Wall clock time and date at job start Tue Mar 31 2020 17:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99431 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00258 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47450 * 89.99733 * 9 7 5 11 11 H 1.48506 * 109.46858 * 210.00048 * 9 7 5 12 12 H 1.48500 * 109.47256 * 329.99730 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.53001 * 109.47089 * 164.71987 * 17 16 13 19 19 H 1.09001 * 110.01315 * 53.60588 * 18 17 16 20 20 C 1.54265 * 110.03533 * 292.16591 * 18 17 16 21 21 C 1.54884 * 104.19466 * 217.10549 * 20 18 17 22 22 C 1.54891 * 102.74940 * 37.94103 * 21 20 18 23 23 C 1.53874 * 110.03010 * 174.99515 * 18 17 16 24 24 F 1.39900 * 110.03284 * 238.56783 * 23 18 17 25 25 F 1.39892 * 110.03638 * 0.02562 * 23 18 17 26 26 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 27 27 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 28 28 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 31 31 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 32 32 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 33 33 H 0.97006 * 119.99357 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 35 35 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 36 36 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 37 37 H 1.08999 * 110.48181 * 335.78506 * 20 18 17 38 38 H 1.09004 * 110.48510 * 98.42133 * 20 18 17 39 39 H 1.08999 * 110.75396 * 279.62124 * 21 20 18 40 40 H 1.09001 * 110.75725 * 156.25652 * 21 20 18 41 41 H 1.09004 * 110.48398 * 203.37578 * 22 21 20 42 42 H 1.09000 * 110.48393 * 80.73805 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 5.0192 2.0815 -3.6243 9 14 2.6819 3.5339 -3.9461 10 1 2.9466 4.9220 -3.4899 11 1 2.8866 3.4478 -5.4145 12 1 1.2813 3.1641 -3.6191 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.4075 2.2641 1.4856 19 1 6.5950 1.2407 1.8107 20 6 6.4720 3.2232 2.6921 21 6 7.9214 3.7687 2.6665 22 6 8.1980 3.9331 1.1514 23 6 7.5048 2.7155 0.5059 24 9 8.4299 1.6836 0.3139 25 9 6.9340 3.0823 -0.7174 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1802 -1.0757 33 1 5.2713 2.4847 -4.4698 34 1 4.2771 1.2773 2.4782 35 1 5.0449 1.7849 -0.1128 36 1 4.8084 3.4005 0.5956 37 1 5.7561 4.0362 2.5718 38 1 6.2842 2.6824 3.6197 39 1 8.6120 3.0513 3.1097 40 1 7.9814 4.7301 3.1766 41 1 9.2699 3.9106 0.9546 42 1 7.7609 4.8609 0.7823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451821890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:50 Heat of formation + Delta-G solvation = -208.702060 kcal Electronic energy + Delta-G solvation = -28344.104036 eV Core-core repulsion = 24120.319642 eV Total energy + Delta-G solvation = -4223.784393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.82188 -47.90179 -38.96941 -38.29179 -37.74918 -36.90494 -35.68517 -34.58166 -31.78235 -30.63426 -28.89426 -28.72847 -25.35980 -24.55535 -23.17695 -22.13218 -21.35762 -20.37627 -19.11380 -18.79077 -18.58255 -18.35291 -17.43299 -17.26689 -16.84552 -16.39325 -16.06435 -15.84847 -15.43636 -15.09362 -14.90584 -14.77769 -14.54610 -14.43011 -14.18354 -14.13294 -13.71932 -13.61715 -13.50766 -13.30646 -13.17829 -13.06826 -12.82715 -12.75504 -12.59654 -12.48079 -12.19895 -12.16848 -12.11910 -12.03874 -11.71321 -11.60587 -11.51100 -11.46824 -10.68662 -10.32344 -9.77014 -8.18891 -6.22249 -0.30019 1.37623 1.41901 1.47457 1.92937 2.38866 2.55616 2.88764 3.02830 3.14866 3.28022 3.32074 3.49884 3.93255 3.98338 4.08457 4.25962 4.29573 4.31671 4.41571 4.45039 4.52374 4.56779 4.70404 4.79767 4.89399 4.99259 4.99544 5.05167 5.05871 5.07863 5.09858 5.20863 5.34910 5.39871 5.46595 5.54064 5.80809 6.19307 6.38384 6.81383 7.40591 8.93822 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.006674 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.648401 B = 4194.302286 C = 5903.718076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.992 5.992 4 C 0.220 3.780 5 C -0.534 4.534 6 H 0.065 0.935 7 C 0.032 3.968 8 N -0.923 5.923 9 Si 0.912 3.088 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.245 1.245 13 S 2.802 3.198 14 O -0.999 6.999 15 O -1.013 7.013 16 N -1.110 6.110 17 C 0.128 3.872 18 C -0.133 4.133 19 H 0.115 0.885 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.159 4.159 23 C 0.265 3.735 24 F -0.211 7.211 25 F -0.208 7.208 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.423 0.577 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 -0.149 13.296 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.832 5.832 4 C 0.095 3.905 5 C -0.573 4.573 6 H 0.083 0.917 7 C -0.169 4.169 8 N -0.562 5.562 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.169 1.169 13 S 2.809 3.191 14 O -0.983 6.983 15 O -0.996 6.996 16 N -0.872 5.872 17 C 0.001 3.999 18 C -0.154 4.154 19 H 0.133 0.867 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.197 4.197 23 C 0.228 3.772 24 F -0.192 7.192 25 F -0.189 7.189 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.259 0.741 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.237 0.482 13.484 13.677 hybrid contribution 0.193 -0.041 -1.365 1.379 sum 2.430 0.440 12.119 12.368 Atomic orbital electron populations 1.22196 0.95356 1.03379 1.01698 1.21270 0.94912 0.81027 1.03329 1.57487 1.79339 1.24180 1.22241 1.19332 0.96840 0.91884 0.82415 1.21616 1.01572 1.28145 1.05974 0.91694 1.25482 0.96036 0.97513 0.97858 1.70026 1.21985 1.44976 1.19193 0.86245 0.81529 0.80320 0.78162 1.20158 1.20961 1.16893 1.01106 0.72914 0.72849 0.72186 1.93548 1.71001 1.76064 1.57705 1.93522 1.86670 1.33290 1.86142 1.55503 1.24288 1.68483 1.38969 1.21360 0.86460 0.99328 0.92717 1.22993 0.92259 1.03974 0.96138 0.86663 1.22536 0.98201 0.98222 0.96555 1.22504 0.95813 1.03702 0.92724 1.23437 1.02528 0.95437 0.98335 1.22380 0.86381 0.86986 0.81413 1.92963 1.68144 1.62182 1.95934 1.93118 1.85504 1.91856 1.48374 0.93157 0.92777 0.89198 0.90335 0.89751 0.93799 0.95047 0.92822 0.74123 0.90643 0.92020 0.90958 0.87713 0.89026 0.87724 0.87882 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.12 3.83 6.06 86.38 0.52 4.36 16 3 N -0.99 -38.24 2.82 -519.86 -1.47 -39.70 16 4 C 0.22 9.96 4.50 85.63 0.39 10.35 16 5 C -0.53 -27.74 8.62 25.60 0.22 -27.52 16 6 H 0.07 3.61 6.07 -2.91 -0.02 3.59 16 7 C 0.03 1.73 5.47 84.65 0.46 2.19 16 8 N -0.92 -54.46 13.96 21.45 0.30 -54.16 16 9 Si 0.91 42.59 27.47 68.60 1.88 44.48 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 13 S 2.80 103.61 6.10 -56.49 -0.34 103.26 16 14 O -1.00 -36.83 17.11 -128.00 -2.19 -39.02 16 15 O -1.01 -44.21 16.15 -128.00 -2.07 -46.28 16 16 N -1.11 -34.36 5.87 -187.50 -1.10 -35.46 16 17 C 0.13 4.55 4.31 86.38 0.37 4.93 16 18 C -0.13 -3.66 2.82 -10.07 -0.03 -3.69 16 19 H 0.12 2.80 8.02 -2.39 -0.02 2.78 16 20 C -0.12 -2.33 6.19 31.67 0.20 -2.14 16 21 C -0.11 -1.75 6.91 31.88 0.22 -1.53 16 22 C -0.16 -3.56 6.40 31.67 0.20 -3.36 16 23 C 0.27 8.42 2.53 31.32 0.08 8.50 16 24 F -0.21 -7.14 17.04 44.97 0.77 -6.37 16 25 F -0.21 -8.96 15.45 44.97 0.69 -8.26 16 26 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 30 H 0.08 2.36 7.61 -2.39 -0.02 2.35 16 31 H 0.04 1.92 7.17 -2.39 -0.02 1.90 16 32 H 0.03 1.50 6.34 -2.39 -0.02 1.49 16 33 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 34 H 0.42 9.93 8.65 -96.74 -0.84 9.10 16 35 H 0.08 3.32 4.47 -2.39 -0.01 3.31 16 36 H 0.06 2.46 7.56 -2.39 -0.02 2.44 16 37 H 0.07 1.60 7.76 -2.39 -0.02 1.58 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 2.01 8.11 -2.38 -0.02 1.99 16 42 H 0.10 2.20 8.12 -2.39 -0.02 2.18 16 Total: -1.00 -69.80 351.93 -0.01 -69.80 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.15 Total: 23.54 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 3.37 Total: -11.83 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -2.27 Total: -129.33 kcal Atomic # 8 Polarization: -81.04 SS G_CDS: -4.26 Total: -85.30 kcal Atomic # 9 Polarization: -16.10 SS G_CDS: 1.46 Total: -14.63 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.48 kcal Atomic # 16 Polarization: 103.61 SS G_CDS: -0.34 Total: 103.26 kcal Total: -69.80 -0.01 -69.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451821890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.898 kcal (2) G-P(sol) polarization free energy of solvation -69.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds