Wall clock time and date at job start Tue Mar 31 2020 16:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47186 * 2 1 4 4 C 1.50694 * 109.47086 * 239.99877 * 2 1 3 5 5 H 1.08000 * 119.99932 * 240.00408 * 4 2 1 6 6 C 1.37875 * 120.00141 * 60.27638 * 4 2 1 7 7 N 1.31511 * 119.99881 * 359.72554 * 6 4 2 8 8 Si 1.86802 * 120.00097 * 179.72241 * 6 4 2 9 9 H 1.48507 * 109.47012 * 90.00287 * 8 6 4 10 10 H 1.48502 * 109.47362 * 210.00012 * 8 6 4 11 11 H 1.48501 * 109.47142 * 330.00278 * 8 6 4 12 12 N 1.46501 * 109.46924 * 119.99877 * 2 1 3 13 13 C 1.46499 * 119.99978 * 65.67549 * 12 2 1 14 14 S 1.65602 * 120.00009 * 245.67776 * 12 2 1 15 15 O 1.42098 * 106.40019 * 206.00915 * 14 12 2 16 16 O 1.42104 * 106.40212 * 338.92814 * 14 12 2 17 17 N 1.65603 * 107.21956 * 92.46676 * 14 12 2 18 18 C 1.47600 * 118.64078 * 83.31101 * 17 14 12 19 19 C 1.54297 * 111.94145 * 137.78143 * 18 17 14 20 20 C 1.50885 * 110.23319 * 319.69857 * 19 18 17 21 21 C 1.52565 * 109.35679 * 91.80193 * 20 19 18 22 22 F 1.39900 * 108.51425 * 153.73327 * 21 20 19 23 23 F 1.39899 * 108.39524 * 36.14879 * 21 20 19 24 24 C 1.47096 * 114.32541 * 274.98633 * 21 20 19 25 25 C 1.44573 * 118.64227 * 263.58299 * 17 14 12 26 26 H 1.09001 * 109.46954 * 55.27781 * 1 2 3 27 27 H 1.09003 * 109.47034 * 175.27926 * 1 2 3 28 28 H 1.08997 * 109.47117 * 295.28372 * 1 2 3 29 29 H 0.97002 * 119.99944 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46904 * 90.00325 * 13 12 2 31 31 H 1.08998 * 109.46877 * 209.99756 * 13 12 2 32 32 H 1.09002 * 109.47289 * 329.99869 * 13 12 2 33 33 H 1.09003 * 108.95027 * 258.57671 * 18 17 14 34 34 H 1.08999 * 108.94988 * 17.20736 * 18 17 14 35 35 H 1.09002 * 109.36850 * 199.42000 * 19 18 17 36 36 H 1.08997 * 109.22889 * 79.88873 * 19 18 17 37 37 H 1.08990 * 109.48858 * 331.83406 * 20 19 18 38 38 H 1.09001 * 109.50753 * 211.77275 * 20 19 18 39 39 H 1.08994 * 109.32787 * 302.54145 * 24 21 20 40 40 H 1.08998 * 109.33000 * 183.06383 * 24 21 20 41 41 H 1.09005 * 109.45187 * 30.74655 * 25 17 14 42 42 H 1.09006 * 109.44881 * 150.66573 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.7040 -0.2361 -2.4827 7 7 0.9480 0.8332 -2.6034 8 14 2.3331 -1.1122 -4.0078 9 1 1.3569 -2.1532 -4.4187 10 1 2.5020 -0.1300 -5.1087 11 1 3.6403 -1.7500 -3.7086 12 7 2.0183 -0.6906 1.1962 13 6 1.7698 -2.1242 1.3671 14 16 2.8512 0.1493 2.3552 15 8 3.6823 -0.7952 3.0157 16 8 3.3539 1.3173 1.7208 17 7 1.7465 0.6647 3.4761 18 6 1.3329 -0.2681 4.5426 19 6 1.2431 0.4296 5.9159 20 6 2.3913 1.3932 6.0878 21 6 1.9681 2.7760 5.6017 22 9 2.7295 3.7363 6.2764 23 9 0.6219 2.9669 5.9313 24 6 2.1287 2.9851 4.1546 25 6 1.2225 2.0076 3.3661 26 1 -0.3633 0.5854 -0.8447 27 1 -0.3633 -1.0242 -0.0846 28 1 -0.3633 0.4389 0.9292 29 1 0.7166 1.1667 -3.4844 30 1 2.5911 -2.6903 0.9276 31 1 1.6964 -2.3560 2.4296 32 1 0.8369 -2.3929 0.8713 33 1 0.3583 -0.6856 4.2894 34 1 2.0584 -1.0793 4.6043 35 1 1.2796 -0.3208 6.7057 36 1 0.3012 0.9743 5.9808 37 1 3.2455 1.0486 5.5051 38 1 2.6671 1.4466 7.1409 39 1 3.1693 2.8144 3.8788 40 1 1.8558 4.0105 3.9057 41 1 1.1969 2.3025 2.3170 42 1 0.2129 2.0380 3.7759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599399722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:31 Heat of formation + Delta-G solvation = -190.572085 kcal Electronic energy + Delta-G solvation = -28516.243904 eV Core-core repulsion = 24293.245685 eV Total energy + Delta-G solvation = -4222.998219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.20229 -47.98483 -39.14655 -38.44020 -37.87306 -36.88940 -34.51619 -34.09352 -33.47530 -30.93029 -27.50945 -27.20695 -26.97904 -26.51646 -22.76558 -22.38992 -21.58119 -19.82605 -19.10824 -18.59980 -18.51860 -18.19657 -17.82170 -17.29453 -17.09730 -16.73114 -16.16100 -15.59965 -15.16603 -15.07146 -14.92106 -14.59922 -14.49792 -14.32598 -14.04629 -13.71201 -13.59582 -13.53813 -13.44089 -13.26903 -13.20337 -13.15302 -13.01847 -12.98879 -12.76472 -12.62842 -12.36853 -12.27269 -12.16419 -12.08107 -11.91339 -11.68777 -11.61224 -11.10144 -10.51454 -10.12852 -9.64619 -8.11869 -6.24536 -0.39452 1.42323 1.44810 1.53740 1.97514 2.41638 2.51300 2.85210 3.17229 3.17711 3.24843 3.33405 3.36142 3.74262 3.83845 3.96171 4.12119 4.29702 4.35088 4.40974 4.52908 4.67715 4.70322 4.75708 4.80183 4.83400 4.94354 4.97006 5.00161 5.06071 5.10691 5.14304 5.22545 5.27000 5.57172 5.63531 5.81712 5.89888 6.14194 6.31379 6.83266 7.44473 8.92741 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.004109 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.669073 B = 6812.258891 C = 7117.403766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H 0.028 0.972 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.997 5.997 13 C 0.105 3.895 14 S 2.782 3.218 15 O -1.005 7.005 16 O -1.009 7.009 17 N -0.997 5.997 18 C 0.103 3.897 19 C -0.127 4.127 20 C -0.159 4.159 21 C 0.303 3.697 22 F -0.218 7.218 23 F -0.203 7.203 24 C -0.197 4.197 25 C 0.130 3.870 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.264 0.736 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -1.097 17.662 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.046 0.954 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.793 3.207 15 O -0.988 6.988 16 O -0.993 6.993 17 N -0.837 5.837 18 C -0.021 4.021 19 C -0.166 4.166 20 C -0.197 4.197 21 C 0.267 3.733 22 F -0.199 7.199 23 F -0.184 7.184 24 C -0.237 4.237 25 C 0.004 3.996 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.645 -0.811 17.596 17.812 hybrid contribution 0.181 0.026 -1.231 1.244 sum -2.464 -0.784 16.366 16.569 Atomic orbital electron populations 1.21894 0.96796 1.00453 0.99985 1.18446 0.92203 0.91538 0.81220 0.95443 1.21619 1.31804 1.12955 0.91414 0.92545 1.25606 0.95253 0.95650 1.01572 1.69979 1.37332 1.23545 1.24326 0.85629 0.78795 0.78439 0.79194 1.19501 1.21036 1.19994 1.57638 1.74335 1.18357 1.33555 1.21326 1.02000 0.79435 1.01327 1.01768 0.74065 0.72411 0.72496 1.93505 1.65649 1.63894 1.75788 1.93542 1.78874 1.50611 1.76306 1.57609 1.62794 1.21133 1.42162 1.22172 1.02574 0.90916 0.86433 1.21779 0.98601 0.99427 0.96808 1.22152 1.01529 0.91571 1.04419 1.20002 0.73187 0.88671 0.91417 1.93004 1.76451 1.67605 1.82863 1.92938 1.35500 1.95842 1.94112 1.22404 1.04054 1.04160 0.93063 1.21115 0.98333 0.79187 1.00970 0.91877 0.94150 0.94267 0.92668 0.94314 0.89967 0.90484 0.88930 0.89132 0.86565 0.88976 0.90000 0.87329 0.89672 0.86903 0.89995 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.90 71.98 0.64 -5.02 16 2 C 0.27 12.87 2.66 44.24 0.12 12.99 16 3 H 0.03 1.50 6.78 -2.39 -0.02 1.48 16 4 C -0.54 -28.55 8.30 25.60 0.21 -28.34 16 5 H 0.06 2.98 7.33 -2.91 -0.02 2.96 16 6 C 0.02 1.03 5.31 84.65 0.45 1.48 16 7 N -0.91 -50.42 11.38 21.45 0.24 -50.18 16 8 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -1.00 -39.23 3.12 -520.45 -1.62 -40.85 16 13 C 0.10 3.42 9.30 127.77 1.19 4.61 16 14 S 2.78 102.57 5.94 -56.49 -0.34 102.23 16 15 O -1.00 -38.45 15.84 -128.00 -2.03 -40.48 16 16 O -1.01 -45.13 14.93 -128.00 -1.91 -47.04 16 17 N -1.00 -26.28 2.58 -511.75 -1.32 -27.60 16 18 C 0.10 1.93 6.26 86.61 0.54 2.47 16 19 C -0.13 -1.87 5.65 30.35 0.17 -1.70 16 20 C -0.16 -2.93 5.15 29.76 0.15 -2.78 16 21 C 0.30 6.70 1.84 28.61 0.05 6.76 16 22 F -0.22 -5.42 16.89 44.97 0.76 -4.66 16 23 F -0.20 -4.37 14.12 44.97 0.64 -3.74 16 24 C -0.20 -4.81 5.11 29.40 0.15 -4.66 16 25 C 0.13 3.27 5.20 87.38 0.45 3.72 16 26 H 0.06 3.07 6.22 -2.39 -0.01 3.06 16 27 H 0.04 1.64 7.07 -2.39 -0.02 1.63 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.04 1.32 8.00 -2.39 -0.02 1.30 16 31 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 32 H 0.08 2.43 6.83 -2.39 -0.02 2.42 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.76 6.80 -2.39 -0.02 1.74 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.32 6.23 -2.39 -0.01 1.30 16 37 H 0.08 1.75 7.49 -2.39 -0.02 1.73 16 38 H 0.11 1.62 8.11 -2.39 -0.02 1.60 16 39 H 0.08 2.35 7.78 -2.39 -0.02 2.33 16 40 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.08 2.39 7.50 -2.38 -0.02 2.37 16 42 H 0.11 2.28 7.38 -2.38 -0.02 2.26 16 Total: -1.00 -66.36 341.61 1.60 -64.76 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.03 Total: 13.35 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.13 Total: -10.47 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -2.70 Total: -118.63 kcal Atomic # 8 Polarization: -83.58 SS G_CDS: -3.94 Total: -87.52 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 1.39 Total: -8.40 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 102.57 SS G_CDS: -0.34 Total: 102.23 kcal Total: -66.36 1.60 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599399722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.812 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds