Wall clock time and date at job start Tue Mar 31 2020 16:57:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.47051 * 2 1
4 4 C 1.50697 * 109.46828 * 239.99978 * 2 1 3
5 5 H 1.08004 * 119.99956 * 240.00047 * 4 2 1
6 6 C 1.37875 * 120.00304 * 60.00767 * 4 2 1
7 7 N 1.31519 * 120.00068 * 359.97438 * 6 4 2
8 8 Si 1.86796 * 120.00457 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.47097 * 59.99585 * 8 6 4
10 10 H 1.48497 * 109.47327 * 179.97438 * 8 6 4
11 11 H 1.48504 * 109.47146 * 299.99658 * 8 6 4
12 12 S 1.81402 * 109.46829 * 120.00176 * 2 1 3
13 13 C 1.76201 * 102.99911 * 286.12591 * 12 2 1
14 14 C 1.38772 * 120.10421 * 0.12092 * 13 12 2
15 15 C 1.38208 * 119.99072 * 180.27770 * 14 13 12
16 16 C 1.38295 * 120.19324 * 359.72112 * 15 14 13
17 17 C 1.38265 * 120.20297 * 0.02562 * 16 15 14
18 18 C 1.38627 * 120.01338 * 359.97438 * 17 16 15
19 19 N 1.40191 * 120.09664 * 179.97438 * 18 17 16
20 20 C 1.34772 * 120.00213 * 33.75557 * 19 18 17
21 21 O 1.21601 * 119.99790 * 354.71266 * 20 19 18
22 22 N 1.34777 * 120.00356 * 174.72114 * 20 19 18
23 23 C 1.46497 * 120.00069 * 179.97438 * 22 20 19
24 24 C 1.53001 * 109.47154 * 179.72269 * 23 22 20
25 25 C 1.53002 * 109.47034 * 179.97438 * 24 23 22
26 26 F 1.39896 * 109.46811 * 179.97438 * 25 24 23
27 27 H 1.08997 * 109.47467 * 184.12103 * 1 2 3
28 28 H 1.08994 * 109.47257 * 304.12829 * 1 2 3
29 29 H 1.09001 * 109.46708 * 64.12225 * 1 2 3
30 30 H 0.97000 * 120.00505 * 180.02562 * 7 6 4
31 31 H 1.08006 * 120.00834 * 359.97438 * 14 13 12
32 32 H 1.07994 * 119.90882 * 179.75179 * 15 14 13
33 33 H 1.07997 * 119.89626 * 180.02562 * 16 15 14
34 34 H 1.08006 * 119.99348 * 179.97438 * 17 16 15
35 35 H 0.97007 * 119.99955 * 213.73908 * 19 18 17
36 36 H 0.97001 * 119.99797 * 359.72069 * 22 20 19
37 37 H 1.08999 * 109.47296 * 299.72771 * 23 22 20
38 38 H 1.09002 * 109.47025 * 59.72686 * 23 22 20
39 39 H 1.08999 * 109.47429 * 300.00420 * 24 23 22
40 40 H 1.09002 * 109.46815 * 60.00288 * 24 23 22
41 41 H 1.08993 * 109.47614 * 300.00116 * 25 24 23
42 42 H 1.09002 * 109.46933 * 60.00546 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1314
6 6 1.6993 -0.2393 -2.4827
7 7 0.9429 0.8298 -2.6034
8 14 2.3225 -1.1195 -4.0080
9 1 1.8279 -2.5197 -4.0082
10 1 1.8270 -0.4198 -5.2204
11 1 3.8075 -1.1190 -4.0078
12 16 2.1346 -0.8552 1.4811
13 6 1.8171 0.3068 2.7671
14 6 1.2288 1.5284 2.4717
15 6 0.9861 2.4405 3.4813
16 6 1.3226 2.1374 4.7880
17 6 1.9043 0.9205 5.0921
18 6 2.1516 -0.0006 4.0861
19 7 2.7418 -1.2348 4.3924
20 6 2.4745 -1.8362 5.5685
21 8 1.7993 -1.2657 6.4034
22 7 2.9558 -3.0699 5.8193
23 6 2.6657 -3.7233 7.0979
24 6 3.3187 -5.1068 7.1234
25 6 3.0162 -5.7890 8.4591
26 9 3.6128 -7.0541 8.4821
27 1 -0.3634 -1.0250 0.0738
28 1 -0.3633 0.5765 0.8506
29 1 -0.3633 0.4485 -0.9246
30 1 0.7083 1.1611 -3.4844
31 1 0.9651 1.7685 1.4522
32 1 0.5319 3.3924 3.2494
33 1 1.1304 2.8535 5.5733
34 1 2.1661 0.6875 6.1138
35 1 3.3424 -1.6560 3.7577
36 1 3.4912 -3.5266 5.1516
37 1 3.0631 -3.1189 7.9133
38 1 1.5872 -3.8284 7.2158
39 1 2.9213 -5.7112 6.3080
40 1 4.3972 -5.0017 7.0055
41 1 3.4140 -5.1845 9.2741
42 1 1.9377 -5.8940 8.5774
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000124696583.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:57:10
Heat of formation + Delta-G solvation = -65.474875 kcal
Electronic energy + Delta-G solvation = -24388.849243 eV
Core-core repulsion = 20602.044871 eV
Total energy + Delta-G solvation = -3786.804372 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = 10.74 seconds
Orbital eigenvalues (eV)
-48.00561 -40.53610 -38.43343 -36.02519 -34.66385 -34.13352 -32.44376 -31.08550
-29.96324 -29.11918 -25.93240 -25.40721 -22.92303 -22.50209 -22.16138 -21.33177
-20.67222 -18.50463 -17.83133 -16.94265 -16.86652 -16.24170 -16.13025 -15.69422
-15.52284 -15.22339 -14.84404 -14.64318 -14.40283 -14.25310 -13.91226 -13.54906
-13.36604 -12.82134 -12.57530 -12.22050 -12.18945 -11.97915 -11.74102 -11.63083
-11.32553 -11.16278 -11.10197 -11.04366 -10.66956 -10.53073 -10.30688 -10.12011
-9.84552 -9.48747 -9.33848 -9.11542 -8.98886 -8.54070 -7.97468 -6.57758
-6.26037 -4.35816 1.59108 1.75286 2.34544 2.59146 3.11920 3.20406
3.24929 3.27914 3.57732 3.97851 4.13617 4.22173 4.25756 4.27768
4.43420 4.63713 4.89944 5.05903 5.10148 5.25723 5.32985 5.36967
5.52187 5.59348 5.65276 5.84647 5.85909 6.18620 6.25835 6.42414
6.52433 6.60028 6.70814 6.76604 6.78358 6.89534 6.91464 7.26521
7.34402 7.56234 7.72677 7.85392 7.97532 8.46281 8.62750 9.28602
10.79715
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.012367 B = 0.002868 C = 0.002381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2263.475518 B = 9760.400937 C =11758.857440
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.100 3.900
3 H 0.052 0.948
4 C -0.512 4.512
5 H 0.066 0.934
6 C 0.071 3.929
7 N -0.885 5.885
8 Si 0.907 3.093
9 H -0.274 1.274
10 H -0.285 1.285
11 H -0.274 1.274
12 S -0.175 6.175
13 C -0.089 4.089
14 C -0.118 4.118
15 C -0.118 4.118
16 C -0.125 4.125
17 C -0.109 4.109
18 C 0.162 3.838
19 N -0.674 5.674
20 C 0.707 3.293
21 O -0.577 6.577
22 N -0.745 5.745
23 C 0.142 3.858
24 C -0.168 4.168
25 C 0.066 3.934
26 F -0.217 7.217
27 H 0.038 0.962
28 H 0.021 0.979
29 H 0.096 0.904
30 H 0.267 0.733
31 H 0.139 0.861
32 H 0.120 0.880
33 H 0.120 0.880
34 H 0.140 0.860
35 H 0.409 0.591
36 H 0.400 0.600
37 H 0.071 0.929
38 H 0.071 0.929
39 H 0.084 0.916
40 H 0.082 0.918
41 H 0.079 0.921
42 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.659 -5.823 17.521 18.822
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.027 4.027
3 H 0.070 0.930
4 C -0.552 4.552
5 H 0.084 0.916
6 C -0.133 4.133
7 N -0.523 5.523
8 Si 0.733 3.267
9 H -0.200 1.200
10 H -0.210 1.210
11 H -0.199 1.199
12 S 0.073 5.927
13 C -0.204 4.204
14 C -0.143 4.143
15 C -0.138 4.138
16 C -0.147 4.147
17 C -0.131 4.131
18 C 0.062 3.938
19 N -0.321 5.321
20 C 0.408 3.592
21 O -0.455 6.455
22 N -0.401 5.401
23 C 0.017 3.983
24 C -0.206 4.206
25 C 0.011 3.989
26 F -0.198 7.198
27 H 0.058 0.942
28 H 0.040 0.960
29 H 0.115 0.885
30 H 0.077 0.923
31 H 0.157 0.843
32 H 0.138 0.862
33 H 0.138 0.862
34 H 0.157 0.843
35 H 0.246 0.754
36 H 0.234 0.766
37 H 0.089 0.911
38 H 0.090 0.910
39 H 0.102 0.898
40 H 0.101 0.899
41 H 0.097 0.903
42 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 3.494 -6.458 18.117 19.549
hybrid contribution 0.254 0.348 -1.621 1.677
sum 3.749 -6.110 16.496 17.986
Atomic orbital electron populations
1.22140 0.96263 1.00134 1.01829 1.21086 0.95666 0.97343 0.88606
0.92998 1.20599 1.32640 1.13279 0.88641 0.91577 1.24890 0.94641
0.94947 0.98863 1.69844 1.35681 1.22457 1.24303 0.86410 0.79321
0.79670 0.81255 1.19958 1.20994 1.19927 1.85002 1.78175 1.27152
1.02383 1.21788 1.03117 0.99591 0.95948 1.21332 0.99658 0.92639
1.00668 1.21035 1.00779 0.99225 0.92778 1.20935 1.00850 0.96611
0.96320 1.21148 1.00486 0.92162 0.99277 1.16930 0.99977 0.85101
0.91842 1.42512 1.49378 1.21199 1.19027 1.15815 0.80010 0.81063
0.82324 1.90904 1.43372 1.64892 1.46313 1.45013 1.58416 1.16800
1.19895 1.21006 1.00667 0.91384 0.85206 1.22383 1.02976 0.96414
0.98821 1.21827 0.98743 0.80124 0.98222 1.92782 1.86131 1.43203
1.97722 0.94244 0.96033 0.88530 0.92304 0.84328 0.86209 0.86241
0.84255 0.75442 0.76606 0.91119 0.91044 0.89773 0.89905 0.90305
0.90252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.35 8.64 37.16 0.32 -3.02 16
2 C 0.10 2.40 1.97 -27.88 -0.05 2.34 16
3 H 0.05 1.33 6.88 -51.92 -0.36 0.97 16
4 C -0.51 -13.37 8.58 -34.44 -0.30 -13.66 16
5 H 0.07 1.72 7.71 -52.48 -0.40 1.32 16
6 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16
7 N -0.89 -23.66 11.30 55.43 0.63 -23.04 16
8 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16
9 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
12 S -0.17 -3.59 20.06 -107.50 -2.16 -5.74 16
13 C -0.09 -1.69 6.11 -38.91 -0.24 -1.92 16
14 C -0.12 -2.19 8.27 -39.39 -0.33 -2.52 16
15 C -0.12 -1.86 10.04 -39.57 -0.40 -2.25 16
16 C -0.13 -1.88 10.04 -39.55 -0.40 -2.28 16
17 C -0.11 -1.79 8.71 -39.43 -0.34 -2.13 16
18 C 0.16 2.81 6.34 -83.42 -0.53 2.29 16
19 N -0.67 -9.94 5.05 -14.06 -0.07 -10.01 16
20 C 0.71 9.99 8.42 -86.92 -0.73 9.26 16
21 O -0.58 -9.87 13.68 5.28 0.07 -9.80 16
22 N -0.75 -7.29 5.56 -65.22 -0.36 -7.66 16
23 C 0.14 1.10 5.67 -4.04 -0.02 1.08 16
24 C -0.17 -0.94 5.78 -26.73 -0.15 -1.10 16
25 C 0.07 0.36 7.55 37.16 0.28 0.64 16
26 F -0.22 -1.86 17.36 2.25 0.04 -1.82 16
27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16
28 H 0.02 0.45 6.05 -51.93 -0.31 0.13 16
29 H 0.10 2.43 5.97 -51.93 -0.31 2.12 16
30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16
31 H 0.14 2.74 4.64 -52.48 -0.24 2.49 16
32 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16
33 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16
34 H 0.14 2.28 6.10 -52.48 -0.32 1.96 16
35 H 0.41 5.39 7.94 -40.82 -0.32 5.07 16
36 H 0.40 2.99 8.49 -40.82 -0.35 2.65 16
37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16
41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16
42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
LS Contribution 360.50 15.07 5.43 5.43
Total: -1.00 -30.14 360.50 -9.98 -40.12
By element:
Atomic # 1 Polarization: 14.37 SS G_CDS: -5.56 Total: 8.81 kcal
Atomic # 6 Polarization: -8.54 SS G_CDS: -2.98 Total: -11.53 kcal
Atomic # 7 Polarization: -40.89 SS G_CDS: 0.19 Total: -40.70 kcal
Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal
Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal
Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal
Atomic # 16 Polarization: -3.59 SS G_CDS: -2.16 Total: -5.74 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -30.14 -9.98 -40.12 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000124696583.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.352 kcal
(2) G-P(sol) polarization free energy of solvation -30.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.490 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.475 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 10.74 seconds