Wall clock time and date at job start Tue Mar 31 2020 15:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47367 * 2 1 4 4 O 1.42903 * 109.47320 * 179.97438 * 3 2 1 5 5 C 1.35981 * 116.99764 * 180.02562 * 4 3 2 6 6 C 1.38705 * 119.99787 * 180.02562 * 5 4 3 7 7 C 1.38128 * 120.00001 * 180.02562 * 6 5 4 8 8 C 1.38700 * 119.99908 * 359.97438 * 7 6 5 9 9 O 1.35984 * 119.99859 * 179.97438 * 8 7 6 10 10 C 1.42894 * 116.99861 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.47141 * 179.97438 * 10 9 8 12 12 S 1.81397 * 109.47166 * 179.97438 * 11 10 9 13 13 O 1.42104 * 109.46838 * 296.38201 * 12 11 10 14 14 C 1.81401 * 102.99785 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47149 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38696 * 119.99984 * 0.25243 * 8 7 6 25 25 C 1.38129 * 120.00014 * 359.49249 * 24 8 7 26 26 H 1.09003 * 109.46997 * 60.00296 * 1 2 3 27 27 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47449 * 300.00092 * 1 2 3 29 29 H 1.08998 * 109.47449 * 239.99908 * 2 1 3 30 30 H 1.09003 * 109.46997 * 119.99704 * 2 1 3 31 31 H 1.08998 * 109.46911 * 59.99578 * 3 2 1 32 32 H 1.08994 * 109.47062 * 299.99777 * 3 2 1 33 33 H 1.07997 * 119.99485 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.99605 * 179.97438 * 7 6 5 35 35 H 1.08991 * 109.47654 * 59.99568 * 10 9 8 36 36 H 1.09000 * 109.47113 * 299.99142 * 10 9 8 37 37 H 1.09004 * 109.46969 * 59.99608 * 11 10 9 38 38 H 1.09000 * 109.46704 * 300.00112 * 11 10 9 39 39 H 1.09002 * 109.47085 * 299.99903 * 14 12 11 40 40 H 1.09001 * 109.47417 * 60.00029 * 14 12 11 41 41 H 1.09002 * 109.47153 * 299.99990 * 15 14 12 42 42 H 1.08998 * 109.47533 * 59.99620 * 15 14 12 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.08004 * 119.99894 * 179.72404 * 24 8 7 45 45 H 1.07997 * 120.00182 * 180.22320 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0863 2.6541 0.0012 6 6 5.4715 2.7267 0.0013 7 6 6.0986 3.9574 0.0025 8 6 5.3431 5.1207 0.0030 9 8 5.9605 6.3323 0.0047 10 6 5.1206 7.4883 0.0058 11 6 5.9878 8.7488 0.0082 12 16 4.9216 10.2164 0.0088 13 8 4.1629 10.2510 -1.1922 14 6 6.1117 11.5854 0.0126 15 6 5.3577 12.9166 0.0128 16 6 6.3464 14.0540 0.0165 17 1 7.4065 13.8479 0.0181 18 6 5.8975 15.3577 0.0168 19 7 4.6065 15.6086 0.0143 20 14 7.1230 16.7675 0.0222 21 1 7.4519 17.1427 -1.3765 22 1 6.5307 17.9357 0.7219 23 1 8.3608 16.3447 0.7252 24 6 3.9581 5.0480 0.0077 25 6 3.3310 3.8173 0.0012 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.0596 1.8209 0.0004 34 1 7.1771 4.0139 0.0029 35 1 4.4910 7.4792 0.8954 36 1 4.4918 7.4813 -0.8845 37 1 6.6178 8.7582 -0.8813 38 1 6.6164 8.7556 0.8987 39 1 6.7366 11.5212 0.9034 40 1 6.7392 11.5238 -0.8766 41 1 4.7332 12.9806 -0.8783 42 1 4.7299 12.9786 0.9016 43 1 4.2907 16.5258 0.0142 44 1 3.3699 5.9538 0.0127 45 1 2.2525 3.7608 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290485207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:43 Heat of formation + Delta-G solvation = -131.638786 kcal Electronic energy + Delta-G solvation = -23594.588688 eV Core-core repulsion = 19896.082787 eV Total energy + Delta-G solvation = -3698.505900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -41.41811 -40.08514 -37.59544 -36.81324 -35.73029 -34.73715 -32.90789 -32.87122 -32.05364 -29.77181 -27.40886 -27.36643 -25.37224 -23.74759 -23.09980 -22.50777 -22.02936 -19.55126 -18.85600 -18.78100 -18.11932 -17.38893 -17.32407 -17.14821 -16.57777 -16.09257 -15.81666 -15.70157 -15.59540 -15.14035 -15.07984 -14.66173 -14.55507 -14.44933 -14.25149 -13.80843 -13.65042 -13.33103 -13.29225 -12.99604 -12.92249 -12.82889 -12.71740 -12.58102 -12.26458 -12.06096 -11.99267 -11.91500 -11.71757 -11.60463 -11.51226 -11.25274 -10.86045 -10.59594 -10.10222 -9.21042 -8.75175 -8.21577 -6.34448 0.23165 0.43352 0.47933 1.40351 1.41294 1.52735 1.76867 2.19913 2.36004 2.40219 2.70728 2.90848 3.11053 3.64606 3.80930 3.82045 3.87037 3.95486 4.02029 4.12076 4.24890 4.28738 4.29595 4.37621 4.44926 4.47572 4.55317 4.58326 4.62181 4.78821 4.85755 4.93638 5.02209 5.05164 5.12306 5.18465 5.26972 5.31531 5.36139 5.43139 5.51936 5.57150 5.77254 6.17767 6.30425 6.50478 6.80429 7.35030 8.89271 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.032885 B = 0.001631 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.241594 B =17166.625428 C =17901.490702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.051 3.949 4 O -0.329 6.329 5 C 0.081 3.919 6 C -0.117 4.117 7 C -0.118 4.118 8 C 0.075 3.925 9 O -0.324 6.324 10 C 0.077 3.923 11 C -0.449 4.449 12 S 1.302 4.698 13 O -0.916 6.916 14 C -0.417 4.417 15 C 0.034 3.966 16 C -0.543 4.543 17 H 0.064 0.936 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.280 1.280 22 H -0.278 1.278 23 H -0.258 1.258 24 C -0.177 4.177 25 C -0.170 4.170 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.060 0.940 41 H -0.023 1.023 42 H 0.028 0.972 43 H 0.265 0.735 44 H 0.142 0.858 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 -31.578 6.247 32.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.024 4.024 4 O -0.244 6.244 5 C 0.036 3.964 6 C -0.135 4.135 7 C -0.137 4.137 8 C 0.030 3.970 9 O -0.239 6.239 10 C 0.001 3.999 11 C -0.585 4.585 12 S 1.502 4.498 13 O -0.912 6.912 14 C -0.556 4.556 15 C -0.004 4.004 16 C -0.582 4.582 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.571 5.571 20 Si 0.791 3.209 21 H -0.206 1.206 22 H -0.204 1.204 23 H -0.182 1.182 24 C -0.196 4.196 25 C -0.189 4.189 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.079 0.921 41 H -0.005 1.005 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.671 -31.579 6.221 32.523 hybrid contribution 1.387 1.334 -2.278 2.982 sum -3.284 -30.245 3.942 30.678 Atomic orbital electron populations 1.21691 0.93090 1.03176 1.02612 1.21482 0.96935 0.93868 1.03496 1.23092 0.77318 0.99936 1.02048 1.86035 1.22607 1.26601 1.89189 1.19055 0.92637 0.84530 1.00134 1.20453 0.91548 0.98238 1.03288 1.20463 1.00986 0.88865 1.03360 1.19201 0.91726 0.85708 1.00409 1.86085 1.36435 1.12201 1.89222 1.22370 0.92508 0.82078 1.02915 1.27856 1.12022 1.08991 1.09668 1.69670 0.86143 0.84513 1.09474 1.92976 1.59379 1.85262 1.53542 1.27521 1.11374 1.09369 1.07312 1.18672 0.95097 0.90810 0.95870 1.21658 0.93767 0.91788 1.51001 0.91769 1.26006 0.97174 1.02055 0.94617 1.70093 1.14931 1.20842 1.51269 0.85425 0.79126 0.78175 0.78189 1.20601 1.20358 1.18177 1.21321 0.93343 0.99418 1.05500 1.21261 1.01069 0.91247 1.05331 0.92141 0.90977 0.91889 0.91170 0.90915 0.91220 0.91641 0.82955 0.83304 0.87666 0.93150 0.90309 0.82186 0.83939 0.92102 1.00460 0.95333 0.92603 0.83989 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.12 -1.12 6.30 30.59 0.19 -0.93 16 3 C 0.05 0.62 4.74 71.98 0.34 0.96 16 4 O -0.33 -5.93 10.14 -93.34 -0.95 -6.88 16 5 C 0.08 1.57 6.69 22.49 0.15 1.72 16 6 C -0.12 -2.14 9.98 22.36 0.22 -1.92 16 7 C -0.12 -2.34 9.98 22.35 0.22 -2.11 16 8 C 0.07 1.68 6.69 22.49 0.15 1.83 16 9 O -0.32 -7.89 10.14 -93.37 -0.95 -8.84 16 10 C 0.08 1.69 4.75 71.98 0.34 2.03 16 11 C -0.45 -10.04 6.29 71.98 0.45 -9.59 16 12 S 1.30 37.82 13.16 -56.49 -0.74 37.07 16 13 O -0.92 -39.92 18.14 -148.98 -2.70 -42.63 16 14 C -0.42 -15.51 5.86 71.98 0.42 -15.09 16 15 C 0.03 1.74 4.98 29.85 0.15 1.89 16 16 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 17 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 19 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 20 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 C -0.18 -3.59 9.03 22.35 0.20 -3.39 16 25 C -0.17 -3.11 9.03 22.35 0.20 -2.91 16 26 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 32 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.11 1.60 7.65 -2.39 -0.02 1.58 16 36 H 0.05 1.25 7.67 -2.39 -0.02 1.23 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 41 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 42 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.14 2.50 6.29 -2.91 -0.02 2.48 16 45 H 0.15 2.02 6.29 -2.91 -0.02 2.00 16 Total: -1.00 -80.68 389.47 2.39 -78.30 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.96 Total: 10.81 kcal Atomic # 6 Polarization: -61.99 SS G_CDS: 4.46 Total: -57.53 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.11 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -4.60 Total: -58.34 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 37.82 SS G_CDS: -0.74 Total: 37.07 kcal Total: -80.68 2.39 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290485207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.343 kcal (2) G-P(sol) polarization free energy of solvation -80.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds