 -9.84576 -9.75807 -8.64511
-7.86766 -5.34531 0.15156 0.27018 1.16801 1.40083 1.44362 1.49489
1.52069 1.61788 2.11773 2.53097 3.17125 3.28346 3.60573 3.67344
3.71948 3.96858 4.00175 4.18923 4.24247 4.25041 4.25497 4.41637
4.57036 4.63084 4.68038 4.69188 4.71043 4.74188 4.78666 4.84720
4.94021 5.08861 5.15990 5.23789 5.29781 5.52388 5.53238 5.61847
5.67209 6.29864 6.37054 6.42064 7.09892 7.12587 7.80223 8.34387
9.18708
Molecular weight = 326.13amu
Principal moments of inertia in cm(-1)
A = 0.013858 B = 0.004410 C = 0.003976
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.988270 B = 6348.311806 C = 7040.726785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.111 3.889
3 N -0.343 5.343
4 N -0.279 5.279
5 C 0.115 3.885
6 C -0.075 4.075
7 C -0.275 4.275
8 C 0.598 3.402
9 O -0.575 6.575
10 N -0.586 5.586
11 C 0.105 3.895
12 C 0.132 3.868
13 N -0.606 5.606
14 C -0.261 4.261
15 H 0.072 0.928
16 C -0.045 4.045
17 N -0.934 5.934
18 Si 0.966 3.034
19 H -0.266 1.266
20 H -0.289 1.289
21 H -0.296 1.296
22 C 0.171 3.829
23 C 0.106 3.894
24 C 0.154 3.846
25 Cl 0.015 6.985
26 H 0.047 0.953
27 H 0.060 0.940
28 H 0.110 0.890
29 H 0.125 0.875
30 H 0.110 0.890
31 H 0.095 0.905
32 H 0.100 0.900
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.090 0.910
36 H 0.077 0.923
37 H 0.008 0.992
38 H 0.251 0.749
39 H -0.002 1.002
40 H 0.073 0.927
41 H 0.073 0.927
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.211 -9.945 -11.520 16.840
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.007 4.007
3 N -0.126 5.126
4 N -0.103 5.103
5 C -0.052 4.052
6 C -0.133 4.133
7 C -0.291 4.291
8 C 0.385 3.615
9 O -0.456 6.456
10 N -0.317 5.317
11 C -0.019 4.019
12 C 0.005 3.995
13 N -0.329 5.329
14 C -0.391 4.391
15 H 0.090 0.910
16 C -0.241 4.241
17 N -0.580 5.580
18 Si 0.794 3.206
19 H -0.190 1.190
20 H -0.216 1.216
21 H -0.223 1.223
22 C 0.045 3.955
23 C -0.018 4.018
24 C -0.004 4.004
25 Cl 0.043 6.957
26 H 0.067 0.933
27 H 0.079 0.921
28 H 0.129 0.871
29 H 0.143 0.857
30 H 0.128 0.872
31 H 0.114 0.886
32 H 0.119 0.881
33 H 0.096 0.904
34 H 0.098 0.902
35 H 0.108 0.892
36 H 0.096 0.904
37 H 0.026 0.974
38 H 0.060 0.940
39 H 0.017 0.983
40 H 0.091 0.909
41 H 0.091 0.909
42 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 7.314 -10.879 -12.138 17.865
hybrid contribution -0.871 0.685 1.510 1.873
sum 6.443 -10.194 -10.628 16.074
Atomic orbital electron populations
1.22176 0.92792 1.05005 1.02468 1.22315 0.96460 0.75147 1.06817
1.48919 1.49141 1.13465 1.01032 1.77174 1.23490 1.03919 1.05701
1.22666 0.96349 0.94986 0.91152 1.20388 1.03391 0.91861 0.97656
1.19743 1.19618 0.94773 0.94935 1.17374 0.84289 0.81115 0.78676
1.90706 1.19701 1.76768 1.58381 1.48023 1.09054 1.25276 1.49340
1.22138 0.99478 0.88070 0.92192 1.21383 0.84644 0.99475 0.93955
1.44257 1.04050 1.27895 1.56724 1.19570 0.88661 0.90618 1.40274
0.91026 1.25766 1.00362 0.97584 1.00369 1.70170 1.17232 1.16211
1.54340 0.85231 0.79231 0.79479 0.76611 1.18997 1.21562 1.22328
1.21005 0.97585 0.88264 0.88671 1.22373 0.79867 1.01641 0.97899
1.21997 1.01851 0.92233 0.84345 1.98451 1.95865 1.90823 1.10593
0.93342 0.92111 0.87106 0.85665 0.87171 0.88639 0.88110 0.90419
0.90240 0.89182 0.90437 0.97409 0.94022 0.98347 0.90926 0.90863
0.90422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.57 10.24 71.98 0.74 -1.83 16
2 C 0.11 1.81 6.97 86.38 0.60 2.41 16
3 N -0.34 -8.66 3.58 -336.05 -1.20 -9.86 16
4 N -0.28 -7.52 12.49 -46.66 -0.58 -8.10 16
5 C 0.11 3.19 7.26 43.53 0.32 3.51 16
6 C -0.07 -1.56 10.28 71.24 0.73 -0.83 16
7 C -0.27 -8.93 3.85 -20.12 -0.08 -9.01 16
8 C 0.60 22.07 7.08 86.63 0.61 22.68 16
9 O -0.58 -24.10 16.51 -4.07 -0.07 -24.17 16
10 N -0.59 -21.53 2.95 -821.06 -2.42 -23.94 16
11 C 0.10 3.76 6.59 86.42 0.57 4.33 16
12 C 0.13 5.48 6.67 86.42 0.58 6.05 16
13 N -0.61 -29.48 2.96 -697.22 -2.06 -31.54 16
14 C -0.26 -13.75 9.57 84.03 0.80 -12.94 16
15 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16
16 C -0.05 -2.42 4.91 84.86 0.42 -2.00 16
17 N -0.93 -53.20 11.19 21.65 0.24 -52.96 16
18 Si 0.97 43.19 29.59 68.60 2.03 45.22 16
19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16
21 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16
22 C 0.17 7.98 5.54 86.58 0.48 8.46 16
23 C 0.11 3.96 6.52 86.58 0.56 4.52 16
24 C 0.15 4.61 7.44 84.32 0.63 5.24 16
25 Cl 0.01 0.43 28.56 -2.72 -0.08 0.35 16
26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
29 H 0.13 1.50 8.14 -2.39 -0.02 1.49 16
30 H 0.11 1.49 7.77 -2.39 -0.02 1.47 16
31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16
33 H 0.08 1.69 8.01 -2.39 -0.02 1.67 16
34 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16
35 H 0.09 3.14 6.99 -2.39 -0.02 3.13 16
36 H 0.08 3.02 7.93 -2.39 -0.02 3.00 16
37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
38 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16
39 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16
40 H 0.07 3.77 5.99 -2.39 -0.01 3.76 16
41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16
42 H 0.08 2.73 6.25 -2.38 -0.01 2.71 16
Total: -1.00 -67.94 362.65 3.85 -64.09
By element:
Atomic # 1 Polarization: 9.30 SS G_CDS: 1.03 Total: 10.33 kcal
Atomic # 6 Polarization: 23.64 SS G_CDS: 6.96 Total: 30.60 kcal
Atomic # 7 Polarization: -120.38 SS G_CDS: -6.03 Total: -126.41 kcal
Atomic # 8 Polarization: -24.10 SS G_CDS: -0.07 Total: -24.17 kcal
Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal
Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.35 kcal
Total: -67.94 3.85 -64.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000073099787.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.676 kcal
(2) G-P(sol) polarization free energy of solvation -67.936 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds