Wall clock time and date at job start Tue Mar 31 2020 15:11:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47267 * 2 1
4 4 O 1.42894 * 109.46901 * 180.02562 * 3 2 1
5 5 C 1.35985 * 117.00192 * 180.02562 * 4 3 2
6 6 C 1.38696 * 120.00300 * 179.97438 * 5 4 3
7 7 C 1.38133 * 119.99620 * 180.02562 * 6 5 4
8 8 C 1.38698 * 120.00513 * 0.02562 * 7 6 5
9 9 O 1.35979 * 120.00294 * 179.97438 * 8 7 6
10 10 C 1.42895 * 117.00348 * 179.97438 * 9 8 7
11 11 C 1.52997 * 109.47503 * 180.02562 * 10 9 8
12 12 S 1.81401 * 109.47149 * 180.02562 * 11 10 9
13 13 O 1.42104 * 109.46642 * 63.61522 * 12 11 10
14 14 C 1.81397 * 102.99785 * 179.97438 * 12 11 10
15 15 C 1.53007 * 109.47166 * 179.97438 * 14 12 11
16 16 C 1.50694 * 109.47300 * 180.02562 * 15 14 12
17 17 H 1.08006 * 120.00143 * 0.02562 * 16 15 14
18 18 C 1.37875 * 120.00120 * 180.02562 * 16 15 14
19 19 N 1.31513 * 119.99772 * 359.97438 * 18 16 15
20 20 Si 1.86798 * 120.00017 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47420 * 59.99617 * 20 18 16
22 22 H 1.48504 * 109.47394 * 179.97438 * 20 18 16
23 23 H 1.48502 * 109.47157 * 299.99516 * 20 18 16
24 24 C 1.38700 * 119.99409 * 0.25325 * 8 7 6
25 25 C 1.38128 * 120.00336 * 359.48896 * 24 8 7
26 26 H 1.09004 * 109.47307 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47136 * 300.00020 * 1 2 3
28 28 H 1.09006 * 109.47009 * 59.99714 * 1 2 3
29 29 H 1.09003 * 109.46555 * 239.99655 * 2 1 3
30 30 H 1.08999 * 109.46686 * 120.00445 * 2 1 3
31 31 H 1.08996 * 109.47058 * 59.99932 * 3 2 1
32 32 H 1.09002 * 109.46902 * 299.99922 * 3 2 1
33 33 H 1.07991 * 120.00245 * 359.97438 * 6 5 4
34 34 H 1.08001 * 119.99457 * 179.97438 * 7 6 5
35 35 H 1.09002 * 109.46880 * 60.00048 * 10 9 8
36 36 H 1.08998 * 109.47064 * 300.00873 * 10 9 8
37 37 H 1.09002 * 109.47153 * 60.00043 * 11 10 9
38 38 H 1.09001 * 109.46832 * 300.00234 * 11 10 9
39 39 H 1.09004 * 109.47371 * 299.99984 * 14 12 11
40 40 H 1.09000 * 109.47527 * 60.00229 * 14 12 11
41 41 H 1.08991 * 109.47137 * 300.00517 * 15 14 12
42 42 H 1.09000 * 109.46480 * 60.00238 * 15 14 12
43 43 H 0.97003 * 119.99657 * 179.97438 * 19 18 16
44 44 H 1.08002 * 119.99773 * 179.72890 * 24 8 7
45 45 H 1.07999 * 119.99862 * 180.22625 * 25 24 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4424 -0.0006
5 6 4.0864 2.6540 -0.0001
6 6 5.4715 2.7265 -0.0001
7 6 6.0986 3.9573 0.0009
8 6 5.3433 5.1205 0.0024
9 8 5.9606 6.3321 0.0039
10 6 5.1208 7.4882 0.0049
11 6 5.9880 8.7487 0.0059
12 16 4.9218 10.2163 0.0079
13 8 4.1622 10.2481 1.2085
14 6 6.1120 11.5852 0.0097
15 6 5.3579 12.9166 0.0109
16 6 6.3466 14.0539 0.0117
17 1 7.4068 13.8478 0.0110
18 6 5.8978 15.3575 0.0134
19 7 4.6068 15.6085 0.0137
20 14 7.1234 16.7672 0.0137
21 1 7.9755 16.6827 -1.1996
22 1 6.3916 18.0594 0.0149
23 1 7.9774 16.6804 1.2254
24 6 3.9582 5.0479 0.0083
25 6 3.3310 3.8172 0.0019
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 1.8932 -0.5139 -0.8900
30 1 1.8932 -0.5139 0.8900
31 1 1.6767 1.9563 0.8899
32 1 1.6767 1.9563 -0.8900
33 1 6.0597 1.8208 -0.0001
34 1 7.1771 4.0137 0.0013
35 1 4.4913 7.4792 0.8947
36 1 4.4917 7.4811 -0.8852
37 1 6.6173 8.7575 -0.8841
38 1 6.6173 8.7559 0.8959
39 1 6.7382 11.5211 0.8996
40 1 6.7381 11.5236 -0.8804
41 1 4.7320 12.9804 -0.8791
42 1 4.7316 12.9785 0.9008
43 1 4.2911 16.5257 0.0152
44 1 3.3700 5.9537 0.0139
45 1 2.2525 3.7608 0.0027
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000290485206.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:11:39
Heat of formation + Delta-G solvation = -131.573114 kcal
Electronic energy + Delta-G solvation = -23594.677961 eV
Core-core repulsion = 19896.174909 eV
Total energy + Delta-G solvation = -3698.503053 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 326.138 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.41838 -40.08567 -37.59592 -36.81348 -35.72892 -34.73668 -32.90859 -32.87051
-32.05395 -29.77226 -27.40679 -27.36597 -25.37208 -23.74745 -23.09928 -22.50761
-22.02946 -19.55175 -18.85620 -18.77795 -18.11847 -17.39072 -17.32269 -17.14792
-16.57974 -16.09311 -15.81490 -15.70267 -15.59543 -15.14003 -15.07967 -14.66173
-14.55475 -14.44743 -14.24592 -13.80921 -13.65145 -13.33211 -13.29438 -12.98819
-12.92116 -12.80120 -12.71905 -12.60149 -12.26505 -12.06068 -11.98680 -11.92840
-11.71783 -11.60468 -11.52125 -11.25275 -10.86337 -10.58522 -10.10240 -9.21168
-8.75202 -8.21263 -6.34258 0.23123 0.43315 0.48006 1.40439 1.43138
1.51281 1.76843 2.19891 2.35983 2.40437 2.70681 2.90812 3.11237
3.64587 3.80832 3.82158 3.86936 3.95472 4.02022 4.12054 4.24867
4.28785 4.29582 4.37607 4.44899 4.47474 4.55314 4.58282 4.62171
4.78809 4.85738 4.93607 5.02239 5.05127 5.12283 5.18449 5.26949
5.31516 5.36112 5.42997 5.52042 5.57135 5.77241 6.17883 6.30421
6.50469 6.80361 7.35175 8.89349
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.032890 B = 0.001631 C = 0.001564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 851.126655 B =17166.303071 C =17901.451394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.120 4.120
3 C 0.051 3.949
4 O -0.329 6.329
5 C 0.081 3.919
6 C -0.117 4.117
7 C -0.118 4.118
8 C 0.075 3.925
9 O -0.324 6.324
10 C 0.077 3.923
11 C -0.449 4.449
12 S 1.302 4.698
13 O -0.916 6.916
14 C -0.417 4.417
15 C 0.034 3.966
16 C -0.544 4.544
17 H 0.064 0.936
18 C 0.000 4.000
19 N -0.931 5.931
20 Si 0.967 3.033
21 H -0.259 1.259
22 H -0.283 1.283
23 H -0.274 1.274
24 C -0.177 4.177
25 C -0.170 4.170
26 H 0.071 0.929
27 H 0.060 0.940
28 H 0.062 0.938
29 H 0.072 0.928
30 H 0.070 0.930
31 H 0.065 0.935
32 H 0.070 0.930
33 H 0.153 0.847
34 H 0.149 0.851
35 H 0.050 0.950
36 H 0.105 0.895
37 H 0.160 0.840
38 H 0.078 0.922
39 H 0.060 0.940
40 H 0.143 0.857
41 H 0.028 0.972
42 H -0.023 1.023
43 H 0.265 0.735
44 H 0.142 0.858
45 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.824 -31.545 -6.314 32.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.158 4.158
3 C -0.024 4.024
4 O -0.244 6.244
5 C 0.036 3.964
6 C -0.135 4.135
7 C -0.137 4.137
8 C 0.030 3.970
9 O -0.239 6.239
10 C 0.001 3.999
11 C -0.585 4.585
12 S 1.502 4.498
13 O -0.912 6.912
14 C -0.556 4.556
15 C -0.004 4.004
16 C -0.583 4.583
17 H 0.082 0.918
18 C -0.198 4.198
19 N -0.571 5.571
20 Si 0.791 3.209
21 H -0.183 1.183
22 H -0.208 1.208
23 H -0.200 1.200
24 C -0.196 4.196
25 C -0.189 4.189
26 H 0.090 0.910
27 H 0.079 0.921
28 H 0.081 0.919
29 H 0.091 0.909
30 H 0.088 0.912
31 H 0.084 0.916
32 H 0.088 0.912
33 H 0.170 0.830
34 H 0.167 0.833
35 H 0.069 0.931
36 H 0.123 0.877
37 H 0.178 0.822
38 H 0.097 0.903
39 H 0.079 0.921
40 H 0.161 0.839
41 H 0.047 0.953
42 H -0.005 1.005
43 H 0.074 0.926
44 H 0.160 0.840
45 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -4.677 -31.543 -6.285 32.501
hybrid contribution 1.396 1.319 2.275 2.978
sum -3.280 -30.223 -4.010 30.664
Atomic orbital electron populations
1.21694 0.93090 1.03175 1.02611 1.21483 0.96935 0.93867 1.03496
1.23091 0.77320 0.99934 1.02046 1.86033 1.22604 1.26605 1.89189
1.19055 0.92636 0.84529 1.00135 1.20451 0.91547 0.98237 1.03288
1.20464 1.00987 0.88863 1.03360 1.19199 0.91720 0.85709 1.00406
1.86083 1.36438 1.12201 1.89219 1.22369 0.92507 0.82077 1.02917
1.27855 1.12026 1.08994 1.09664 1.69670 0.86112 0.84503 1.09499
1.92976 1.59358 1.85263 1.53565 1.27523 1.11384 1.09377 1.07303
1.18667 0.95082 0.90794 0.95866 1.21629 0.93759 0.91800 1.51154
0.91777 1.26004 0.97178 1.02046 0.94594 1.70085 1.14945 1.20891
1.51180 0.85480 0.78644 0.77591 0.79205 1.18299 1.20808 1.19965
1.21321 0.93348 0.99417 1.05505 1.21263 1.01067 0.91243 1.05326
0.90975 0.92136 0.91896 0.90914 0.91170 0.91641 0.91222 0.82952
0.83302 0.93148 0.87670 0.82183 0.90310 0.92111 0.83941 0.95343
1.00467 0.92602 0.84009 0.83428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.94 9.91 71.98 0.71 -0.23 16
2 C -0.12 -1.12 6.30 30.59 0.19 -0.93 16
3 C 0.05 0.62 4.74 71.98 0.34 0.96 16
4 O -0.33 -5.93 10.14 -93.38 -0.95 -6.88 16
5 C 0.08 1.57 6.69 22.49 0.15 1.72 16
6 C -0.12 -2.14 9.98 22.35 0.22 -1.92 16
7 C -0.12 -2.34 9.98 22.35 0.22 -2.11 16
8 C 0.07 1.69 6.69 22.49 0.15 1.84 16
9 O -0.32 -7.89 10.14 -93.32 -0.95 -8.84 16
10 C 0.08 1.69 4.75 71.98 0.34 2.03 16
11 C -0.45 -10.04 6.29 71.98 0.45 -9.59 16
12 S 1.30 37.84 13.16 -56.49 -0.74 37.09 16
13 O -0.92 -39.94 18.14 -148.98 -2.70 -42.64 16
14 C -0.42 -15.52 5.86 71.98 0.42 -15.10 16
15 C 0.03 1.76 4.98 29.85 0.15 1.91 16
16 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16
17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16
18 C 0.00 0.01 5.46 84.65 0.46 0.47 16
19 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16
20 Si 0.97 43.76 29.54 68.60 2.03 45.78 16
21 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16
22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
24 C -0.18 -3.59 9.03 22.35 0.20 -3.39 16
25 C -0.17 -3.11 9.03 22.35 0.20 -2.91 16
26 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16
27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16
28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16
29 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16
30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
31 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16
32 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16
33 H 0.15 2.17 8.06 -2.92 -0.02 2.15 16
34 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16
35 H 0.05 1.25 7.65 -2.39 -0.02 1.23 16
36 H 0.11 1.60 7.67 -2.39 -0.02 1.59 16
37 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16
38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16
40 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16
41 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16
42 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16
43 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16
44 H 0.14 2.51 6.29 -2.91 -0.02 2.49 16
45 H 0.15 2.02 6.29 -2.91 -0.02 2.00 16
Total: -1.00 -80.64 389.47 2.39 -78.25
By element:
Atomic # 1 Polarization: 9.97 SS G_CDS: 0.96 Total: 10.92 kcal
Atomic # 6 Polarization: -62.05 SS G_CDS: 4.46 Total: -57.59 kcal
Atomic # 7 Polarization: -56.39 SS G_CDS: 0.28 Total: -56.10 kcal
Atomic # 8 Polarization: -53.76 SS G_CDS: -4.59 Total: -58.36 kcal
Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal
Atomic # 16 Polarization: 37.84 SS G_CDS: -0.74 Total: 37.09 kcal
Total: -80.64 2.39 -78.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000290485206.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.323 kcal
(2) G-P(sol) polarization free energy of solvation -80.639 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.573 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds