Wall clock time and date at job start Tue Mar 31 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.53000 * 109.46946 * 240.00318 * 2 1 3 5 5 C 1.50699 * 109.47640 * 120.00004 * 2 1 3 6 6 C 1.38295 * 119.96796 * 0.02562 * 5 2 1 7 7 C 1.38240 * 120.10794 * 179.97438 * 6 5 2 8 8 C 1.38171 * 120.06065 * 0.02562 * 7 6 5 9 9 C 1.38709 * 119.94081 * 0.02562 * 8 7 6 10 10 O 1.35901 * 120.05787 * 179.97438 * 9 8 7 11 11 S 1.52195 * 114.00188 * 270.02372 * 10 9 8 12 12 O 1.42100 * 104.27615 * 191.06883 * 11 10 9 13 13 O 1.42096 * 104.27769 * 318.92853 * 11 10 9 14 14 C 1.81409 * 104.44748 * 75.00021 * 11 10 9 15 15 C 1.53001 * 109.47071 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47032 * 179.97438 * 15 14 11 17 17 C 1.50707 * 109.47148 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99569 * 359.97438 * 17 16 15 19 19 C 1.37868 * 120.00127 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00367 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00077 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46930 * 120.00308 * 21 19 17 24 24 H 1.48500 * 109.47037 * 240.00253 * 21 19 17 25 25 C 1.38120 * 119.97500 * 180.02562 * 5 2 1 26 26 H 1.09001 * 109.47328 * 299.99440 * 1 2 3 27 27 H 1.08997 * 109.47528 * 59.99979 * 1 2 3 28 28 H 1.09000 * 109.46857 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47455 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47233 * 299.99922 * 3 2 1 31 31 H 1.09004 * 109.47367 * 60.00186 * 3 2 1 32 32 H 1.08994 * 109.47358 * 299.99405 * 4 2 1 33 33 H 1.09002 * 109.47478 * 59.99945 * 4 2 1 34 34 H 1.09007 * 109.46851 * 179.97438 * 4 2 1 35 35 H 1.07995 * 119.94657 * 359.72586 * 6 5 2 36 36 H 1.08005 * 119.96924 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.03244 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47100 * 299.99547 * 14 11 10 39 39 H 1.08997 * 109.46965 * 59.99863 * 14 11 10 40 40 H 1.09000 * 109.46694 * 299.99679 * 15 14 11 41 41 H 1.09000 * 109.47433 * 59.99506 * 15 14 11 42 42 H 1.09000 * 109.47198 * 299.99467 * 16 15 14 43 43 H 1.08994 * 109.47633 * 59.99854 * 16 15 14 44 44 H 0.96995 * 120.00117 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.02621 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1333 -1.2362 2.1401 7 6 1.5910 -1.8889 3.2695 8 6 2.9486 -2.0170 3.4924 9 6 3.8524 -1.4895 2.5820 10 8 5.1882 -1.6137 2.7992 11 16 5.7953 -0.4670 3.5947 12 8 7.1979 -0.6613 3.4748 13 8 5.1691 0.6949 3.0683 14 6 5.2551 -0.7638 5.3008 15 6 5.8076 0.3363 6.2094 16 6 5.3514 0.0863 7.6482 17 6 5.8961 1.1695 8.5433 18 1 6.5069 1.9571 8.1275 19 6 5.6147 1.1550 9.8929 20 7 4.8713 0.1955 10.3994 21 14 6.2905 2.4973 11.0025 22 1 7.0915 3.4512 10.1940 23 1 5.1647 3.2195 11.6477 24 1 7.1519 1.8884 12.0477 25 6 3.3905 -0.8358 1.4486 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 0.0718 -1.1333 1.9700 36 1 0.8868 -2.2983 3.9787 37 1 3.3057 -2.5266 4.3751 38 1 4.1660 -0.7568 5.3435 39 1 5.6256 -1.7325 5.6359 40 1 6.8967 0.3297 6.1668 41 1 5.4367 1.3049 5.8741 42 1 4.2623 0.0932 7.6905 43 1 5.7219 -0.8822 7.9838 44 1 4.6736 0.1851 11.3489 45 1 4.0923 -0.4253 0.7377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109336645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:43 Heat of formation + Delta-G solvation = -128.163518 kcal Electronic energy + Delta-G solvation = -25962.809664 eV Core-core repulsion = 22264.454463 eV Total energy + Delta-G solvation = -3698.355201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.23633 -40.09000 -38.42512 -37.35483 -36.95407 -36.50710 -34.22350 -31.83746 -30.97384 -29.72663 -28.18779 -28.11059 -25.81737 -24.48702 -24.14246 -22.57323 -21.64716 -20.30846 -19.18907 -18.73313 -18.55770 -18.06707 -17.64169 -16.71349 -16.61778 -16.40602 -15.82198 -15.67274 -15.16680 -14.98732 -14.63802 -14.55115 -14.29133 -14.12830 -14.10791 -13.64941 -13.50442 -13.39985 -13.32900 -13.14552 -13.01409 -12.90635 -12.79368 -12.78995 -12.67894 -12.57012 -12.51983 -12.19316 -11.84076 -11.78934 -11.66601 -11.46274 -11.38628 -11.08605 -10.58434 -9.98562 -9.83741 -8.23412 -6.34137 -1.10693 0.07529 0.21803 1.04340 1.39407 1.40377 1.53446 2.38520 2.46916 2.49830 2.86615 3.10402 3.44658 3.57213 3.69346 3.70392 3.84398 4.03322 4.10724 4.13153 4.18637 4.30703 4.32614 4.38652 4.58064 4.78428 4.79548 4.82008 4.84051 4.92465 4.96512 5.02524 5.03982 5.04887 5.06309 5.17261 5.25062 5.29558 5.43312 5.44183 5.44271 5.58682 5.60986 5.78285 5.82390 6.18534 6.81130 7.35216 8.88316 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.002950 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.509683 B = 9490.463165 C =10003.542293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.063 4.063 6 C -0.099 4.099 7 C -0.096 4.096 8 C -0.144 4.144 9 C 0.036 3.964 10 O -0.665 6.665 11 S 2.605 3.395 12 O -0.968 6.968 13 O -0.972 6.972 14 C -0.627 4.627 15 C -0.103 4.103 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.060 0.940 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.277 1.277 25 C -0.107 4.107 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.007 0.993 43 H 0.004 0.996 44 H 0.265 0.735 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 -4.643 -22.388 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.198 4.198 5 C -0.063 4.063 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.164 4.164 9 C -0.005 4.005 10 O -0.625 6.625 11 S 2.704 3.296 12 O -0.967 6.967 13 O -0.971 6.971 14 C -0.756 4.756 15 C -0.142 4.142 16 C -0.006 4.006 17 C -0.590 4.590 18 H 0.078 0.922 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.203 1.203 25 C -0.127 4.127 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.186 0.814 36 H 0.188 0.812 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.025 0.975 43 H 0.022 0.978 44 H 0.074 0.926 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.248 -4.569 -22.903 26.371 hybrid contribution 0.810 0.278 1.553 1.774 sum -11.438 -4.292 -21.350 24.598 Atomic orbital electron populations 1.21985 0.91867 1.03058 1.03103 1.19624 0.97412 0.94592 0.91478 1.21958 1.00746 0.94844 1.02655 1.21926 1.00764 1.00677 0.96408 1.20063 0.91225 0.97478 0.97517 1.21834 1.01847 0.95379 0.92718 1.21507 0.93950 0.97753 0.98173 1.21757 0.94306 1.00528 0.99807 1.18443 0.76392 1.06098 0.99575 1.85704 1.30053 1.67664 1.79073 1.05104 0.74012 0.73061 0.77380 1.93557 1.31774 1.84933 1.86395 1.93574 1.76600 1.50597 1.76303 1.30721 1.13713 1.10401 1.20781 1.21310 1.00539 0.95695 0.96626 1.18961 0.95786 0.95987 0.89893 1.21747 1.32268 1.11102 0.93838 0.92194 1.25910 0.95331 0.98366 0.99839 1.70069 1.38954 1.34245 1.13600 0.85437 0.78361 0.79008 0.78506 1.18853 1.20132 1.20280 1.21237 0.97486 0.97736 0.96232 0.91720 0.90947 0.90988 0.93685 0.90398 0.92853 0.91886 0.90536 0.93439 0.81429 0.81234 0.82700 0.83204 0.82947 0.91403 0.91114 0.97487 0.97764 0.92603 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 7.13 71.98 0.51 -0.81 16 2 C -0.03 -0.44 0.85 -52.93 -0.05 -0.49 16 3 C -0.14 -2.37 8.28 71.98 0.60 -1.78 16 4 C -0.14 -1.79 8.29 71.98 0.60 -1.20 16 5 C -0.06 -1.18 4.76 -19.88 -0.09 -1.27 16 6 C -0.10 -1.50 8.97 22.28 0.20 -1.30 16 7 C -0.10 -1.54 10.04 22.25 0.22 -1.31 16 8 C -0.14 -3.05 8.46 22.37 0.19 -2.86 16 9 C 0.04 0.95 4.80 22.51 0.11 1.06 16 10 O -0.67 -19.68 10.05 -61.53 -0.62 -20.30 16 11 S 2.60 85.92 5.17 -56.49 -0.29 85.63 16 12 O -0.97 -38.03 18.09 -118.57 -2.15 -40.18 16 13 O -0.97 -35.03 16.26 -118.57 -1.93 -36.96 16 14 C -0.63 -19.95 5.46 71.98 0.39 -19.55 16 15 C -0.10 -4.22 5.16 30.59 0.16 -4.07 16 16 C 0.03 1.64 4.97 29.85 0.15 1.79 16 17 C -0.55 -31.28 9.11 25.60 0.23 -31.04 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.22 5.46 84.65 0.46 0.68 16 20 N -0.93 -55.22 13.29 21.44 0.28 -54.93 16 21 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C -0.11 -2.63 7.72 22.37 0.17 -2.46 16 26 H 0.06 0.59 7.51 -2.39 -0.02 0.57 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.51 7.51 -2.39 -0.02 0.50 16 29 H 0.04 0.88 7.39 -2.39 -0.02 0.86 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.71 7.39 -2.38 -0.02 0.69 16 35 H 0.17 1.46 5.89 -2.91 -0.02 1.44 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.16 2.75 7.49 -2.91 -0.02 2.73 16 38 H 0.15 4.15 6.60 -2.39 -0.02 4.13 16 39 H 0.15 4.25 8.14 -2.39 -0.02 4.23 16 40 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.27 14.74 8.31 -92.71 -0.77 13.96 16 45 H 0.13 3.21 7.10 -2.91 -0.02 3.19 16 Total: -1.00 -74.49 375.59 2.14 -72.34 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.96 Total: 12.94 kcal Atomic # 6 Polarization: -68.47 SS G_CDS: 3.85 Total: -64.61 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.28 Total: -54.93 kcal Atomic # 8 Polarization: -92.75 SS G_CDS: -4.69 Total: -97.44 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 85.92 SS G_CDS: -0.29 Total: 85.63 kcal Total: -74.49 2.14 -72.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109336645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.819 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds