Wall clock time and date at job start Tue Mar 31 2020 17:11:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47386 * 2 1
4 4 O 1.42905 * 109.47202 * 239.99557 * 2 1 3
5 5 C 1.35895 * 116.99505 * 84.88174 * 4 2 1
6 6 C 1.38754 * 120.06148 * 354.57532 * 5 4 2
7 7 C 1.38124 * 119.94655 * 180.27349 * 6 5 4
8 8 C 1.38289 * 120.05426 * 359.72912 * 7 6 5
9 9 C 1.38246 * 120.11281 * 0.02562 * 8 7 6
10 10 C 1.38169 * 120.05570 * 359.97438 * 9 8 7
11 11 C 1.50697 * 120.03051 * 180.02562 * 10 9 8
12 12 C 1.50701 * 109.46751 * 265.00190 * 11 10 9
13 13 C 1.38240 * 119.99620 * 269.72194 * 12 11 10
14 14 C 1.38240 * 119.99557 * 179.77057 * 13 12 11
15 15 C 1.38240 * 119.99663 * 0.48464 * 14 13 12
16 16 C 1.38228 * 120.00710 * 359.79277 * 15 14 13
17 17 C 1.38236 * 120.00218 * 90.00133 * 12 11 10
18 18 C 1.50701 * 109.46604 * 119.99991 * 2 1 3
19 19 O 1.21217 * 120.00120 * 120.00478 * 18 2 1
20 20 O 1.34314 * 120.00070 * 299.99525 * 18 2 1
21 21 C 1.34919 * 116.99839 * 180.02562 * 20 18 2
22 22 H 1.07999 * 120.00546 * 0.02562 * 21 20 18
23 23 C 1.38760 * 119.99834 * 180.02562 * 21 20 18
24 24 N 1.31439 * 119.99825 * 180.02562 * 23 21 20
25 25 Si 1.86799 * 119.99859 * 359.97438 * 23 21 20
26 26 H 1.48501 * 109.46913 * 90.00098 * 25 23 21
27 27 H 1.48502 * 109.47225 * 209.99994 * 25 23 21
28 28 H 1.48502 * 109.47229 * 330.00532 * 25 23 21
29 29 H 1.08997 * 109.47149 * 300.00402 * 1 2 3
30 30 H 1.09008 * 109.46977 * 60.00145 * 1 2 3
31 31 H 1.08998 * 109.47386 * 179.97438 * 1 2 3
32 32 H 1.08003 * 120.02723 * 0.02696 * 6 5 4
33 33 H 1.07994 * 119.97313 * 179.74568 * 7 6 5
34 34 H 1.08002 * 119.94374 * 180.02562 * 8 7 6
35 35 H 1.08004 * 119.97282 * 180.02562 * 9 8 7
36 36 H 1.08997 * 109.47293 * 145.00146 * 11 10 9
37 37 H 1.08999 * 109.46786 * 24.99568 * 11 10 9
38 38 H 1.07998 * 120.00299 * 359.97438 * 13 12 11
39 39 H 1.07992 * 119.99764 * 180.25223 * 14 13 12
40 40 H 1.08007 * 119.99257 * 179.77090 * 15 14 13
41 41 H 1.07997 * 120.00578 * 179.97438 * 16 15 14
42 42 H 1.08001 * 119.99602 * 359.97438 * 17 12 11
43 43 H 0.97005 * 119.99840 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0064 -0.6737 -1.1668
5 6 2.1102 0.0619 -2.3047
6 6 1.6559 1.3727 -2.3288
7 6 1.7574 2.1164 -3.4883
8 6 2.3163 1.5574 -4.6230
9 6 2.7743 0.2532 -4.6001
10 6 2.6751 -0.4949 -3.4427
11 6 3.1750 -1.9163 -3.4183
12 6 2.0302 -2.8563 -3.6960
13 6 1.2753 -3.3538 -2.6502
14 6 0.2222 -4.2123 -2.9054
15 6 -0.0696 -4.5810 -4.2053
16 6 0.6889 -4.0880 -5.2505
17 6 1.7387 -3.2254 -4.9958
18 6 2.0322 -0.7104 1.2305
19 8 2.7292 -1.6960 1.1194
20 8 1.7078 -0.2515 2.4504
21 6 2.1905 -0.9335 3.5097
22 1 2.8081 -1.8057 3.3546
23 6 1.8934 -0.5141 4.7987
24 7 2.3641 -1.1782 5.8307
25 14 0.8257 0.9950 5.0670
26 1 -0.6002 0.5862 5.1378
27 1 1.2146 1.6568 6.3383
28 1 1.0138 1.9416 3.9384
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8901
31 1 -0.3634 -1.0276 -0.0005
32 1 1.2196 1.8099 -1.4428
33 1 1.4002 3.1354 -3.5087
34 1 2.3951 2.1406 -5.5285
35 1 3.2108 -0.1810 -5.4875
36 1 3.5962 -2.1366 -2.4374
37 1 3.9433 -2.0444 -4.1808
38 1 1.5061 -3.0693 -1.6343
39 1 -0.3701 -4.5978 -2.0888
40 1 -0.8901 -5.2546 -4.4043
41 1 0.4612 -4.3764 -6.2660
42 1 2.3311 -2.8399 -5.8124
43 1 2.1567 -0.8848 6.7317
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000728349473.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:11:08
Heat of formation + Delta-G solvation = -66.202760 kcal
Electronic energy + Delta-G solvation = -27267.219264 eV
Core-core repulsion = 23436.106931 eV
Total energy + Delta-G solvation = -3831.112333 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.135 amu
Computer time = 3.59 seconds
Orbital eigenvalues (eV)
-40.61712 -39.36920 -38.87491 -37.45437 -35.28542 -33.95394 -32.45436 -31.72994
-30.79476 -30.49110 -29.65555 -26.32378 -25.93014 -24.28208 -22.71438 -22.29081
-22.04422 -20.76542 -19.88480 -18.20848 -17.95172 -16.86784 -16.69975 -15.94132
-15.76479 -15.54053 -15.17926 -15.00325 -14.78064 -14.43441 -14.35496 -14.03312
-13.56289 -13.32000 -13.25358 -13.06789 -12.67547 -12.48762 -12.40397 -12.28556
-12.13729 -12.01360 -11.56389 -11.40165 -11.38443 -11.10432 -10.93542 -10.84204
-10.76422 -10.52698 -10.41026 -9.78039 -9.18551 -8.91500 -8.82791 -8.74738
-8.61974 -8.09903 -6.42968 -4.19719 1.20682 1.39483 1.48191 1.51598
2.85190 3.04495 3.21822 3.27825 3.32139 3.69391 3.87770 4.16850
4.20358 4.69100 4.78611 4.89361 4.93675 4.96704 4.98357 5.01744
5.08408 5.16595 5.19531 5.28073 5.30721 5.48155 5.52188 5.59966
5.64193 5.76576 5.81595 5.83155 5.95689 6.10639 6.16642 6.18608
6.26928 6.31133 6.39751 6.46676 6.51267 6.63493 6.75701 6.79221
7.10765 7.44871 7.63049 7.97675 8.53256 8.93748 9.57076 10.65215
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.013632 B = 0.003628 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2053.487064 B = 7715.675370 C = 8964.701867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.102 3.898
3 H 0.099 0.901
4 O -0.279 6.279
5 C 0.144 3.856
6 C -0.211 4.211
7 C -0.083 4.083
8 C -0.161 4.161
9 C -0.078 4.078
10 C -0.106 4.106
11 C -0.037 4.037
12 C -0.072 4.072
13 C -0.100 4.100
14 C -0.120 4.120
15 C -0.128 4.128
16 C -0.127 4.127
17 C -0.118 4.118
18 C 0.412 3.588
19 O -0.516 6.516
20 O -0.245 6.245
21 C -0.383 4.383
22 H 0.111 0.889
23 C 0.068 3.932
24 N -0.871 5.871
25 Si 0.903 3.097
26 H -0.272 1.272
27 H -0.281 1.281
28 H -0.260 1.260
29 H 0.086 0.914
30 H 0.069 0.931
31 H 0.073 0.927
32 H 0.132 0.868
33 H 0.122 0.878
34 H 0.121 0.879
35 H 0.126 0.874
36 H 0.092 0.908
37 H 0.078 0.922
38 H 0.134 0.866
39 H 0.120 0.880
40 H 0.116 0.884
41 H 0.117 0.883
42 H 0.117 0.883
43 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.286 3.326 -22.301 22.951
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.044 3.956
3 H 0.116 0.884
4 O -0.192 6.192
5 C 0.098 3.902
6 C -0.230 4.230
7 C -0.101 4.101
8 C -0.180 4.180
9 C -0.096 4.096
10 C -0.107 4.107
11 C -0.074 4.074
12 C -0.072 4.072
13 C -0.118 4.118
14 C -0.138 4.138
15 C -0.146 4.146
16 C -0.145 4.145
17 C -0.136 4.136
18 C 0.256 3.744
19 O -0.409 6.409
20 O -0.154 6.154
21 C -0.458 4.458
22 H 0.129 0.871
23 C -0.136 4.136
24 N -0.510 5.510
25 Si 0.728 3.272
26 H -0.197 1.197
27 H -0.206 1.206
28 H -0.184 1.184
29 H 0.105 0.895
30 H 0.088 0.912
31 H 0.092 0.908
32 H 0.150 0.850
33 H 0.140 0.860
34 H 0.139 0.861
35 H 0.144 0.856
36 H 0.110 0.890
37 H 0.097 0.903
38 H 0.152 0.848
39 H 0.138 0.862
40 H 0.134 0.866
41 H 0.135 0.865
42 H 0.135 0.865
43 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -4.041 2.835 -22.029 22.576
hybrid contribution -0.562 0.824 0.410 1.079
sum -4.604 3.660 -21.619 22.405
Atomic orbital electron populations
1.22304 0.92628 1.04368 1.03654 1.21523 0.95440 0.96224 0.82391
0.88388 1.86164 1.80699 1.36837 1.15516 1.18877 0.94656 0.90178
0.86478 1.21359 1.06986 0.94342 1.00313 1.20904 0.97543 0.99317
0.92325 1.20975 1.02614 0.95747 0.98633 1.20827 0.98533 0.93907
0.96371 1.19066 1.03258 0.96451 0.91922 1.19460 0.94974 0.88979
1.04028 1.19762 0.97156 0.97067 0.93194 1.21358 0.94557 0.95950
0.99958 1.21205 0.97746 0.98183 0.96712 1.21108 0.99897 1.00535
0.93044 1.21039 0.96257 0.98445 0.98750 1.20980 0.98074 0.98568
0.96001 1.22210 0.82318 0.85194 0.84692 1.90638 1.37157 1.26324
1.86805 1.83466 1.65196 1.53185 1.13557 1.20646 1.32092 1.11727
0.81330 0.87142 1.24518 0.96994 0.98479 0.93598 1.69600 1.43255
1.39472 0.98690 0.86252 0.80417 0.82269 0.78224 1.19725 1.20626
1.18392 0.89499 0.91220 0.90776 0.85025 0.85963 0.86146 0.85649
0.88956 0.90322 0.84848 0.86196 0.86553 0.86535 0.86510 0.90906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.50 9.10 37.16 0.34 -2.16 16
2 C 0.10 1.77 2.75 -27.88 -0.08 1.69 16
3 H 0.10 1.50 6.31 -51.93 -0.33 1.17 16
4 O -0.28 -4.78 7.38 -39.33 -0.29 -5.07 16
5 C 0.14 2.11 6.57 -39.21 -0.26 1.85 16
6 C -0.21 -2.68 8.24 -39.43 -0.32 -3.00 16
7 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16
8 C -0.16 -1.64 10.04 -39.56 -0.40 -2.04 16
9 C -0.08 -0.85 9.68 -39.60 -0.38 -1.23 16
10 C -0.11 -1.40 5.13 -104.47 -0.54 -1.93 16
11 C -0.04 -0.48 5.20 -29.04 -0.15 -0.63 16
12 C -0.07 -0.95 5.12 -104.62 -0.54 -1.49 16
13 C -0.10 -1.47 9.52 -39.58 -0.38 -1.85 16
14 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16
15 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16
16 C -0.13 -1.38 10.05 -39.59 -0.40 -1.77 16
17 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16
18 C 0.41 9.61 7.28 36.01 0.26 9.88 16
19 O -0.52 -13.79 15.74 -25.79 -0.41 -14.20 16
20 O -0.24 -6.28 8.48 -20.71 -0.18 -6.46 16
21 C -0.38 -11.18 10.10 30.93 0.31 -10.87 16
22 H 0.11 3.58 7.09 -52.49 -0.37 3.21 16
23 C 0.07 1.92 5.49 -17.53 -0.10 1.82 16
24 N -0.87 -25.44 13.96 55.48 0.77 -24.67 16
25 Si 0.90 20.77 28.62 -169.99 -4.86 15.91 16
26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
28 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16
29 H 0.09 1.24 8.11 -51.93 -0.42 0.81 16
30 H 0.07 0.84 6.91 -51.92 -0.36 0.48 16
31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16
32 H 0.13 1.52 5.43 -52.48 -0.28 1.24 16
33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16
34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16
35 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16
36 H 0.09 1.38 7.64 -51.93 -0.40 0.98 16
37 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16
38 H 0.13 2.24 7.13 -52.49 -0.37 1.86 16
39 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16
40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16
41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
42 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16
43 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 369.07 15.07 5.56 5.56
Total: -1.00 -32.82 369.07 -9.07 -41.88
By element:
Atomic # 1 Polarization: 11.10 SS G_CDS: -5.47 Total: 5.63 kcal
Atomic # 6 Polarization: -14.39 SS G_CDS: -4.20 Total: -18.59 kcal
Atomic # 7 Polarization: -25.44 SS G_CDS: 0.77 Total: -24.67 kcal
Atomic # 8 Polarization: -24.85 SS G_CDS: -0.87 Total: -25.72 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -4.86 Total: 15.91 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -32.82 -9.07 -41.88 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000728349473.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.321 kcal
(2) G-P(sol) polarization free energy of solvation -32.817 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.203 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.59 seconds