Wall clock time and date at job start Tue Mar 31 2020 17:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 C 1.46506 * 120.00140 * 84.99626 * 3 2 1 5 5 C 1.50699 * 109.46888 * 275.00025 * 4 3 2 6 6 H 1.08002 * 120.00516 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 180.27458 * 7 5 4 10 10 H 1.48503 * 109.47407 * 269.72718 * 9 7 5 11 11 H 1.48505 * 109.47281 * 29.72474 * 9 7 5 12 12 H 1.48501 * 109.47274 * 149.72572 * 9 7 5 13 13 S 1.65600 * 119.99832 * 264.99623 * 3 2 1 14 14 O 1.42101 * 106.40272 * 23.54334 * 13 3 2 15 15 O 1.42100 * 106.40363 * 156.45976 * 13 3 2 16 16 N 1.65600 * 107.21852 * 269.99803 * 13 3 2 17 17 C 1.46502 * 119.99612 * 65.00036 * 16 13 3 18 18 C 1.53001 * 109.46812 * 165.00086 * 17 16 13 19 19 H 1.08998 * 110.67832 * 51.76342 * 18 17 16 20 20 C 1.54894 * 110.75526 * 175.00332 * 18 17 16 21 21 C 1.54265 * 104.19497 * 156.25583 * 20 18 17 22 22 C 1.53869 * 106.59924 * 336.38768 * 21 20 18 23 23 F 1.39900 * 110.03167 * 119.28963 * 22 21 20 24 24 F 1.39907 * 110.03169 * 240.71685 * 22 21 20 25 25 C 1.54266 * 106.60248 * 359.97438 * 22 21 20 26 26 H 1.09002 * 109.47213 * 300.00423 * 1 2 3 27 27 H 1.09005 * 109.46415 * 60.00107 * 1 2 3 28 28 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47074 * 239.99662 * 2 1 3 30 30 H 1.09004 * 109.46994 * 119.99398 * 2 1 3 31 31 H 1.09001 * 109.46452 * 155.00283 * 4 3 2 32 32 H 1.08997 * 109.46855 * 35.00201 * 4 3 2 33 33 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00224 * 244.99656 * 16 13 3 35 35 H 1.09002 * 109.47433 * 284.99840 * 17 16 13 36 36 H 1.09004 * 109.47449 * 45.00197 * 17 16 13 37 37 H 1.09007 * 110.48226 * 274.93388 * 20 18 17 38 38 H 1.08997 * 110.49167 * 37.57270 * 20 18 17 39 39 H 1.09004 * 110.03122 * 95.67211 * 21 20 18 40 40 H 1.09005 * 110.02727 * 217.04974 * 21 20 18 41 41 H 1.09001 * 110.48754 * 264.93594 * 25 22 21 42 42 H 1.08992 * 110.48727 * 142.28746 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8360 2.7289 1.6355 6 1 -0.0226 2.5949 0.9941 7 6 0.7223 3.4674 2.7943 8 7 1.7679 3.6309 3.5750 9 14 -0.9186 4.2297 3.2588 10 1 -1.0115 5.5946 2.6812 11 1 -2.0225 3.3909 2.7267 12 1 -1.0263 4.3096 4.7377 13 16 2.4123 2.1201 -1.4287 14 8 1.6870 1.4414 -2.4448 15 8 2.3059 3.5185 -1.1999 16 7 4.0146 1.8136 -1.7136 17 6 4.4658 0.4411 -1.9567 18 6 5.8755 0.4655 -2.5508 19 1 6.5409 1.0741 -1.9384 20 6 6.4317 -0.9720 -2.7036 21 6 7.4971 -0.8496 -3.8126 22 6 7.1250 0.3901 -4.6446 23 9 8.1603 1.3297 -4.5939 24 9 6.8772 0.0204 -5.9710 25 6 5.8461 0.9775 -4.0127 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.9080 2.8919 1.1512 32 1 2.4689 1.4183 2.0481 33 1 1.6880 4.1508 4.3901 34 1 4.6543 2.5427 -1.7197 35 1 4.4774 -0.1095 -1.0160 36 1 3.7856 -0.0468 -2.6549 37 1 6.8879 -1.3056 -1.7715 38 1 5.6405 -1.6569 -3.0086 39 1 8.4843 -0.7191 -3.3692 40 1 7.4852 -1.7398 -4.4416 41 1 4.9606 0.6074 -4.5294 42 1 5.8749 2.0668 -4.0355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337187964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:28 Heat of formation + Delta-G solvation = -196.157267 kcal Electronic energy + Delta-G solvation = -26955.868736 eV Core-core repulsion = 22732.628326 eV Total energy + Delta-G solvation = -4223.240410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 8.50 seconds Orbital eigenvalues (eV) -49.13898 -47.21399 -38.43960 -36.63374 -36.06393 -35.17571 -34.51626 -32.60165 -29.84079 -29.57006 -28.70093 -26.76118 -24.49727 -22.80330 -21.88989 -21.29931 -20.92217 -18.92802 -17.89107 -17.27583 -16.97971 -16.76741 -16.39715 -16.32622 -15.85269 -15.10951 -14.95414 -14.59752 -14.32217 -13.95376 -13.79375 -13.64863 -13.55325 -13.22042 -13.00296 -12.94072 -12.31480 -12.18843 -12.13905 -12.00407 -11.82443 -11.61597 -11.50435 -11.45513 -11.27259 -11.08727 -11.03199 -11.00608 -10.96227 -10.91781 -10.47617 -10.41014 -9.92242 -9.65229 -9.35925 -8.43964 -8.11836 -6.06758 -4.09661 1.20217 3.32155 3.38330 3.40524 3.43915 3.47715 3.62423 3.84754 4.03399 4.12596 4.44427 4.61988 4.63526 4.78073 4.87069 4.96435 5.03928 5.07830 5.27349 5.28981 5.35931 5.39483 5.46289 5.52761 5.63444 5.70220 5.80573 5.85369 5.91973 6.05043 6.14308 6.39262 6.68151 6.97374 7.06026 7.24342 7.41695 7.62248 7.91225 8.20855 8.92474 9.55137 11.01994 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.003084 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.883760 B = 9076.038531 C = 9270.348757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.134 3.866 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 S 2.779 3.221 14 O -0.996 6.996 15 O -0.964 6.964 16 N -1.136 6.136 17 C 0.129 3.871 18 C -0.097 4.097 19 H 0.096 0.904 20 C -0.116 4.116 21 C -0.163 4.163 22 C 0.279 3.721 23 F -0.199 7.199 24 F -0.201 7.201 25 C -0.160 4.160 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.282 -11.657 -11.839 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 N -0.835 5.835 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.212 1.212 13 S 2.787 3.213 14 O -0.979 6.979 15 O -0.948 6.948 16 N -0.895 5.895 17 C 0.002 3.998 18 C -0.117 4.117 19 H 0.114 0.886 20 C -0.154 4.154 21 C -0.201 4.201 22 C 0.243 3.757 23 F -0.181 7.181 24 F -0.182 7.182 25 C -0.198 4.198 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.245 0.755 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.646 -11.215 -12.256 19.731 hybrid contribution -0.170 0.719 0.445 0.862 sum 10.476 -10.497 -11.810 18.958 Atomic orbital electron populations 1.22258 0.96340 1.00834 1.03736 1.20974 0.94978 0.82336 1.00919 1.57756 1.78374 1.22980 1.24365 1.19041 0.97505 0.90910 0.78876 1.21531 0.96388 1.31828 1.06733 0.91903 1.24931 0.96843 0.96033 0.96252 1.69917 1.29313 1.40635 1.13713 0.86550 0.83915 0.79942 0.77350 1.20484 1.19795 1.21223 1.02019 0.72751 0.73386 0.73119 1.93535 1.70417 1.76503 1.57484 1.93647 1.85116 1.30427 1.85589 1.56293 1.29913 1.14135 1.89149 1.21185 0.94720 0.83311 1.00535 1.22342 0.97261 0.97143 0.94977 0.88607 1.22378 0.97887 0.96556 0.98587 1.23165 1.01852 0.96696 0.98370 1.21899 0.86748 0.87965 0.79122 1.93020 1.61184 1.67476 1.96372 1.93016 1.94573 1.91962 1.38642 1.23494 0.96168 1.03325 0.96788 0.90255 0.92814 0.93112 0.92285 0.91087 0.94551 0.94747 0.92755 0.75467 0.91124 0.90282 0.89600 0.89910 0.88691 0.88649 0.87789 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.83 37.16 0.37 -2.58 16 2 C 0.13 2.18 6.09 -4.04 -0.02 2.16 16 3 N -0.99 -19.33 2.86 -115.66 -0.33 -19.66 16 4 C 0.26 6.20 5.12 -5.19 -0.03 6.17 16 5 C -0.53 -14.27 8.41 -34.44 -0.29 -14.56 16 6 H 0.06 1.71 6.89 -52.49 -0.36 1.35 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 S 2.78 52.08 6.05 -107.50 -0.65 51.43 16 14 O -1.00 -19.60 16.58 -57.17 -0.95 -20.55 16 15 O -0.96 -22.43 17.11 -57.17 -0.98 -23.41 16 16 N -1.14 -15.06 5.98 -10.61 -0.06 -15.13 16 17 C 0.13 1.31 5.68 -4.04 -0.02 1.28 16 18 C -0.10 -0.78 2.94 -88.61 -0.26 -1.04 16 19 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.12 -0.70 6.27 -25.07 -0.16 -0.86 16 21 C -0.16 -1.07 6.50 -25.62 -0.17 -1.24 16 22 C 0.28 2.58 2.57 -25.62 -0.07 2.52 16 23 F -0.20 -2.18 17.04 2.25 0.04 -2.14 16 24 F -0.20 -2.19 17.04 2.25 0.04 -2.15 16 25 C -0.16 -1.43 5.77 -25.05 -0.14 -1.57 16 26 H 0.08 1.54 6.59 -51.93 -0.34 1.20 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.80 7.61 -51.93 -0.40 0.40 16 30 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 31 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 32 H 0.03 0.84 8.00 -51.93 -0.42 0.42 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.41 4.85 8.65 -34.47 -0.30 4.55 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.80 7.60 -51.93 -0.39 0.40 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.44 8.05 -51.93 -0.42 0.03 16 39 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16 40 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 41 H 0.10 0.93 7.91 -51.93 -0.41 0.52 16 42 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -33.54 361.54 -8.97 -42.51 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.35 Total: 0.17 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.89 Total: -8.10 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.34 Total: -59.76 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.93 Total: -43.96 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.08 Total: -4.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.65 Total: 51.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.54 -8.97 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337187964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.648 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.50 seconds