Wall clock time and date at job start Tue Mar 31 2020 17:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 C 1.46506 * 120.00140 * 84.99626 * 3 2 1 5 5 C 1.50699 * 109.46888 * 275.00025 * 4 3 2 6 6 H 1.08002 * 120.00516 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 180.27458 * 7 5 4 10 10 H 1.48503 * 109.47407 * 269.72718 * 9 7 5 11 11 H 1.48505 * 109.47281 * 29.72474 * 9 7 5 12 12 H 1.48501 * 109.47274 * 149.72572 * 9 7 5 13 13 S 1.65600 * 119.99832 * 264.99623 * 3 2 1 14 14 O 1.42101 * 106.40272 * 23.54334 * 13 3 2 15 15 O 1.42100 * 106.40363 * 156.45976 * 13 3 2 16 16 N 1.65600 * 107.21852 * 269.99803 * 13 3 2 17 17 C 1.46502 * 119.99612 * 65.00036 * 16 13 3 18 18 C 1.53001 * 109.46812 * 165.00086 * 17 16 13 19 19 H 1.08998 * 110.67832 * 51.76342 * 18 17 16 20 20 C 1.54894 * 110.75526 * 175.00332 * 18 17 16 21 21 C 1.54265 * 104.19497 * 156.25583 * 20 18 17 22 22 C 1.53869 * 106.59924 * 336.38768 * 21 20 18 23 23 F 1.39900 * 110.03167 * 119.28963 * 22 21 20 24 24 F 1.39907 * 110.03169 * 240.71685 * 22 21 20 25 25 C 1.54266 * 106.60248 * 359.97438 * 22 21 20 26 26 H 1.09002 * 109.47213 * 300.00423 * 1 2 3 27 27 H 1.09005 * 109.46415 * 60.00107 * 1 2 3 28 28 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47074 * 239.99662 * 2 1 3 30 30 H 1.09004 * 109.46994 * 119.99398 * 2 1 3 31 31 H 1.09001 * 109.46452 * 155.00283 * 4 3 2 32 32 H 1.08997 * 109.46855 * 35.00201 * 4 3 2 33 33 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00224 * 244.99656 * 16 13 3 35 35 H 1.09002 * 109.47433 * 284.99840 * 17 16 13 36 36 H 1.09004 * 109.47449 * 45.00197 * 17 16 13 37 37 H 1.09007 * 110.48226 * 274.93388 * 20 18 17 38 38 H 1.08997 * 110.49167 * 37.57270 * 20 18 17 39 39 H 1.09004 * 110.03122 * 95.67211 * 21 20 18 40 40 H 1.09005 * 110.02727 * 217.04974 * 21 20 18 41 41 H 1.09001 * 110.48754 * 264.93594 * 25 22 21 42 42 H 1.08992 * 110.48727 * 142.28746 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8360 2.7289 1.6355 6 1 -0.0226 2.5949 0.9941 7 6 0.7223 3.4674 2.7943 8 7 1.7679 3.6309 3.5750 9 14 -0.9186 4.2297 3.2588 10 1 -1.0115 5.5946 2.6812 11 1 -2.0225 3.3909 2.7267 12 1 -1.0263 4.3096 4.7377 13 16 2.4123 2.1201 -1.4287 14 8 1.6870 1.4414 -2.4448 15 8 2.3059 3.5185 -1.1999 16 7 4.0146 1.8136 -1.7136 17 6 4.4658 0.4411 -1.9567 18 6 5.8755 0.4655 -2.5508 19 1 6.5409 1.0741 -1.9384 20 6 6.4317 -0.9720 -2.7036 21 6 7.4971 -0.8496 -3.8126 22 6 7.1250 0.3901 -4.6446 23 9 8.1603 1.3297 -4.5939 24 9 6.8772 0.0204 -5.9710 25 6 5.8461 0.9775 -4.0127 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.9080 2.8919 1.1512 32 1 2.4689 1.4183 2.0481 33 1 1.6880 4.1508 4.3901 34 1 4.6543 2.5427 -1.7197 35 1 4.4774 -0.1095 -1.0160 36 1 3.7856 -0.0468 -2.6549 37 1 6.8879 -1.3056 -1.7715 38 1 5.6405 -1.6569 -3.0086 39 1 8.4843 -0.7191 -3.3692 40 1 7.4852 -1.7398 -4.4416 41 1 4.9606 0.6074 -4.5294 42 1 5.8749 2.0668 -4.0355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337187964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:27 Heat of formation + Delta-G solvation = -219.631551 kcal Electronic energy + Delta-G solvation = -26956.886658 eV Core-core repulsion = 22732.628326 eV Total energy + Delta-G solvation = -4224.258332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.91099 -48.00564 -39.13457 -38.21439 -37.65608 -36.79771 -35.46690 -34.61460 -31.39380 -30.27589 -29.38937 -28.64442 -25.28990 -24.63998 -23.36594 -21.93128 -21.63595 -20.26840 -18.77749 -18.67056 -18.48157 -18.18223 -17.55919 -17.32114 -17.06043 -16.59283 -15.98750 -15.70860 -15.29361 -15.23267 -14.79865 -14.67038 -14.63078 -14.39787 -14.31332 -13.99510 -13.78057 -13.63380 -13.38610 -13.11309 -13.10213 -12.96402 -12.83827 -12.78829 -12.76667 -12.59666 -12.27126 -12.21392 -12.12317 -11.92768 -11.66437 -11.61282 -11.54870 -11.43909 -10.55829 -10.41847 -9.78088 -8.16651 -6.25607 -0.27112 1.39502 1.42418 1.50838 2.10143 2.42666 2.68377 2.79674 2.99037 3.14910 3.20186 3.38239 3.51980 3.95500 4.00123 4.05112 4.12378 4.29418 4.38594 4.41933 4.51358 4.58681 4.62246 4.71228 4.76280 4.81024 4.94003 4.94478 5.02041 5.10459 5.21463 5.22226 5.26566 5.36248 5.51761 5.61601 5.77630 5.94328 6.14691 6.20647 6.82534 7.42099 8.90943 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.003084 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.883760 B = 9076.038531 C = 9270.348757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 N -0.996 5.996 4 C 0.274 3.726 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.948 3.052 10 H -0.282 1.282 11 H -0.266 1.266 12 H -0.276 1.276 13 S 2.794 3.206 14 O -1.006 7.006 15 O -1.017 7.017 16 N -1.122 6.122 17 C 0.119 3.881 18 C -0.091 4.091 19 H 0.101 0.899 20 C -0.109 4.109 21 C -0.157 4.157 22 C 0.268 3.732 23 F -0.212 7.212 24 F -0.213 7.213 25 C -0.165 4.165 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.014 0.986 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.421 0.579 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.714 -13.664 -11.946 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.001 4.001 3 N -0.837 5.837 4 C 0.150 3.850 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.774 3.226 10 H -0.209 1.209 11 H -0.190 1.190 12 H -0.201 1.201 13 S 2.803 3.197 14 O -0.989 6.989 15 O -1.001 7.001 16 N -0.885 5.885 17 C -0.006 4.006 18 C -0.111 4.111 19 H 0.119 0.881 20 C -0.147 4.147 21 C -0.194 4.194 22 C 0.233 3.767 23 F -0.193 7.193 24 F -0.194 7.194 25 C -0.203 4.203 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.032 0.968 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.066 -13.245 -12.375 21.237 hybrid contribution -0.259 1.293 0.378 1.372 sum 10.807 -11.952 -11.997 20.089 Atomic orbital electron populations 1.22247 0.97119 1.02461 1.01367 1.21307 0.94462 0.80889 1.03436 1.57622 1.79256 1.24081 1.22758 1.18588 0.95367 0.90479 0.80542 1.21885 0.97474 1.31848 1.06582 0.92722 1.25672 0.99892 0.96678 0.96481 1.69999 1.30890 1.41468 1.14156 0.85702 0.80557 0.78814 0.77525 1.20855 1.19006 1.20114 1.01305 0.73718 0.71972 0.72727 1.93515 1.71615 1.76326 1.57484 1.93572 1.86455 1.33837 1.86194 1.55827 1.27997 1.16175 1.88525 1.21540 0.95999 0.81257 1.01841 1.22308 0.96024 0.98860 0.93949 0.88094 1.22409 0.97977 0.95077 0.99227 1.23181 1.02503 0.95557 0.98206 1.22290 0.86586 0.88975 0.78886 1.92992 1.61743 1.68216 1.96397 1.92989 1.94654 1.92060 1.39745 1.23536 0.96096 1.03007 0.97669 0.93220 0.94466 0.89549 0.88856 0.89367 0.96755 0.95072 0.92591 0.74429 0.89320 0.89842 0.87727 0.88794 0.87794 0.87512 0.87936 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.67 9.83 71.98 0.71 -4.96 16 2 C 0.12 3.77 6.09 86.38 0.53 4.30 16 3 N -1.00 -38.15 2.86 -519.84 -1.48 -39.63 16 4 C 0.27 13.24 5.12 85.63 0.44 13.68 16 5 C -0.54 -29.62 8.41 25.60 0.22 -29.40 16 6 H 0.05 3.03 6.89 -2.91 -0.02 3.01 16 7 C 0.01 0.66 5.46 84.66 0.46 1.13 16 8 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 S 2.79 103.73 6.05 -56.49 -0.34 103.39 16 14 O -1.01 -38.61 16.58 -128.00 -2.12 -40.73 16 15 O -1.02 -48.38 17.11 -128.00 -2.19 -50.57 16 16 N -1.12 -28.35 5.98 -187.48 -1.12 -29.47 16 17 C 0.12 2.09 5.68 86.38 0.49 2.58 16 18 C -0.09 -1.23 2.94 -9.49 -0.03 -1.25 16 19 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.11 -0.93 6.27 31.67 0.20 -0.73 16 21 C -0.16 -1.64 6.50 31.32 0.20 -1.44 16 22 C 0.27 4.61 2.57 31.32 0.08 4.69 16 23 F -0.21 -4.48 17.04 44.97 0.77 -3.71 16 24 F -0.21 -4.47 17.04 44.97 0.77 -3.70 16 25 C -0.17 -2.73 5.77 31.68 0.18 -2.55 16 26 H 0.05 1.91 6.59 -2.39 -0.02 1.89 16 27 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.21 7.61 -2.39 -0.02 2.19 16 30 H 0.09 2.39 8.00 -2.38 -0.02 2.37 16 31 H 0.01 0.76 7.61 -2.39 -0.02 0.74 16 32 H 0.03 1.52 8.00 -2.39 -0.02 1.50 16 33 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 34 H 0.42 9.55 8.65 -96.75 -0.84 8.72 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.43 7.60 -2.38 -0.02 1.42 16 37 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.09 0.63 8.05 -2.39 -0.02 0.61 16 39 H 0.10 0.93 8.02 -2.39 -0.02 0.91 16 40 H 0.11 0.91 8.02 -2.38 -0.02 0.89 16 41 H 0.10 1.71 7.91 -2.39 -0.02 1.69 16 42 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 Total: -1.00 -73.18 361.54 0.26 -72.93 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.19 Total: 12.22 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.48 Total: -13.95 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -2.32 Total: -122.29 kcal Atomic # 8 Polarization: -86.98 SS G_CDS: -4.31 Total: -91.30 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 1.53 Total: -7.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 103.73 SS G_CDS: -0.34 Total: 103.39 kcal Total: -73.18 0.26 -72.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337187964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.705 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds