Wall clock time and date at job start Tue Mar 31 2020 16:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.47051 * 2 1
4 4 C 1.50697 * 109.46828 * 239.99978 * 2 1 3
5 5 H 1.08004 * 119.99956 * 240.00047 * 4 2 1
6 6 C 1.37875 * 120.00304 * 60.00767 * 4 2 1
7 7 N 1.31519 * 120.00068 * 359.97438 * 6 4 2
8 8 Si 1.86796 * 120.00457 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.47097 * 59.99585 * 8 6 4
10 10 H 1.48497 * 109.47327 * 179.97438 * 8 6 4
11 11 H 1.48504 * 109.47146 * 299.99658 * 8 6 4
12 12 S 1.81402 * 109.46829 * 120.00176 * 2 1 3
13 13 C 1.76201 * 102.99911 * 286.12591 * 12 2 1
14 14 C 1.38772 * 120.10421 * 0.12092 * 13 12 2
15 15 C 1.38208 * 119.99072 * 180.27770 * 14 13 12
16 16 C 1.38295 * 120.19324 * 359.72112 * 15 14 13
17 17 C 1.38265 * 120.20297 * 0.02562 * 16 15 14
18 18 C 1.38627 * 120.01338 * 359.97438 * 17 16 15
19 19 N 1.40191 * 120.09664 * 179.97438 * 18 17 16
20 20 C 1.34772 * 120.00213 * 33.75557 * 19 18 17
21 21 O 1.21601 * 119.99790 * 354.71266 * 20 19 18
22 22 N 1.34777 * 120.00356 * 174.72114 * 20 19 18
23 23 C 1.46497 * 120.00069 * 179.97438 * 22 20 19
24 24 C 1.53001 * 109.47154 * 179.72269 * 23 22 20
25 25 C 1.53002 * 109.47034 * 179.97438 * 24 23 22
26 26 F 1.39896 * 109.46811 * 179.97438 * 25 24 23
27 27 H 1.08997 * 109.47467 * 184.12103 * 1 2 3
28 28 H 1.08994 * 109.47257 * 304.12829 * 1 2 3
29 29 H 1.09001 * 109.46708 * 64.12225 * 1 2 3
30 30 H 0.97000 * 120.00505 * 180.02562 * 7 6 4
31 31 H 1.08006 * 120.00834 * 359.97438 * 14 13 12
32 32 H 1.07994 * 119.90882 * 179.75179 * 15 14 13
33 33 H 1.07997 * 119.89626 * 180.02562 * 16 15 14
34 34 H 1.08006 * 119.99348 * 179.97438 * 17 16 15
35 35 H 0.97007 * 119.99955 * 213.73908 * 19 18 17
36 36 H 0.97001 * 119.99797 * 359.72069 * 22 20 19
37 37 H 1.08999 * 109.47296 * 299.72771 * 23 22 20
38 38 H 1.09002 * 109.47025 * 59.72686 * 23 22 20
39 39 H 1.08999 * 109.47429 * 300.00420 * 24 23 22
40 40 H 1.09002 * 109.46815 * 60.00288 * 24 23 22
41 41 H 1.08993 * 109.47614 * 300.00116 * 25 24 23
42 42 H 1.09002 * 109.46933 * 60.00546 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1314
6 6 1.6993 -0.2393 -2.4827
7 7 0.9429 0.8298 -2.6034
8 14 2.3225 -1.1195 -4.0080
9 1 1.8279 -2.5197 -4.0082
10 1 1.8270 -0.4198 -5.2204
11 1 3.8075 -1.1190 -4.0078
12 16 2.1346 -0.8552 1.4811
13 6 1.8171 0.3068 2.7671
14 6 1.2288 1.5284 2.4717
15 6 0.9861 2.4405 3.4813
16 6 1.3226 2.1374 4.7880
17 6 1.9043 0.9205 5.0921
18 6 2.1516 -0.0006 4.0861
19 7 2.7418 -1.2348 4.3924
20 6 2.4745 -1.8362 5.5685
21 8 1.7993 -1.2657 6.4034
22 7 2.9558 -3.0699 5.8193
23 6 2.6657 -3.7233 7.0979
24 6 3.3187 -5.1068 7.1234
25 6 3.0162 -5.7890 8.4591
26 9 3.6128 -7.0541 8.4821
27 1 -0.3634 -1.0250 0.0738
28 1 -0.3633 0.5765 0.8506
29 1 -0.3633 0.4485 -0.9246
30 1 0.7083 1.1611 -3.4844
31 1 0.9651 1.7685 1.4522
32 1 0.5319 3.3924 3.2494
33 1 1.1304 2.8535 5.5733
34 1 2.1661 0.6875 6.1138
35 1 3.3424 -1.6560 3.7577
36 1 3.4912 -3.5266 5.1516
37 1 3.0631 -3.1189 7.9133
38 1 1.5872 -3.8284 7.2158
39 1 2.9213 -5.7112 6.3080
40 1 4.3972 -5.0017 7.0055
41 1 3.4140 -5.1845 9.2741
42 1 1.9377 -5.8940 8.5774
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000124696583.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:57:09
Heat of formation + Delta-G solvation = -82.359320 kcal
Electronic energy + Delta-G solvation = -24389.581407 eV
Core-core repulsion = 20602.044871 eV
Total energy + Delta-G solvation = -3787.536536 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-48.56292 -41.68179 -39.65469 -36.87073 -36.22571 -35.70024 -33.20664 -32.75871
-31.55982 -30.30956 -27.39125 -26.62728 -24.14490 -23.79627 -23.12620 -22.76706
-21.83394 -19.65891 -19.14385 -18.26310 -17.84670 -17.45771 -17.07549 -16.89642
-16.65267 -16.34633 -16.01192 -15.72622 -15.46830 -15.34922 -15.16200 -14.89665
-14.74969 -14.37474 -14.05075 -13.72196 -13.22682 -12.96317 -12.86416 -12.81553
-12.79701 -12.71656 -12.46579 -12.25542 -12.13710 -11.82046 -11.59756 -11.49142
-11.38597 -11.09363 -10.81810 -10.56248 -10.45136 -10.21824 -9.25685 -8.23586
-8.12969 -6.40660 0.28152 0.41156 0.84896 1.43144 1.43781 1.51142
1.52785 1.87294 2.00202 2.38468 2.83092 3.05592 3.06414 3.65166
3.86191 3.90869 3.95194 4.18826 4.24341 4.39777 4.40672 4.52049
4.55949 4.59049 4.60090 4.73318 4.82101 4.87494 4.93970 4.99797
5.14995 5.20808 5.30810 5.32702 5.38320 5.51966 5.57512 5.61596
5.75436 5.85688 6.02795 6.07427 6.61739 6.85022 7.26946 7.38151
8.81439
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.012367 B = 0.002868 C = 0.002381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2263.475518 B = 9760.400937 C =11758.857440
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.097 3.903
3 H 0.027 0.973
4 C -0.533 4.533
5 H 0.061 0.939
6 C 0.027 3.973
7 N -0.909 5.909
8 Si 0.967 3.033
9 H -0.270 1.270
10 H -0.280 1.280
11 H -0.269 1.269
12 S -0.166 6.166
13 C -0.113 4.113
14 C -0.134 4.134
15 C -0.117 4.117
16 C -0.110 4.110
17 C -0.116 4.116
18 C 0.161 3.839
19 N -0.674 5.674
20 C 0.704 3.296
21 O -0.608 6.608
22 N -0.730 5.730
23 C 0.141 3.859
24 C -0.156 4.156
25 C 0.061 3.939
26 F -0.235 7.235
27 H 0.034 0.966
28 H 0.034 0.966
29 H 0.074 0.926
30 H 0.269 0.731
31 H 0.119 0.881
32 H 0.148 0.852
33 H 0.156 0.844
34 H 0.143 0.857
35 H 0.415 0.585
36 H 0.412 0.588
37 H 0.074 0.926
38 H 0.066 0.934
39 H 0.083 0.917
40 H 0.089 0.911
41 H 0.095 0.905
42 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.095 -6.180 18.906 20.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.031 4.031
3 H 0.045 0.955
4 C -0.572 4.572
5 H 0.079 0.921
6 C -0.175 4.175
7 N -0.547 5.547
8 Si 0.791 3.209
9 H -0.195 1.195
10 H -0.205 1.205
11 H -0.194 1.194
12 S 0.080 5.920
13 C -0.229 4.229
14 C -0.159 4.159
15 C -0.137 4.137
16 C -0.131 4.131
17 C -0.138 4.138
18 C 0.060 3.940
19 N -0.321 5.321
20 C 0.405 3.595
21 O -0.488 6.488
22 N -0.386 5.386
23 C 0.017 3.983
24 C -0.194 4.194
25 C 0.006 3.994
26 F -0.216 7.216
27 H 0.053 0.947
28 H 0.053 0.947
29 H 0.093 0.907
30 H 0.078 0.922
31 H 0.137 0.863
32 H 0.165 0.835
33 H 0.174 0.826
34 H 0.161 0.839
35 H 0.252 0.748
36 H 0.249 0.751
37 H 0.092 0.908
38 H 0.084 0.916
39 H 0.102 0.898
40 H 0.107 0.893
41 H 0.113 0.887
42 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 3.954 -6.850 19.520 21.062
hybrid contribution 0.121 0.506 -1.889 1.959
sum 4.074 -6.344 17.631 19.176
Atomic orbital electron populations
1.21954 0.96029 0.99685 1.01248 1.20831 0.95856 0.96245 0.90174
0.95502 1.20882 1.32923 1.13409 0.89980 0.92094 1.25670 0.94706
0.95564 1.01553 1.69955 1.36347 1.23453 1.24913 0.85472 0.78878
0.78665 0.77883 1.19496 1.20461 1.19447 1.84665 1.78733 1.27240
1.01356 1.21775 1.05363 0.99777 0.95940 1.21322 1.00532 0.93420
1.00590 1.21320 1.00285 0.99679 0.92442 1.21354 0.98461 0.96473
0.96811 1.21345 1.00757 0.92599 0.99123 1.17070 0.99506 0.86158
0.91284 1.42496 1.49361 1.20725 1.19526 1.15965 0.79939 0.81971
0.81671 1.90873 1.44827 1.65949 1.47102 1.44988 1.57365 1.15337
1.20882 1.21126 1.00626 0.92335 0.84173 1.22261 1.03110 0.94919
0.99104 1.22001 0.99516 0.79336 0.98526 1.92747 1.86525 1.44560
1.97788 0.94699 0.94671 0.90711 0.92211 0.86316 0.83476 0.82589
0.83918 0.74783 0.75140 0.90803 0.91601 0.89796 0.89251 0.88657
0.89093
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.19 8.64 71.98 0.62 -5.57 16
2 C 0.10 4.78 1.97 29.85 0.06 4.84 16
3 H 0.03 1.44 6.88 -2.39 -0.02 1.43 16
4 C -0.53 -28.38 8.58 25.60 0.22 -28.16 16
5 H 0.06 3.23 7.71 -2.91 -0.02 3.21 16
6 C 0.03 1.42 5.29 84.65 0.45 1.87 16
7 N -0.91 -49.53 11.30 21.45 0.24 -49.29 16
8 Si 0.97 41.62 29.54 68.60 2.03 43.64 16
9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16
11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
12 S -0.17 -6.93 20.06 -56.49 -1.13 -8.06 16
13 C -0.11 -4.30 6.11 22.70 0.14 -4.16 16
14 C -0.13 -4.96 8.27 22.39 0.19 -4.78 16
15 C -0.12 -3.48 10.04 22.28 0.22 -3.25 16
16 C -0.11 -2.99 10.04 22.29 0.22 -2.77 16
17 C -0.12 -3.62 8.71 22.37 0.19 -3.42 16
18 C 0.16 5.46 6.34 38.20 0.24 5.70 16
19 N -0.67 -19.31 5.05 -316.67 -1.60 -20.91 16
20 C 0.70 19.05 8.42 179.06 1.51 20.56 16
21 O -0.61 -20.06 13.68 -4.03 -0.06 -20.11 16
22 N -0.73 -13.13 5.56 -478.53 -2.66 -15.79 16
23 C 0.14 1.94 5.67 86.38 0.49 2.43 16
24 C -0.16 -1.44 5.78 30.60 0.18 -1.26 16
25 C 0.06 0.55 7.55 71.98 0.54 1.09 16
26 F -0.23 -3.70 17.36 44.97 0.78 -2.92 16
27 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16
28 H 0.03 1.52 6.05 -2.39 -0.01 1.51 16
29 H 0.07 3.89 5.97 -2.39 -0.01 3.87 16
30 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16
31 H 0.12 4.84 4.64 -2.91 -0.01 4.83 16
32 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16
33 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16
34 H 0.14 4.40 6.10 -2.91 -0.02 4.39 16
35 H 0.41 10.66 7.94 -92.70 -0.74 9.92 16
36 H 0.41 5.44 8.49 -92.71 -0.79 4.65 16
37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
41 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16
42 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16
Total: -1.00 -65.31 360.50 2.42 -62.89
By element:
Atomic # 1 Polarization: 27.88 SS G_CDS: -0.46 Total: 27.43 kcal
Atomic # 6 Polarization: -22.16 SS G_CDS: 5.28 Total: -16.88 kcal
Atomic # 7 Polarization: -81.97 SS G_CDS: -4.02 Total: -85.99 kcal
Atomic # 8 Polarization: -20.06 SS G_CDS: -0.06 Total: -20.11 kcal
Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal
Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal
Atomic # 16 Polarization: -6.93 SS G_CDS: -1.13 Total: -8.06 kcal
Total: -65.31 2.42 -62.89 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000124696583.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.466 kcal
(2) G-P(sol) polarization free energy of solvation -65.314 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.780 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds