Wall clock time and date at job start Tue Mar 31 2020 14:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.53000 * 109.46946 * 240.00318 * 2 1 3 5 5 C 1.50699 * 109.47640 * 120.00004 * 2 1 3 6 6 C 1.38295 * 119.96796 * 0.02562 * 5 2 1 7 7 C 1.38240 * 120.10794 * 179.97438 * 6 5 2 8 8 C 1.38171 * 120.06065 * 0.02562 * 7 6 5 9 9 C 1.38709 * 119.94081 * 0.02562 * 8 7 6 10 10 O 1.35901 * 120.05787 * 179.97438 * 9 8 7 11 11 S 1.52195 * 114.00188 * 270.02372 * 10 9 8 12 12 O 1.42100 * 104.27615 * 191.06883 * 11 10 9 13 13 O 1.42096 * 104.27769 * 318.92853 * 11 10 9 14 14 C 1.81409 * 104.44748 * 75.00021 * 11 10 9 15 15 C 1.53001 * 109.47071 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47032 * 179.97438 * 15 14 11 17 17 C 1.50707 * 109.47148 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99569 * 359.97438 * 17 16 15 19 19 C 1.37868 * 120.00127 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00367 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00077 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46930 * 120.00308 * 21 19 17 24 24 H 1.48500 * 109.47037 * 240.00253 * 21 19 17 25 25 C 1.38120 * 119.97500 * 180.02562 * 5 2 1 26 26 H 1.09001 * 109.47328 * 299.99440 * 1 2 3 27 27 H 1.08997 * 109.47528 * 59.99979 * 1 2 3 28 28 H 1.09000 * 109.46857 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47455 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47233 * 299.99922 * 3 2 1 31 31 H 1.09004 * 109.47367 * 60.00186 * 3 2 1 32 32 H 1.08994 * 109.47358 * 299.99405 * 4 2 1 33 33 H 1.09002 * 109.47478 * 59.99945 * 4 2 1 34 34 H 1.09007 * 109.46851 * 179.97438 * 4 2 1 35 35 H 1.07995 * 119.94657 * 359.72586 * 6 5 2 36 36 H 1.08005 * 119.96924 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.03244 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47100 * 299.99547 * 14 11 10 39 39 H 1.08997 * 109.46965 * 59.99863 * 14 11 10 40 40 H 1.09000 * 109.46694 * 299.99679 * 15 14 11 41 41 H 1.09000 * 109.47433 * 59.99506 * 15 14 11 42 42 H 1.09000 * 109.47198 * 299.99467 * 16 15 14 43 43 H 1.08994 * 109.47633 * 59.99854 * 16 15 14 44 44 H 0.96995 * 120.00117 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.02621 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1333 -1.2362 2.1401 7 6 1.5910 -1.8889 3.2695 8 6 2.9486 -2.0170 3.4924 9 6 3.8524 -1.4895 2.5820 10 8 5.1882 -1.6137 2.7992 11 16 5.7953 -0.4670 3.5947 12 8 7.1979 -0.6613 3.4748 13 8 5.1691 0.6949 3.0683 14 6 5.2551 -0.7638 5.3008 15 6 5.8076 0.3363 6.2094 16 6 5.3514 0.0863 7.6482 17 6 5.8961 1.1695 8.5433 18 1 6.5069 1.9571 8.1275 19 6 5.6147 1.1550 9.8929 20 7 4.8713 0.1955 10.3994 21 14 6.2905 2.4973 11.0025 22 1 7.0915 3.4512 10.1940 23 1 5.1647 3.2195 11.6477 24 1 7.1519 1.8884 12.0477 25 6 3.3905 -0.8358 1.4486 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 0.0718 -1.1333 1.9700 36 1 0.8868 -2.2983 3.9787 37 1 3.3057 -2.5266 4.3751 38 1 4.1660 -0.7568 5.3435 39 1 5.6256 -1.7325 5.6359 40 1 6.8967 0.3297 6.1668 41 1 5.4367 1.3049 5.8741 42 1 4.2623 0.0932 7.6905 43 1 5.7219 -0.8822 7.9838 44 1 4.6736 0.1851 11.3489 45 1 4.0923 -0.4253 0.7377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109336645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:44 Heat of formation + Delta-G solvation = -107.873746 kcal Electronic energy + Delta-G solvation = -25961.929834 eV Core-core repulsion = 22264.454463 eV Total energy + Delta-G solvation = -3697.475371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24796 -39.25034 -37.04055 -36.25878 -35.91587 -34.72542 -32.24172 -31.02986 -30.15966 -27.89256 -27.63781 -27.49415 -24.09226 -23.41149 -23.29435 -21.13323 -20.37034 -19.35529 -17.97738 -17.55113 -17.26991 -16.74968 -16.28713 -15.56015 -15.34572 -14.98784 -14.57532 -14.50661 -14.37194 -14.12843 -13.86590 -13.27560 -13.19659 -12.71003 -12.61334 -12.47286 -12.33859 -12.15858 -12.07129 -12.03565 -12.00011 -11.93762 -11.90114 -11.82565 -11.29939 -11.23858 -11.01748 -10.95050 -10.86520 -10.79987 -10.41558 -9.98301 -9.45022 -9.19186 -9.11144 -8.99120 -8.42612 -6.07358 -4.10336 0.12637 0.97048 1.05573 2.21592 3.28463 3.30523 3.36030 3.41005 3.76279 4.07073 4.19902 4.40456 4.41201 4.57237 4.67878 4.76163 4.82810 4.91256 4.95397 5.08556 5.12082 5.18492 5.29312 5.31049 5.36996 5.46698 5.52849 5.59331 5.61878 5.73539 5.79578 5.80775 5.85851 5.91356 5.96617 6.07119 6.12056 6.23421 6.28018 6.39977 6.61398 6.83942 7.55013 7.64525 7.90710 8.30905 8.96024 9.54564 11.03945 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.002950 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.509683 B = 9490.463165 C =10003.542293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.030 4.030 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.057 4.057 6 C -0.108 4.108 7 C -0.097 4.097 8 C -0.134 4.134 9 C 0.074 3.926 10 O -0.670 6.670 11 S 2.582 3.418 12 O -0.934 6.934 13 O -0.955 6.955 14 C -0.631 4.631 15 C -0.103 4.103 16 C 0.030 3.970 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.088 4.088 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 -4.744 -21.942 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.198 4.198 5 C -0.058 4.058 6 C -0.126 4.126 7 C -0.115 4.115 8 C -0.154 4.154 9 C 0.033 3.967 10 O -0.629 6.629 11 S 2.681 3.319 12 O -0.932 6.932 13 O -0.953 6.953 14 C -0.761 4.761 15 C -0.142 4.142 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.108 4.108 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.374 -4.678 -22.451 25.170 hybrid contribution 0.344 0.356 1.490 1.570 sum -10.031 -4.322 -20.961 23.636 Atomic orbital electron populations 1.21983 0.93758 1.02077 1.02379 1.19547 0.95954 0.95438 0.92095 1.21942 1.01828 0.94025 1.02256 1.21926 1.01440 1.00288 0.96178 1.19727 0.91970 0.97631 0.96425 1.21401 1.00464 0.97104 0.93659 1.21068 0.94346 0.98517 0.97602 1.21457 0.93602 1.00607 0.99723 1.18007 0.77043 1.03680 0.97985 1.85736 1.28735 1.68808 1.79644 1.05855 0.75004 0.73397 0.77694 1.93608 1.29437 1.84267 1.85874 1.93611 1.76514 1.49263 1.75919 1.30814 1.12478 1.11026 1.21771 1.21487 1.00303 0.93887 0.98511 1.19072 0.96897 0.97538 0.87287 1.21283 1.32013 1.10278 0.92796 0.92287 1.25019 0.95113 0.96014 0.98243 1.69965 1.37913 1.32540 1.13015 0.86497 0.78830 0.81889 0.80592 1.19580 1.20940 1.20927 1.21074 0.96270 0.97217 0.96257 0.91928 0.92073 0.92150 0.91911 0.92148 0.91933 0.92332 0.92006 0.92257 0.84500 0.84281 0.83943 0.85159 0.84815 0.91421 0.91401 0.96073 0.96059 0.92944 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 7.13 37.16 0.27 -0.62 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.37 16 3 C -0.14 -1.22 8.28 37.16 0.31 -0.92 16 4 C -0.14 -0.99 8.29 37.16 0.31 -0.69 16 5 C -0.06 -0.58 4.76 -104.64 -0.50 -1.08 16 6 C -0.11 -0.96 8.97 -39.56 -0.35 -1.32 16 7 C -0.10 -0.91 10.04 -39.61 -0.40 -1.31 16 8 C -0.13 -1.51 8.46 -39.43 -0.33 -1.85 16 9 C 0.07 0.99 4.80 -39.21 -0.19 0.80 16 10 O -0.67 -9.81 10.05 -51.75 -0.52 -10.33 16 11 S 2.58 42.12 5.17 -107.50 -0.56 41.57 16 12 O -0.93 -17.98 18.09 -67.04 -1.21 -19.19 16 13 O -0.95 -16.90 16.26 -67.04 -1.09 -18.00 16 14 C -0.63 -10.16 5.46 37.16 0.20 -9.96 16 15 C -0.10 -2.10 5.16 -26.73 -0.14 -2.24 16 16 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 17 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.09 -1.08 7.72 -39.43 -0.30 -1.39 16 26 H 0.06 0.38 7.51 -51.93 -0.39 -0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 7.51 -51.93 -0.39 -0.06 16 29 H 0.06 0.60 7.39 -51.93 -0.38 0.21 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 35 H 0.14 0.87 5.89 -52.49 -0.31 0.57 16 36 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.14 1.38 7.49 -52.49 -0.39 0.98 16 38 H 0.13 1.86 6.60 -51.92 -0.34 1.52 16 39 H 0.13 1.91 8.14 -51.93 -0.42 1.48 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.14 1.60 7.10 -52.49 -0.37 1.23 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -34.40 375.59 -10.97 -45.37 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.16 Total: -2.01 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: -1.81 Total: -33.86 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -2.82 Total: -47.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 42.12 SS G_CDS: -0.56 Total: 41.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.40 -10.97 -45.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109336645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.500 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds