Wall clock time and date at job start Tue Mar 31 2020 15:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47367 * 2 1 4 4 O 1.42903 * 109.47320 * 179.97438 * 3 2 1 5 5 C 1.35981 * 116.99764 * 180.02562 * 4 3 2 6 6 C 1.38705 * 119.99787 * 180.02562 * 5 4 3 7 7 C 1.38128 * 120.00001 * 180.02562 * 6 5 4 8 8 C 1.38700 * 119.99908 * 359.97438 * 7 6 5 9 9 O 1.35984 * 119.99859 * 179.97438 * 8 7 6 10 10 C 1.42894 * 116.99861 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.47141 * 179.97438 * 10 9 8 12 12 S 1.81397 * 109.47166 * 179.97438 * 11 10 9 13 13 O 1.42104 * 109.46838 * 296.38201 * 12 11 10 14 14 C 1.81401 * 102.99785 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47149 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38696 * 119.99984 * 0.25243 * 8 7 6 25 25 C 1.38129 * 120.00014 * 359.49249 * 24 8 7 26 26 H 1.09003 * 109.46997 * 60.00296 * 1 2 3 27 27 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47449 * 300.00092 * 1 2 3 29 29 H 1.08998 * 109.47449 * 239.99908 * 2 1 3 30 30 H 1.09003 * 109.46997 * 119.99704 * 2 1 3 31 31 H 1.08998 * 109.46911 * 59.99578 * 3 2 1 32 32 H 1.08994 * 109.47062 * 299.99777 * 3 2 1 33 33 H 1.07997 * 119.99485 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.99605 * 179.97438 * 7 6 5 35 35 H 1.08991 * 109.47654 * 59.99568 * 10 9 8 36 36 H 1.09000 * 109.47113 * 299.99142 * 10 9 8 37 37 H 1.09004 * 109.46969 * 59.99608 * 11 10 9 38 38 H 1.09000 * 109.46704 * 300.00112 * 11 10 9 39 39 H 1.09002 * 109.47085 * 299.99903 * 14 12 11 40 40 H 1.09001 * 109.47417 * 60.00029 * 14 12 11 41 41 H 1.09002 * 109.47153 * 299.99990 * 15 14 12 42 42 H 1.08998 * 109.47533 * 59.99620 * 15 14 12 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.08004 * 119.99894 * 179.72404 * 24 8 7 45 45 H 1.07997 * 120.00182 * 180.22320 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0863 2.6541 0.0012 6 6 5.4715 2.7267 0.0013 7 6 6.0986 3.9574 0.0025 8 6 5.3431 5.1207 0.0030 9 8 5.9605 6.3323 0.0047 10 6 5.1206 7.4883 0.0058 11 6 5.9878 8.7488 0.0082 12 16 4.9216 10.2164 0.0088 13 8 4.1629 10.2510 -1.1922 14 6 6.1117 11.5854 0.0126 15 6 5.3577 12.9166 0.0128 16 6 6.3464 14.0540 0.0165 17 1 7.4065 13.8479 0.0181 18 6 5.8975 15.3577 0.0168 19 7 4.6065 15.6086 0.0143 20 14 7.1230 16.7675 0.0222 21 1 7.4519 17.1427 -1.3765 22 1 6.5307 17.9357 0.7219 23 1 8.3608 16.3447 0.7252 24 6 3.9581 5.0480 0.0077 25 6 3.3310 3.8173 0.0012 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.0596 1.8209 0.0004 34 1 7.1771 4.0139 0.0029 35 1 4.4910 7.4792 0.8954 36 1 4.4918 7.4813 -0.8845 37 1 6.6178 8.7582 -0.8813 38 1 6.6164 8.7556 0.8987 39 1 6.7366 11.5212 0.9034 40 1 6.7392 11.5238 -0.8766 41 1 4.7332 12.9806 -0.8783 42 1 4.7299 12.9786 0.9016 43 1 4.2907 16.5258 0.0142 44 1 3.3699 5.9538 0.0127 45 1 2.2525 3.7608 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290485207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:48 Heat of formation + Delta-G solvation = -108.011855 kcal Electronic energy + Delta-G solvation = -23593.564147 eV Core-core repulsion = 19896.082787 eV Total energy + Delta-G solvation = -3697.481360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 23.87 seconds Orbital eigenvalues (eV) -40.65147 -39.30214 -36.83704 -35.26002 -34.27275 -33.71705 -31.96164 -31.27598 -30.93073 -29.00784 -26.85353 -25.48902 -24.37472 -22.96921 -21.95339 -21.58715 -20.95991 -18.75793 -18.05900 -17.08143 -16.68124 -16.60226 -16.46559 -16.26079 -15.14970 -14.84963 -14.60952 -14.60123 -14.50268 -14.30016 -14.03277 -13.67379 -13.63663 -13.37972 -13.20410 -12.62283 -12.56108 -12.48029 -12.35102 -11.97793 -11.86828 -11.58405 -11.51593 -11.33387 -11.09935 -11.00269 -10.89190 -10.76903 -10.50508 -10.17816 -10.16468 -9.53396 -9.34283 -9.13820 -8.44502 -7.95341 -7.81519 -6.07630 -4.11978 0.99115 1.23546 1.74198 2.84313 3.05548 3.25230 3.28032 3.34473 3.37219 3.48772 4.18159 4.34749 4.39054 4.40703 4.52656 4.53178 4.71911 4.75435 4.83343 4.84046 4.93546 4.96415 5.12151 5.14137 5.23295 5.24262 5.27659 5.46217 5.56098 5.57316 5.58937 5.69146 5.78322 5.88040 5.89554 6.03501 6.08568 6.09918 6.32455 6.74572 7.05943 7.30282 7.44961 7.56126 7.87324 8.28049 8.92621 9.52461 11.02952 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.032885 B = 0.001631 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.241594 B =17166.625428 C =17901.490702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.318 6.318 5 C 0.088 3.912 6 C -0.112 4.112 7 C -0.114 4.114 8 C 0.098 3.902 9 O -0.312 6.312 10 C 0.084 3.916 11 C -0.462 4.462 12 S 1.229 4.771 13 O -0.848 6.848 14 C -0.410 4.410 15 C 0.038 3.962 16 C -0.520 4.520 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.170 4.170 25 C -0.167 4.167 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.134 0.866 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -30.230 4.940 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.233 6.233 5 C 0.044 3.956 6 C -0.131 4.131 7 C -0.133 4.133 8 C 0.053 3.947 9 O -0.227 6.227 10 C 0.009 3.991 11 C -0.596 4.596 12 S 1.428 4.572 13 O -0.844 6.844 14 C -0.551 4.551 15 C -0.001 4.001 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.189 4.189 25 C -0.185 4.185 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.151 0.849 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.537 -30.254 4.914 31.147 hybrid contribution 1.680 1.123 -1.875 2.756 sum -3.857 -29.131 3.039 29.542 Atomic orbital electron populations 1.21696 0.94213 1.02571 1.02324 1.21477 0.96065 0.94842 1.03676 1.22860 0.78656 0.98786 1.01427 1.86040 1.21078 1.26821 1.89323 1.18843 0.92223 0.84106 1.00463 1.20212 0.91306 0.97792 1.03771 1.20259 1.00291 0.89011 1.03726 1.18957 0.91035 0.85822 0.98894 1.86143 1.36027 1.11789 1.88721 1.22290 0.92545 0.82411 1.01901 1.28066 1.12534 1.10630 1.08342 1.70443 0.88513 0.85768 1.12457 1.93098 1.56297 1.83934 1.51062 1.27561 1.10724 1.10477 1.06305 1.18807 0.95434 0.87640 0.98221 1.21141 0.92904 0.90519 1.51424 0.92438 1.25039 0.95278 0.98992 0.95092 1.69960 1.12834 1.20126 1.50175 0.86534 0.81222 0.81734 0.78165 1.20677 1.21037 1.19785 1.21145 0.93503 0.98642 1.05568 1.21041 1.00023 0.91670 1.05815 0.92315 0.91708 0.92289 0.90863 0.90836 0.92064 0.92106 0.84589 0.84448 0.90889 0.91725 0.89126 0.85870 0.87392 0.90694 0.95819 0.95206 0.92756 0.84861 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.15 0.37 -0.23 16 2 C -0.12 -0.65 6.30 -26.73 -0.17 -0.82 16 3 C 0.06 0.39 4.74 37.16 0.18 0.57 16 4 O -0.32 -3.06 10.14 -19.68 -0.20 -3.26 16 5 C 0.09 0.91 6.69 -39.24 -0.26 0.64 16 6 C -0.11 -1.10 9.98 -39.45 -0.39 -1.49 16 7 C -0.11 -1.20 9.98 -39.45 -0.39 -1.59 16 8 C 0.10 1.17 6.69 -39.24 -0.26 0.91 16 9 O -0.31 -4.05 10.14 -19.69 -0.20 -4.25 16 10 C 0.08 1.00 4.75 37.16 0.18 1.18 16 11 C -0.46 -5.71 6.29 37.16 0.23 -5.47 16 12 S 1.23 18.36 13.16 -107.50 -1.41 16.94 16 13 O -0.85 -18.15 18.14 -35.23 -0.64 -18.79 16 14 C -0.41 -7.73 5.86 37.16 0.22 -7.51 16 15 C 0.04 0.94 4.98 -27.89 -0.14 0.80 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.17 -1.83 9.03 -39.45 -0.36 -2.18 16 25 C -0.17 -1.64 9.03 -39.45 -0.36 -1.99 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 36 H 0.06 0.83 7.67 -51.93 -0.40 0.43 16 37 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 38 H 0.12 1.22 8.14 -51.92 -0.42 0.79 16 39 H 0.11 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.07 1.49 8.14 -51.92 -0.42 1.06 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.13 1.26 6.29 -52.48 -0.33 0.93 16 45 H 0.13 1.00 6.29 -52.49 -0.33 0.67 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -36.35 389.47 -9.73 -46.07 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.29 Total: -2.78 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -1.57 Total: -30.43 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.04 Total: -26.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 18.36 SS G_CDS: -1.41 Total: 16.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.35 -9.73 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290485207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.938 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.87 seconds