Wall clock time and date at job start Tue Mar 31 2020 16:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 N 1.65609 * 107.21523 * 89.99672 * 14 12 2 18 18 C 1.46918 * 120.63386 * 269.72691 * 17 14 12 19 19 C 1.53622 * 108.54502 * 126.37066 * 18 17 14 20 20 C 1.53033 * 109.24305 * 54.85535 * 19 18 17 21 21 H 1.08996 * 109.46402 * 58.53360 * 20 19 18 22 22 C 1.52999 * 109.45137 * 178.50051 * 20 19 18 23 23 C 1.53041 * 109.53849 * 298.51172 * 20 19 18 24 24 F 1.39899 * 109.49815 * 301.41544 * 23 20 19 25 25 F 1.39896 * 109.49929 * 181.31814 * 23 20 19 26 26 C 1.46927 * 120.62676 * 90.00565 * 17 14 12 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 32 32 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 33 33 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 34 34 H 1.09006 * 109.58322 * 246.20242 * 18 17 14 35 35 H 1.09005 * 109.58665 * 6.61987 * 18 17 14 36 36 H 1.09002 * 109.63061 * 294.85712 * 19 18 17 37 37 H 1.09005 * 109.45539 * 174.74006 * 19 18 17 38 38 H 1.09000 * 109.47659 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.46695 * 300.06042 * 22 20 19 40 40 H 1.09000 * 109.47426 * 60.05348 * 22 20 19 41 41 H 1.09004 * 109.58706 * 353.37113 * 26 17 14 42 42 H 1.09002 * 109.58620 * 113.65299 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.4421 2.1684 3.1946 19 6 -0.0896 2.1290 3.3058 20 6 -0.4821 1.5026 4.6457 21 1 -0.0502 2.0852 5.4594 22 6 -2.0064 1.4950 4.7775 23 6 0.0424 0.0664 4.7125 24 9 -0.4867 -0.6739 3.6500 25 9 -0.3426 -0.5154 5.9251 26 6 1.5711 0.0804 4.6147 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1612 -3.4844 31 1 2.4157 -2.7377 0.9718 32 1 1.6238 -2.2851 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 1.8494 2.8337 3.9561 35 1 1.7291 2.5235 2.2048 36 1 -0.5007 1.5328 2.4910 37 1 -0.4840 3.1436 3.2490 38 1 -2.2865 1.0494 5.7320 39 1 -2.3802 2.5178 4.7300 40 1 -2.4386 0.9121 3.9642 41 1 1.9433 -0.9428 4.5621 42 1 1.9909 0.5774 5.4893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337847737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:37 Heat of formation + Delta-G solvation = -196.647531 kcal Electronic energy + Delta-G solvation = -29100.504814 eV Core-core repulsion = 24877.243144 eV Total energy + Delta-G solvation = -4223.261670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.95068 -47.92715 -39.15806 -38.47007 -37.89249 -36.96571 -34.84761 -34.52826 -31.56099 -30.87691 -28.79414 -27.29933 -27.02481 -24.52397 -24.02335 -22.55965 -21.45703 -20.03874 -19.09852 -18.66849 -18.17368 -17.95744 -17.86799 -17.54972 -16.98989 -16.55994 -15.89952 -15.25526 -15.20669 -14.96692 -14.78621 -14.60307 -14.50420 -14.34125 -14.22058 -13.94898 -13.78842 -13.54735 -13.44107 -13.33666 -13.18290 -13.09508 -13.02132 -12.91660 -12.81369 -12.60330 -12.53394 -12.30740 -12.19707 -12.05359 -11.86788 -11.69496 -11.43283 -11.10563 -10.49884 -10.19631 -9.66107 -8.11349 -6.24296 -0.47215 1.41832 1.43724 1.53080 1.84336 2.40077 2.48521 2.70799 3.02936 3.16744 3.23241 3.37164 3.45202 3.72795 3.93561 4.11588 4.12995 4.23333 4.40480 4.49892 4.57578 4.64309 4.66589 4.73501 4.80116 4.86672 4.92941 4.97910 5.02521 5.09750 5.12405 5.15993 5.28785 5.37459 5.44837 5.62129 5.77591 5.88509 6.14074 6.31426 6.82388 7.44277 8.92524 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.005084 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.381026 B = 5505.889028 C = 5947.117092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.277 3.723 3 H 0.029 0.971 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.994 5.994 13 C 0.110 3.890 14 S 2.789 3.211 15 O -1.004 7.004 16 O -1.003 7.003 17 N -0.999 5.999 18 C 0.109 3.891 19 C -0.130 4.130 20 C -0.119 4.119 21 H 0.129 0.871 22 C -0.149 4.149 23 C 0.271 3.729 24 F -0.204 7.204 25 F -0.199 7.199 26 C 0.084 3.916 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.101 0.899 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 2.927 17.147 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.173 3.827 3 H 0.047 0.953 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.836 5.836 13 C -0.035 4.035 14 S 2.799 3.201 15 O -0.988 6.988 16 O -0.987 6.987 17 N -0.839 5.839 18 C -0.015 4.015 19 C -0.168 4.168 20 C -0.138 4.138 21 H 0.147 0.853 22 C -0.206 4.206 23 C 0.234 3.766 24 F -0.185 7.185 25 F -0.180 7.180 26 C -0.043 4.043 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.689 3.060 17.003 17.901 hybrid contribution -0.129 -0.824 -1.242 1.496 sum -4.817 2.236 15.761 16.632 Atomic orbital electron populations 1.21900 0.96871 0.99768 1.00410 1.18377 0.92136 0.91283 0.80873 0.95347 1.21646 1.31679 1.12993 0.91621 0.92885 1.25583 0.95223 0.95706 1.01458 1.69954 1.37176 1.23547 1.24323 0.85635 0.78702 0.78479 0.79275 1.19697 1.20744 1.20122 1.57627 1.69833 1.20840 1.35270 1.21232 1.01468 0.80666 1.00173 1.01556 0.73887 0.72383 0.72227 1.93510 1.69867 1.60762 1.74684 1.93553 1.75044 1.57010 1.73063 1.58140 1.66877 1.25318 1.33521 1.21869 0.94612 0.81178 1.03809 1.22142 0.94806 1.03654 0.96236 1.22111 0.98926 0.91485 1.01235 0.85327 1.21809 0.92652 1.03935 1.02238 1.21725 0.93717 0.90019 0.71182 1.93017 1.88360 1.79556 1.57582 1.92985 1.92562 1.86656 1.45786 1.22442 0.91723 0.99966 0.90158 0.94734 0.91470 0.94412 0.92612 0.93920 0.91194 0.90794 0.87183 0.90346 0.92089 0.86612 0.91606 0.89401 0.93428 0.88072 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.95 71.98 0.64 -5.20 16 2 C 0.28 13.55 2.62 44.24 0.12 13.67 16 3 H 0.03 1.55 6.91 -2.39 -0.02 1.54 16 4 C -0.54 -29.40 8.37 25.60 0.21 -29.19 16 5 H 0.05 2.90 7.65 -2.91 -0.02 2.88 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -50.62 11.32 21.45 0.24 -50.38 16 8 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.99 -41.50 3.12 -520.44 -1.62 -43.12 16 13 C 0.11 4.05 9.53 127.77 1.22 5.26 16 14 S 2.79 108.08 6.06 -56.49 -0.34 107.74 16 15 O -1.00 -40.57 15.93 -128.00 -2.04 -42.60 16 16 O -1.00 -46.09 15.41 -128.00 -1.97 -48.07 16 17 N -1.00 -27.78 3.32 -512.29 -1.70 -29.48 16 18 C 0.11 2.53 6.41 86.51 0.55 3.09 16 19 C -0.13 -2.55 5.26 30.81 0.16 -2.39 16 20 C -0.12 -1.99 2.34 -10.77 -0.03 -2.02 16 21 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 22 C -0.15 -2.35 8.95 71.98 0.64 -1.71 16 23 C 0.27 5.98 1.67 30.67 0.05 6.03 16 24 F -0.20 -5.77 15.99 44.97 0.72 -5.05 16 25 F -0.20 -4.35 16.50 44.97 0.74 -3.61 16 26 C 0.08 1.87 5.86 86.36 0.51 2.38 16 27 H 0.03 1.50 6.66 -2.39 -0.02 1.48 16 28 H 0.07 3.36 6.07 -2.39 -0.01 3.35 16 29 H 0.04 1.47 6.27 -2.38 -0.01 1.45 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 2.18 7.79 -2.39 -0.02 2.16 16 33 H 0.07 2.67 6.43 -2.39 -0.02 2.65 16 34 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.08 2.24 7.12 -2.38 -0.02 2.23 16 36 H 0.06 1.57 5.86 -2.39 -0.01 1.56 16 37 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.06 0.99 7.77 -2.39 -0.02 0.98 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 0.93 7.84 -2.39 -0.02 0.91 16 41 H 0.10 2.43 7.13 -2.38 -0.02 2.41 16 42 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -68.02 344.40 1.62 -66.40 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.03 Total: 11.19 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.53 Total: -8.52 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -3.08 Total: -122.98 kcal Atomic # 8 Polarization: -86.66 SS G_CDS: -4.01 Total: -90.67 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 1.46 Total: -8.66 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 108.08 SS G_CDS: -0.34 Total: 107.74 kcal Total: -68.02 1.62 -66.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337847737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.246 kcal (2) G-P(sol) polarization free energy of solvation -68.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds