Wall clock time and date at job start Tue Mar 31 2020 15:11:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47267 * 2 1
4 4 O 1.42894 * 109.46901 * 180.02562 * 3 2 1
5 5 C 1.35985 * 117.00192 * 180.02562 * 4 3 2
6 6 C 1.38696 * 120.00300 * 179.97438 * 5 4 3
7 7 C 1.38133 * 119.99620 * 180.02562 * 6 5 4
8 8 C 1.38698 * 120.00513 * 0.02562 * 7 6 5
9 9 O 1.35979 * 120.00294 * 179.97438 * 8 7 6
10 10 C 1.42895 * 117.00348 * 179.97438 * 9 8 7
11 11 C 1.52997 * 109.47503 * 180.02562 * 10 9 8
12 12 S 1.81401 * 109.47149 * 180.02562 * 11 10 9
13 13 O 1.42104 * 109.46642 * 63.61522 * 12 11 10
14 14 C 1.81397 * 102.99785 * 179.97438 * 12 11 10
15 15 C 1.53007 * 109.47166 * 179.97438 * 14 12 11
16 16 C 1.50694 * 109.47300 * 180.02562 * 15 14 12
17 17 H 1.08006 * 120.00143 * 0.02562 * 16 15 14
18 18 C 1.37875 * 120.00120 * 180.02562 * 16 15 14
19 19 N 1.31513 * 119.99772 * 359.97438 * 18 16 15
20 20 Si 1.86798 * 120.00017 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47420 * 59.99617 * 20 18 16
22 22 H 1.48504 * 109.47394 * 179.97438 * 20 18 16
23 23 H 1.48502 * 109.47157 * 299.99516 * 20 18 16
24 24 C 1.38700 * 119.99409 * 0.25325 * 8 7 6
25 25 C 1.38128 * 120.00336 * 359.48896 * 24 8 7
26 26 H 1.09004 * 109.47307 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47136 * 300.00020 * 1 2 3
28 28 H 1.09006 * 109.47009 * 59.99714 * 1 2 3
29 29 H 1.09003 * 109.46555 * 239.99655 * 2 1 3
30 30 H 1.08999 * 109.46686 * 120.00445 * 2 1 3
31 31 H 1.08996 * 109.47058 * 59.99932 * 3 2 1
32 32 H 1.09002 * 109.46902 * 299.99922 * 3 2 1
33 33 H 1.07991 * 120.00245 * 359.97438 * 6 5 4
34 34 H 1.08001 * 119.99457 * 179.97438 * 7 6 5
35 35 H 1.09002 * 109.46880 * 60.00048 * 10 9 8
36 36 H 1.08998 * 109.47064 * 300.00873 * 10 9 8
37 37 H 1.09002 * 109.47153 * 60.00043 * 11 10 9
38 38 H 1.09001 * 109.46832 * 300.00234 * 11 10 9
39 39 H 1.09004 * 109.47371 * 299.99984 * 14 12 11
40 40 H 1.09000 * 109.47527 * 60.00229 * 14 12 11
41 41 H 1.08991 * 109.47137 * 300.00517 * 15 14 12
42 42 H 1.09000 * 109.46480 * 60.00238 * 15 14 12
43 43 H 0.97003 * 119.99657 * 179.97438 * 19 18 16
44 44 H 1.08002 * 119.99773 * 179.72890 * 24 8 7
45 45 H 1.07999 * 119.99862 * 180.22625 * 25 24 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4424 -0.0006
5 6 4.0864 2.6540 -0.0001
6 6 5.4715 2.7265 -0.0001
7 6 6.0986 3.9573 0.0009
8 6 5.3433 5.1205 0.0024
9 8 5.9606 6.3321 0.0039
10 6 5.1208 7.4882 0.0049
11 6 5.9880 8.7487 0.0059
12 16 4.9218 10.2163 0.0079
13 8 4.1622 10.2481 1.2085
14 6 6.1120 11.5852 0.0097
15 6 5.3579 12.9166 0.0109
16 6 6.3466 14.0539 0.0117
17 1 7.4068 13.8478 0.0110
18 6 5.8978 15.3575 0.0134
19 7 4.6068 15.6085 0.0137
20 14 7.1234 16.7672 0.0137
21 1 7.9755 16.6827 -1.1996
22 1 6.3916 18.0594 0.0149
23 1 7.9774 16.6804 1.2254
24 6 3.9582 5.0479 0.0083
25 6 3.3310 3.8172 0.0019
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 1.8932 -0.5139 -0.8900
30 1 1.8932 -0.5139 0.8900
31 1 1.6767 1.9563 0.8899
32 1 1.6767 1.9563 -0.8900
33 1 6.0597 1.8208 -0.0001
34 1 7.1771 4.0137 0.0013
35 1 4.4913 7.4792 0.8947
36 1 4.4917 7.4811 -0.8852
37 1 6.6173 8.7575 -0.8841
38 1 6.6173 8.7559 0.8959
39 1 6.7382 11.5211 0.8996
40 1 6.7381 11.5236 -0.8804
41 1 4.7320 12.9804 -0.8791
42 1 4.7316 12.9785 0.9008
43 1 4.2911 16.5257 0.0152
44 1 3.3700 5.9537 0.0139
45 1 2.2525 3.7608 0.0027
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000290485206.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:11:40
Heat of formation + Delta-G solvation = -107.973555 kcal
Electronic energy + Delta-G solvation = -23593.654608 eV
Core-core repulsion = 19896.174909 eV
Total energy + Delta-G solvation = -3697.479699 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 326.138 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.65136 -39.30236 -36.83718 -35.25988 -34.27203 -33.71567 -31.96199 -31.27596
-30.92974 -29.00793 -26.85294 -25.48741 -24.37412 -22.96896 -21.95309 -21.58690
-20.95873 -18.75796 -18.05910 -17.08082 -16.68130 -16.60214 -16.46434 -16.25858
-15.15007 -14.84963 -14.60950 -14.60025 -14.50407 -14.30063 -14.03234 -13.67329
-13.63637 -13.37846 -13.20417 -12.62247 -12.56010 -12.48024 -12.34564 -11.97701
-11.86887 -11.58406 -11.51622 -11.33469 -11.09889 -10.98313 -10.89223 -10.78254
-10.50437 -10.18070 -10.16586 -9.53406 -9.34263 -9.14444 -8.44084 -7.95333
-7.81603 -6.07331 -4.11782 0.99115 1.23549 1.74295 2.84332 3.05585
3.25240 3.29274 3.34129 3.36366 3.48765 4.18164 4.34777 4.39061
4.40843 4.52670 4.53191 4.71895 4.75541 4.83372 4.83956 4.93558
4.96421 5.12160 5.14140 5.23318 5.24267 5.27836 5.46207 5.56103
5.57296 5.58987 5.69145 5.78323 5.88054 5.89671 6.03520 6.08562
6.09938 6.32476 6.74630 7.05973 7.30310 7.44934 7.56271 7.87392
8.28211 8.92547 9.52584 11.03209
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.032890 B = 0.001631 C = 0.001564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 851.126655 B =17166.303071 C =17901.451394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.123 4.123
3 C 0.058 3.942
4 O -0.318 6.318
5 C 0.088 3.912
6 C -0.112 4.112
7 C -0.114 4.114
8 C 0.098 3.902
9 O -0.312 6.312
10 C 0.084 3.916
11 C -0.462 4.462
12 S 1.229 4.771
13 O -0.849 6.849
14 C -0.411 4.411
15 C 0.038 3.962
16 C -0.521 4.521
17 H 0.057 0.943
18 C 0.058 3.942
19 N -0.892 5.892
20 Si 0.896 3.104
21 H -0.275 1.275
22 H -0.286 1.286
23 H -0.277 1.277
24 C -0.170 4.170
25 C -0.167 4.167
26 H 0.064 0.936
27 H 0.058 0.942
28 H 0.058 0.942
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.061 0.939
32 H 0.061 0.939
33 H 0.136 0.864
34 H 0.138 0.862
35 H 0.064 0.936
36 H 0.073 0.927
37 H 0.123 0.877
38 H 0.090 0.910
39 H 0.074 0.926
40 H 0.108 0.892
41 H 0.030 0.970
42 H 0.023 0.977
43 H 0.263 0.737
44 H 0.134 0.866
45 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.699 -30.202 -4.995 30.971
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.161 4.161
3 C -0.017 4.017
4 O -0.233 6.233
5 C 0.044 3.956
6 C -0.131 4.131
7 C -0.133 4.133
8 C 0.053 3.947
9 O -0.227 6.227
10 C 0.009 3.991
11 C -0.596 4.596
12 S 1.428 4.572
13 O -0.844 6.844
14 C -0.551 4.551
15 C -0.001 4.001
16 C -0.561 4.561
17 H 0.075 0.925
18 C -0.144 4.144
19 N -0.531 5.531
20 Si 0.724 3.276
21 H -0.201 1.201
22 H -0.211 1.211
23 H -0.203 1.203
24 C -0.189 4.189
25 C -0.185 4.185
26 H 0.083 0.917
27 H 0.077 0.923
28 H 0.077 0.923
29 H 0.092 0.908
30 H 0.091 0.909
31 H 0.079 0.921
32 H 0.079 0.921
33 H 0.154 0.846
34 H 0.156 0.844
35 H 0.083 0.917
36 H 0.091 0.909
37 H 0.141 0.859
38 H 0.109 0.891
39 H 0.093 0.907
40 H 0.126 0.874
41 H 0.048 0.952
42 H 0.042 0.958
43 H 0.073 0.927
44 H 0.151 0.849
45 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -5.549 -30.224 -4.965 31.127
hybrid contribution 1.690 1.112 1.869 2.754
sum -3.859 -29.112 -3.097 29.530
Atomic orbital electron populations
1.21699 0.94213 1.02570 1.02324 1.21477 0.96066 0.94842 1.03676
1.22858 0.78658 0.98784 1.01425 1.86038 1.21075 1.26827 1.89324
1.18844 0.92222 0.84105 1.00463 1.20209 0.91305 0.97791 1.03775
1.20260 1.00291 0.89010 1.03728 1.18956 0.91034 0.85822 0.98895
1.86141 1.36032 1.11789 1.88719 1.22290 0.92545 0.82410 1.01901
1.28065 1.12537 1.10633 1.08340 1.70446 0.88484 0.85754 1.12482
1.93098 1.56274 1.83931 1.51091 1.27564 1.10730 1.10482 1.06304
1.18801 0.95423 0.87620 0.98213 1.21104 0.92869 0.90531 1.51570
0.92491 1.25034 0.95280 0.98977 0.95079 1.69948 1.12845 1.20229
1.50070 0.86593 0.81092 0.81281 0.78656 1.20071 1.21143 1.20292
1.21147 0.93505 0.98644 1.05561 1.21043 1.00023 0.91670 1.05814
0.91707 0.92308 0.92295 0.90837 0.90863 0.92107 0.92065 0.84590
0.84450 0.91728 0.90888 0.85870 0.89125 0.90689 0.87402 0.95217
0.95820 0.92698 0.84863 0.85252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.59 9.91 37.16 0.37 -0.23 16
2 C -0.12 -0.65 6.30 -26.73 -0.17 -0.82 16
3 C 0.06 0.39 4.74 37.16 0.18 0.57 16
4 O -0.32 -3.06 10.14 -19.69 -0.20 -3.26 16
5 C 0.09 0.91 6.69 -39.24 -0.26 0.64 16
6 C -0.11 -1.10 9.98 -39.45 -0.39 -1.49 16
7 C -0.11 -1.20 9.98 -39.45 -0.39 -1.59 16
8 C 0.10 1.17 6.69 -39.24 -0.26 0.91 16
9 O -0.31 -4.05 10.14 -19.67 -0.20 -4.25 16
10 C 0.08 1.00 4.75 37.16 0.18 1.18 16
11 C -0.46 -5.71 6.29 37.16 0.23 -5.47 16
12 S 1.23 18.36 13.16 -107.50 -1.41 16.95 16
13 O -0.85 -18.15 18.14 -35.23 -0.64 -18.79 16
14 C -0.41 -7.73 5.86 37.16 0.22 -7.51 16
15 C 0.04 0.95 4.98 -27.88 -0.14 0.81 16
16 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16
17 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16
18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
19 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16
20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16
21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16
24 C -0.17 -1.83 9.03 -39.45 -0.36 -2.19 16
25 C -0.17 -1.64 9.03 -39.45 -0.36 -1.99 16
26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16
27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16
28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16
29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16
32 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16
33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16
34 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16
35 H 0.06 0.83 7.65 -51.93 -0.40 0.43 16
36 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16
37 H 0.12 1.22 8.14 -51.92 -0.42 0.79 16
38 H 0.09 1.26 8.14 -51.92 -0.42 0.83 16
39 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16
40 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16
41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
42 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16
43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
44 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16
45 H 0.13 1.00 6.29 -52.49 -0.33 0.67 16
LS Contribution 389.47 15.07 5.87 5.87
Total: -1.00 -36.31 389.47 -9.73 -46.04
By element:
Atomic # 1 Polarization: 4.55 SS G_CDS: -7.29 Total: -2.74 kcal
Atomic # 6 Polarization: -28.87 SS G_CDS: -1.57 Total: -30.44 kcal
Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.71 kcal
Atomic # 8 Polarization: -25.26 SS G_CDS: -1.04 Total: -26.30 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal
Atomic # 16 Polarization: 18.36 SS G_CDS: -1.41 Total: 16.95 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -36.31 -9.73 -46.04 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000290485206.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.932 kcal
(2) G-P(sol) polarization free energy of solvation -36.314 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.246 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.041 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds