Wall clock time and date at job start Tue Mar 31 2020 17:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99431 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00258 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47450 * 89.99733 * 9 7 5 11 11 H 1.48506 * 109.46858 * 210.00048 * 9 7 5 12 12 H 1.48500 * 109.47256 * 329.99730 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.53001 * 109.47089 * 164.71987 * 17 16 13 19 19 H 1.09001 * 110.01315 * 53.60588 * 18 17 16 20 20 C 1.54265 * 110.03533 * 292.16591 * 18 17 16 21 21 C 1.54884 * 104.19466 * 217.10549 * 20 18 17 22 22 C 1.54891 * 102.74940 * 37.94103 * 21 20 18 23 23 C 1.53874 * 110.03010 * 174.99515 * 18 17 16 24 24 F 1.39900 * 110.03284 * 238.56783 * 23 18 17 25 25 F 1.39892 * 110.03638 * 0.02562 * 23 18 17 26 26 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 27 27 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 28 28 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 31 31 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 32 32 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 33 33 H 0.97006 * 119.99357 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 35 35 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 36 36 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 37 37 H 1.08999 * 110.48181 * 335.78506 * 20 18 17 38 38 H 1.09004 * 110.48510 * 98.42133 * 20 18 17 39 39 H 1.08999 * 110.75396 * 279.62124 * 21 20 18 40 40 H 1.09001 * 110.75725 * 156.25652 * 21 20 18 41 41 H 1.09004 * 110.48398 * 203.37578 * 22 21 20 42 42 H 1.09000 * 110.48393 * 80.73805 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 5.0192 2.0815 -3.6243 9 14 2.6819 3.5339 -3.9461 10 1 2.9466 4.9220 -3.4899 11 1 2.8866 3.4478 -5.4145 12 1 1.2813 3.1641 -3.6191 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.4075 2.2641 1.4856 19 1 6.5950 1.2407 1.8107 20 6 6.4720 3.2232 2.6921 21 6 7.9214 3.7687 2.6665 22 6 8.1980 3.9331 1.1514 23 6 7.5048 2.7155 0.5059 24 9 8.4299 1.6836 0.3139 25 9 6.9340 3.0823 -0.7174 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1802 -1.0757 33 1 5.2713 2.4847 -4.4698 34 1 4.2771 1.2773 2.4782 35 1 5.0449 1.7849 -0.1128 36 1 4.8084 3.4005 0.5956 37 1 5.7561 4.0362 2.5718 38 1 6.2842 2.6824 3.6197 39 1 8.6120 3.0513 3.1097 40 1 7.9814 4.7301 3.1766 41 1 9.2699 3.9106 0.9546 42 1 7.7609 4.8609 0.7823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451821890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:51 Heat of formation + Delta-G solvation = -186.266796 kcal Electronic energy + Delta-G solvation = -28343.131170 eV Core-core repulsion = 24120.319642 eV Total energy + Delta-G solvation = -4222.811527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 5.93 seconds Orbital eigenvalues (eV) -48.47822 -46.50918 -37.84999 -36.71438 -36.17035 -35.28602 -34.41039 -32.61227 -30.22171 -29.48784 -27.72675 -27.12695 -24.05750 -22.90100 -21.58210 -21.20108 -20.13047 -18.87215 -17.42721 -17.35855 -16.92179 -16.82114 -16.17272 -15.78803 -15.52477 -14.90530 -14.56862 -14.21826 -14.16041 -13.91167 -13.56304 -13.41994 -13.18647 -12.78408 -12.73136 -12.52670 -12.37659 -12.05012 -11.95779 -11.87862 -11.63993 -11.53705 -11.41907 -11.36322 -11.25755 -11.13038 -11.01697 -10.93694 -10.70598 -10.47403 -10.42808 -10.30978 -10.12516 -9.61218 -8.83547 -8.60114 -8.11433 -6.11114 -4.12591 1.23475 3.28311 3.34770 3.38604 3.43713 3.96985 4.03700 4.19420 4.35309 4.38153 4.48436 4.93101 5.07869 5.13428 5.19280 5.21354 5.34636 5.38406 5.39744 5.51799 5.66647 5.68759 5.72879 5.81120 5.88907 5.92783 6.00965 6.12828 6.18095 6.24823 6.38549 6.53811 6.59971 6.67344 6.88401 7.13591 7.27135 7.50032 7.58368 8.42666 8.88161 9.48257 10.99457 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.006674 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.648401 B = 4194.302286 C = 5903.718076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.548 4.548 6 H 0.086 0.914 7 C 0.082 3.918 8 N -0.881 5.881 9 Si 0.865 3.135 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.790 3.210 14 O -0.999 6.999 15 O -0.982 6.982 16 N -1.127 6.127 17 C 0.119 3.881 18 C -0.137 4.137 19 H 0.101 0.899 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.163 4.163 23 C 0.286 3.714 24 F -0.202 7.202 25 F -0.172 7.172 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 -0.025 11.231 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.587 4.587 6 H 0.103 0.897 7 C -0.122 4.122 8 N -0.518 5.518 9 Si 0.692 3.308 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.190 1.190 13 S 2.798 3.202 14 O -0.983 6.983 15 O -0.966 6.966 16 N -0.886 5.886 17 C -0.007 4.007 18 C -0.158 4.158 19 H 0.119 0.881 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.202 4.202 23 C 0.249 3.751 24 F -0.183 7.183 25 F -0.152 7.152 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.696 0.634 11.384 11.716 hybrid contribution 0.026 0.014 -0.777 0.777 sum 2.722 0.649 10.607 10.970 Atomic orbital electron populations 1.22216 0.96972 1.01539 1.02238 1.20999 0.93492 0.82553 1.02589 1.57503 1.78812 1.23058 1.23372 1.19596 0.98331 0.92072 0.81066 1.21425 1.00898 1.29745 1.06628 0.89656 1.24803 0.94801 0.95824 0.96799 1.69898 1.20113 1.43152 1.18616 0.87020 0.82226 0.82404 0.79129 1.19800 1.21168 1.18959 1.01570 0.72549 0.73608 0.72523 1.93554 1.70569 1.76267 1.57910 1.93560 1.86030 1.31238 1.85769 1.55881 1.25599 1.68459 1.38684 1.21697 0.84129 1.01467 0.93377 1.22978 0.95178 1.02053 0.95592 0.88112 1.22491 0.97060 0.98999 0.97209 1.22475 0.96949 1.01964 0.94611 1.23389 1.02226 0.97671 0.96869 1.21621 0.85537 0.85456 0.82470 1.92993 1.67860 1.61507 1.95913 1.93194 1.84733 1.91468 1.45830 0.92622 0.92280 0.92171 0.89895 0.91606 0.94624 0.94047 0.92551 0.76227 0.86851 0.89849 0.89999 0.90481 0.90762 0.90226 0.89226 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.13 2.17 6.06 -4.05 -0.02 2.15 16 3 N -0.99 -19.29 2.82 -115.67 -0.33 -19.62 16 4 C 0.21 4.82 4.50 -5.19 -0.02 4.80 16 5 C -0.55 -13.92 8.62 -34.44 -0.30 -14.22 16 6 H 0.09 2.27 6.07 -52.49 -0.32 1.96 16 7 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 8 N -0.88 -25.10 13.96 55.43 0.77 -24.32 16 9 Si 0.87 20.57 27.47 -169.99 -4.67 15.91 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 13 S 2.79 52.66 6.10 -107.50 -0.66 52.00 16 14 O -1.00 -19.34 17.11 -57.17 -0.98 -20.32 16 15 O -0.98 -21.50 16.15 -57.17 -0.92 -22.42 16 16 N -1.13 -17.87 5.87 -10.61 -0.06 -17.94 16 17 C 0.12 2.08 4.31 -4.04 -0.02 2.06 16 18 C -0.14 -1.94 2.82 -89.50 -0.25 -2.19 16 19 H 0.10 1.30 8.02 -51.93 -0.42 0.88 16 20 C -0.12 -1.34 6.19 -25.08 -0.16 -1.49 16 21 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 22 C -0.16 -1.93 6.40 -25.07 -0.16 -2.09 16 23 C 0.29 4.51 2.53 -25.61 -0.06 4.45 16 24 F -0.20 -3.39 17.04 2.25 0.04 -3.35 16 25 F -0.17 -3.51 15.45 2.25 0.03 -3.47 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 30 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 31 H 0.04 0.80 7.17 -51.93 -0.37 0.43 16 32 H 0.04 0.99 6.34 -51.93 -0.33 0.66 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.41 5.15 8.65 -34.47 -0.30 4.85 16 35 H 0.11 2.38 4.47 -51.93 -0.23 2.15 16 36 H 0.08 1.59 7.56 -51.93 -0.39 1.20 16 37 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 42 H 0.10 1.15 8.12 -51.93 -0.42 0.73 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -31.51 351.93 -8.47 -39.98 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.12 Total: 6.18 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.88 Total: -7.94 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.38 Total: -61.87 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.90 Total: -42.74 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.07 Total: -6.82 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 52.66 SS G_CDS: -0.66 Total: 52.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.51 -8.47 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451821890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.283 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.93 seconds