Wall clock time and date at job start Tue Mar 31 2020 17:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47329 * 2 1 4 4 C 1.46499 * 120.00210 * 84.99618 * 3 2 1 5 5 C 1.50707 * 109.46633 * 85.00184 * 4 3 2 6 6 H 1.07995 * 120.00012 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99871 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99975 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00006 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.46834 * 90.00155 * 9 7 5 11 11 H 1.48501 * 109.47288 * 209.99566 * 9 7 5 12 12 H 1.48497 * 109.47399 * 330.00218 * 9 7 5 13 13 S 1.65599 * 120.00148 * 265.00523 * 3 2 1 14 14 O 1.42104 * 106.40420 * 23.53412 * 13 3 2 15 15 O 1.42093 * 106.40508 * 156.45559 * 13 3 2 16 16 N 1.65603 * 107.21597 * 269.99889 * 13 3 2 17 17 C 1.46931 * 120.63236 * 97.04764 * 16 13 3 18 18 C 1.53190 * 108.77278 * 126.36918 * 17 16 13 19 19 C 1.53035 * 109.31292 * 54.63777 * 18 17 16 20 20 F 1.39896 * 109.46343 * 58.65320 * 19 18 17 21 21 F 1.39904 * 109.46122 * 178.61367 * 19 18 17 22 22 C 1.53041 * 109.53841 * 298.63157 * 19 18 17 23 23 C 1.46927 * 120.62821 * 276.76711 * 16 13 3 24 24 H 1.09004 * 109.58591 * 113.84510 * 23 16 13 25 25 C 1.52996 * 109.58857 * 353.41948 * 23 16 13 26 26 H 1.08997 * 109.47220 * 59.99969 * 1 2 3 27 27 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46607 * 299.99867 * 1 2 3 29 29 H 1.09001 * 109.46607 * 240.00133 * 2 1 3 30 30 H 1.08997 * 109.47220 * 120.00031 * 2 1 3 31 31 H 1.08996 * 109.47701 * 204.99876 * 4 3 2 32 32 H 1.09006 * 109.47198 * 325.00688 * 4 3 2 33 33 H 0.97003 * 120.00098 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.58357 * 246.15799 * 17 16 13 35 35 H 1.09001 * 109.58359 * 6.58056 * 17 16 13 36 36 H 1.09002 * 109.49130 * 174.58651 * 18 17 16 37 37 H 1.08998 * 109.49908 * 294.68229 * 18 17 16 38 38 H 1.08999 * 109.49714 * 181.32167 * 22 19 18 39 39 H 1.09011 * 109.49724 * 301.38393 * 22 19 18 40 40 H 1.09003 * 109.46723 * 52.07399 * 25 23 16 41 41 H 1.08993 * 109.47242 * 172.07356 * 25 23 16 42 42 H 1.09001 * 109.47161 * 292.08158 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4949 1.7888 1.8823 6 1 4.1724 1.1116 1.3835 7 6 3.8526 2.3605 3.0848 8 7 5.0188 2.0809 3.6247 9 14 2.6804 3.5312 3.9478 10 1 1.7959 2.7626 4.8602 11 1 3.4593 4.5226 4.7325 12 1 1.8540 4.2388 2.9371 13 16 2.4122 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4448 15 8 2.3057 3.5185 -1.1998 16 7 4.0144 1.8137 -1.7138 17 6 4.4201 0.7138 -2.5995 18 6 5.3593 1.2680 -3.6754 19 6 6.5252 1.9963 -3.0031 20 9 7.2066 1.1093 -2.1628 21 9 7.4016 2.4766 -3.9822 22 6 5.9892 3.1693 -2.1791 23 6 5.0571 2.6402 -1.0907 24 1 5.6288 2.0369 -0.3854 25 6 4.4093 3.8160 -0.3568 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0923 3.1803 1.0756 32 1 1.3618 1.8097 1.9453 33 1 5.2707 2.4835 4.4706 34 1 4.9388 -0.0498 -2.0198 35 1 3.5383 0.2808 -3.0719 36 1 5.7436 0.4471 -4.2807 37 1 4.8131 1.9648 -4.3112 38 1 6.8220 3.7016 -1.7195 39 1 5.4375 3.8486 -2.8291 40 1 3.6362 3.4433 0.3152 41 1 5.1670 4.3464 0.2198 42 1 3.9628 4.4958 -1.0825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528556341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:05 Heat of formation + Delta-G solvation = -179.816459 kcal Electronic energy + Delta-G solvation = -29094.021097 eV Core-core repulsion = 24871.489277 eV Total energy + Delta-G solvation = -4222.531820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.97988 -47.97563 -39.45839 -38.50532 -37.79754 -36.87145 -34.63984 -33.64435 -32.62791 -31.80531 -29.00588 -28.20494 -25.22073 -24.55497 -23.48540 -23.11711 -21.81885 -19.77226 -19.00862 -18.77204 -18.29410 -18.20901 -17.60637 -17.27290 -17.10702 -16.63843 -16.08283 -15.76888 -15.47910 -14.84866 -14.74152 -14.59812 -14.53803 -14.34636 -14.21901 -14.10612 -13.83091 -13.73919 -13.62407 -13.43567 -13.30883 -13.09520 -13.08381 -12.74874 -12.65334 -12.59944 -12.46640 -12.30530 -12.01869 -11.75852 -11.69739 -11.55485 -11.42332 -11.21924 -10.70772 -10.15223 -9.73871 -8.21843 -6.23703 -0.32979 1.37368 1.43161 1.50104 1.87405 2.38278 2.51388 2.75666 3.05593 3.12983 3.28483 3.36228 3.39612 3.75446 3.82591 3.96638 4.17167 4.35751 4.41417 4.45804 4.47096 4.51573 4.58689 4.65382 4.70728 4.75629 4.83283 4.89911 4.98717 4.99882 5.03233 5.14922 5.31443 5.39525 5.46412 5.51018 5.54677 5.70947 5.90352 6.37548 6.81138 7.38865 8.92720 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.006458 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.893007 B = 4334.651866 C = 5507.909323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.993 5.993 4 C 0.217 3.783 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.910 3.090 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.249 1.249 13 S 2.793 3.207 14 O -0.998 6.998 15 O -0.996 6.996 16 N -1.002 6.002 17 C 0.113 3.887 18 C -0.163 4.163 19 C 0.287 3.713 20 F -0.209 7.209 21 F -0.206 7.206 22 C -0.165 4.165 23 C 0.173 3.827 24 H 0.066 0.934 25 C -0.186 4.186 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 -2.152 -12.840 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.832 5.832 4 C 0.092 3.908 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.735 3.265 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.173 1.173 13 S 2.804 3.196 14 O -0.982 6.982 15 O -0.980 6.980 16 N -0.841 5.841 17 C -0.013 4.013 18 C -0.202 4.202 19 C 0.251 3.749 20 F -0.190 7.190 21 F -0.187 7.187 22 C -0.205 4.205 23 C 0.067 3.933 24 H 0.084 0.916 25 C -0.244 4.244 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.790 -1.641 -13.235 13.625 hybrid contribution 0.507 0.290 1.300 1.425 sum -2.282 -1.351 -11.935 12.226 Atomic orbital electron populations 1.22197 0.95307 1.03383 1.01733 1.21264 0.94917 0.81211 1.03227 1.57580 1.79123 1.24139 1.22385 1.19442 0.96560 0.92337 0.82420 1.21478 1.01401 1.27421 1.05585 0.92582 1.25459 0.96037 0.97595 0.97757 1.70006 1.22415 1.45438 1.19429 0.86271 0.80197 0.80129 0.79919 1.19151 1.21261 1.17291 1.01548 0.72555 0.73151 0.72369 1.93506 1.70754 1.76534 1.57396 1.93641 1.86583 1.31839 1.85917 1.58171 1.23909 1.42807 1.59259 1.21584 1.00492 0.88575 0.90602 1.22887 0.94748 1.03447 0.99144 1.21211 0.84397 0.88204 0.81124 1.92995 1.82428 1.70769 1.72841 1.92990 1.72564 1.89095 1.64053 1.22926 1.01478 0.97079 0.98999 1.20565 0.88332 0.91653 0.92798 0.91554 1.22862 1.01843 0.97898 1.01833 0.93143 0.89251 0.92708 0.89916 0.90435 0.93929 0.94146 0.92651 0.90246 0.86464 0.85892 0.87031 0.87871 0.86980 0.89804 0.92007 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 10.24 71.98 0.74 -3.69 16 2 C 0.12 3.65 6.06 86.38 0.52 4.17 16 3 N -0.99 -36.53 2.82 -519.83 -1.47 -38.00 16 4 C 0.22 9.28 3.78 85.64 0.32 9.61 16 5 C -0.52 -25.73 8.25 25.60 0.21 -25.52 16 6 H 0.06 3.04 8.06 -2.91 -0.02 3.02 16 7 C 0.03 1.63 5.47 84.65 0.46 2.09 16 8 N -0.93 -53.12 13.96 21.45 0.30 -52.82 16 9 Si 0.91 40.50 27.47 68.60 1.88 42.39 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 13 S 2.79 98.93 5.70 -56.49 -0.32 98.60 16 14 O -1.00 -35.01 15.54 -128.00 -1.99 -37.00 16 15 O -1.00 -39.72 12.06 -128.00 -1.54 -41.26 16 16 N -1.00 -31.36 3.35 -491.52 -1.65 -33.01 16 17 C 0.11 2.76 6.30 86.36 0.54 3.30 16 18 C -0.16 -3.35 5.62 30.67 0.17 -3.17 16 19 C 0.29 7.32 2.10 30.62 0.06 7.39 16 20 F -0.21 -6.31 16.11 44.97 0.72 -5.59 16 21 F -0.21 -5.29 17.06 44.97 0.77 -4.52 16 22 C -0.17 -4.42 4.88 30.53 0.15 -4.27 16 23 C 0.17 5.77 3.30 44.83 0.15 5.92 16 24 H 0.07 2.57 7.92 -2.38 -0.02 2.55 16 25 C -0.19 -6.99 7.35 71.98 0.53 -6.46 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 2.21 7.61 -2.39 -0.02 2.19 16 30 H 0.08 2.45 8.11 -2.39 -0.02 2.43 16 31 H 0.04 1.91 4.90 -2.39 -0.01 1.90 16 32 H 0.04 1.67 7.53 -2.38 -0.02 1.65 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 35 H 0.12 2.57 6.77 -2.39 -0.02 2.55 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.11 2.62 8.12 -2.38 -0.02 2.60 16 40 H 0.08 3.59 1.97 -2.39 0.00 3.58 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.09 3.08 6.46 -2.39 -0.02 3.06 16 Total: -1.00 -61.78 338.83 1.54 -60.24 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.97 Total: 21.61 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 3.86 Total: -10.64 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -2.82 Total: -123.83 kcal Atomic # 8 Polarization: -74.73 SS G_CDS: -3.53 Total: -78.26 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 1.49 Total: -10.11 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.88 Total: 42.39 kcal Atomic # 16 Polarization: 98.93 SS G_CDS: -0.32 Total: 98.60 kcal Total: -61.78 1.54 -60.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528556341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.581 kcal (2) G-P(sol) polarization free energy of solvation -61.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds