Wall clock time and date at job start Tue Mar 31 2020 16:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 N 1.65609 * 107.21523 * 89.99672 * 14 12 2 18 18 C 1.46918 * 120.63386 * 269.72691 * 17 14 12 19 19 C 1.53622 * 108.54502 * 126.37066 * 18 17 14 20 20 C 1.53033 * 109.24305 * 54.85535 * 19 18 17 21 21 H 1.08996 * 109.46402 * 58.53360 * 20 19 18 22 22 C 1.52999 * 109.45137 * 178.50051 * 20 19 18 23 23 C 1.53041 * 109.53849 * 298.51172 * 20 19 18 24 24 F 1.39899 * 109.49815 * 301.41544 * 23 20 19 25 25 F 1.39896 * 109.49929 * 181.31814 * 23 20 19 26 26 C 1.46927 * 120.62676 * 90.00565 * 17 14 12 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 32 32 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 33 33 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 34 34 H 1.09006 * 109.58322 * 246.20242 * 18 17 14 35 35 H 1.09005 * 109.58665 * 6.61987 * 18 17 14 36 36 H 1.09002 * 109.63061 * 294.85712 * 19 18 17 37 37 H 1.09005 * 109.45539 * 174.74006 * 19 18 17 38 38 H 1.09000 * 109.47659 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.46695 * 300.06042 * 22 20 19 40 40 H 1.09000 * 109.47426 * 60.05348 * 22 20 19 41 41 H 1.09004 * 109.58706 * 353.37113 * 26 17 14 42 42 H 1.09002 * 109.58620 * 113.65299 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.4421 2.1684 3.1946 19 6 -0.0896 2.1290 3.3058 20 6 -0.4821 1.5026 4.6457 21 1 -0.0502 2.0852 5.4594 22 6 -2.0064 1.4950 4.7775 23 6 0.0424 0.0664 4.7125 24 9 -0.4867 -0.6739 3.6500 25 9 -0.3426 -0.5154 5.9251 26 6 1.5711 0.0804 4.6147 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1612 -3.4844 31 1 2.4157 -2.7377 0.9718 32 1 1.6238 -2.2851 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 1.8494 2.8337 3.9561 35 1 1.7291 2.5235 2.2048 36 1 -0.5007 1.5328 2.4910 37 1 -0.4840 3.1436 3.2490 38 1 -2.2865 1.0494 5.7320 39 1 -2.3802 2.5178 4.7300 40 1 -2.4386 0.9121 3.9642 41 1 1.9433 -0.9428 4.5621 42 1 1.9909 0.5774 5.4893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337847737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:43 Heat of formation + Delta-G solvation = -176.060124 kcal Electronic energy + Delta-G solvation = -29099.612077 eV Core-core repulsion = 24877.243144 eV Total energy + Delta-G solvation = -4222.368933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 6.28 seconds Orbital eigenvalues (eV) -48.96971 -46.92546 -38.16095 -36.84360 -36.15335 -35.32635 -33.90765 -32.57961 -30.57519 -29.07005 -27.86793 -25.59284 -25.14088 -23.57795 -23.04585 -20.94852 -20.30247 -18.74732 -17.64219 -17.09207 -16.91338 -16.68315 -16.61984 -16.26786 -15.54546 -14.99061 -14.45705 -14.19434 -13.77575 -13.73173 -13.51028 -13.40044 -13.25982 -13.11197 -12.98656 -12.80622 -12.67349 -12.27874 -12.02082 -11.87502 -11.76832 -11.69839 -11.56129 -11.40303 -11.27093 -11.10938 -10.96224 -10.78435 -10.77402 -10.65529 -10.33009 -10.27132 -10.01195 -9.27153 -9.06697 -8.45799 -7.96063 -6.07677 -4.13783 1.02668 3.21078 3.28628 3.35518 3.40228 3.62818 3.86405 4.02368 4.26032 4.29790 4.40249 4.65804 4.82450 4.93877 5.03630 5.10494 5.23946 5.27731 5.37967 5.42723 5.49543 5.59713 5.66124 5.71015 5.72893 5.98595 6.03557 6.14872 6.19369 6.35517 6.47876 6.66765 6.81719 6.88616 7.02832 7.45636 7.64324 7.79110 8.04146 8.27805 8.88305 9.51968 10.97893 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.005084 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.381026 B = 5505.889028 C = 5947.117092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.057 0.943 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.984 5.984 13 C 0.113 3.887 14 S 2.775 3.225 15 O -0.991 6.991 16 O -0.966 6.966 17 N -1.007 6.007 18 C 0.117 3.883 19 C -0.135 4.135 20 C -0.124 4.124 21 H 0.097 0.903 22 C -0.151 4.151 23 C 0.277 3.723 24 F -0.185 7.185 25 F -0.200 7.200 26 C 0.091 3.909 27 H 0.033 0.967 28 H 0.091 0.909 29 H 0.013 0.987 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 2.423 15.386 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.167 3.833 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.827 5.827 13 C -0.033 4.033 14 S 2.785 3.215 15 O -0.975 6.975 16 O -0.950 6.950 17 N -0.843 5.843 18 C -0.008 4.008 19 C -0.173 4.173 20 C -0.143 4.143 21 H 0.116 0.884 22 C -0.209 4.209 23 C 0.239 3.761 24 F -0.166 7.166 25 F -0.181 7.181 26 C -0.037 4.037 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.054 2.577 15.239 15.979 hybrid contribution -0.325 -0.683 -0.802 1.102 sum -4.379 1.894 14.438 15.205 Atomic orbital electron populations 1.22136 0.98116 0.99843 1.00484 1.18729 0.91388 0.92797 0.80418 0.92541 1.21334 1.31523 1.12962 0.90024 0.91984 1.24892 0.94974 0.94999 0.98959 1.69848 1.36613 1.22731 1.23747 0.86500 0.79294 0.79298 0.82339 1.20673 1.21151 1.19862 1.57700 1.69795 1.19844 1.35357 1.21125 1.01728 0.81841 0.98631 1.02214 0.73836 0.73121 0.72285 1.93537 1.69073 1.60213 1.74686 1.93605 1.73696 1.55918 1.71742 1.58586 1.67273 1.24572 1.33880 1.21598 0.93343 0.82073 1.03777 1.22179 0.96211 1.02437 0.96517 1.22052 0.98337 0.92954 1.01000 0.88436 1.21819 0.93296 1.02942 1.02807 1.21474 0.93933 0.88971 0.71712 1.93051 1.88093 1.78896 1.56563 1.92983 1.92622 1.86504 1.45990 1.22148 0.91229 1.00054 0.90263 0.94797 0.89014 0.96796 0.92734 0.93317 0.93607 0.90844 0.90948 0.87903 0.89236 0.89418 0.92000 0.91405 0.91560 0.87302 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.95 37.16 0.33 -2.91 16 2 C 0.27 6.43 2.62 -69.09 -0.18 6.25 16 3 H 0.06 1.48 6.91 -51.93 -0.36 1.12 16 4 C -0.52 -13.83 8.37 -34.44 -0.29 -14.12 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 N -0.98 -20.30 3.12 -115.85 -0.36 -20.66 16 13 C 0.11 2.07 9.53 59.85 0.57 2.64 16 14 S 2.78 53.77 6.06 -107.50 -0.65 53.12 16 15 O -0.99 -20.23 15.93 -57.17 -0.91 -21.14 16 16 O -0.97 -21.73 15.41 -57.17 -0.88 -22.61 16 17 N -1.01 -14.77 3.32 -113.27 -0.38 -15.15 16 18 C 0.12 1.47 6.41 -3.49 -0.02 1.45 16 19 C -0.13 -1.49 5.26 -26.39 -0.14 -1.63 16 20 C -0.12 -1.25 2.34 -90.58 -0.21 -1.47 16 21 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 22 C -0.15 -1.41 8.95 37.16 0.33 -1.08 16 23 C 0.28 3.39 1.67 -26.61 -0.04 3.35 16 24 F -0.19 -2.73 15.99 2.25 0.04 -2.69 16 25 F -0.20 -2.45 16.50 2.25 0.04 -2.42 16 26 C 0.09 1.13 5.86 -3.71 -0.02 1.11 16 27 H 0.03 0.73 6.66 -51.93 -0.35 0.38 16 28 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 29 H 0.01 0.26 6.27 -51.93 -0.33 -0.07 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 33 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.48 7.12 -51.93 -0.37 1.11 16 36 H 0.09 1.20 5.86 -51.93 -0.30 0.90 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.56 7.77 -51.93 -0.40 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 41 H 0.11 1.41 7.13 -51.93 -0.37 1.04 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -31.04 344.40 -8.09 -39.13 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.01 Total: -0.29 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 0.23 Total: -4.78 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.11 Total: -59.53 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.79 Total: -43.75 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.07 Total: -5.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.65 Total: 53.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.04 -8.09 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337847737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.930 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.28 seconds