Wall clock time and date at job start Tue Mar 31 2020 17:11:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47386 * 2 1
4 4 O 1.42905 * 109.47202 * 239.99557 * 2 1 3
5 5 C 1.35895 * 116.99505 * 84.88174 * 4 2 1
6 6 C 1.38754 * 120.06148 * 354.57532 * 5 4 2
7 7 C 1.38124 * 119.94655 * 180.27349 * 6 5 4
8 8 C 1.38289 * 120.05426 * 359.72912 * 7 6 5
9 9 C 1.38246 * 120.11281 * 0.02562 * 8 7 6
10 10 C 1.38169 * 120.05570 * 359.97438 * 9 8 7
11 11 C 1.50697 * 120.03051 * 180.02562 * 10 9 8
12 12 C 1.50701 * 109.46751 * 265.00190 * 11 10 9
13 13 C 1.38240 * 119.99620 * 269.72194 * 12 11 10
14 14 C 1.38240 * 119.99557 * 179.77057 * 13 12 11
15 15 C 1.38240 * 119.99663 * 0.48464 * 14 13 12
16 16 C 1.38228 * 120.00710 * 359.79277 * 15 14 13
17 17 C 1.38236 * 120.00218 * 90.00133 * 12 11 10
18 18 C 1.50701 * 109.46604 * 119.99991 * 2 1 3
19 19 O 1.21217 * 120.00120 * 120.00478 * 18 2 1
20 20 O 1.34314 * 120.00070 * 299.99525 * 18 2 1
21 21 C 1.34919 * 116.99839 * 180.02562 * 20 18 2
22 22 H 1.07999 * 120.00546 * 0.02562 * 21 20 18
23 23 C 1.38760 * 119.99834 * 180.02562 * 21 20 18
24 24 N 1.31439 * 119.99825 * 180.02562 * 23 21 20
25 25 Si 1.86799 * 119.99859 * 359.97438 * 23 21 20
26 26 H 1.48501 * 109.46913 * 90.00098 * 25 23 21
27 27 H 1.48502 * 109.47225 * 209.99994 * 25 23 21
28 28 H 1.48502 * 109.47229 * 330.00532 * 25 23 21
29 29 H 1.08997 * 109.47149 * 300.00402 * 1 2 3
30 30 H 1.09008 * 109.46977 * 60.00145 * 1 2 3
31 31 H 1.08998 * 109.47386 * 179.97438 * 1 2 3
32 32 H 1.08003 * 120.02723 * 0.02696 * 6 5 4
33 33 H 1.07994 * 119.97313 * 179.74568 * 7 6 5
34 34 H 1.08002 * 119.94374 * 180.02562 * 8 7 6
35 35 H 1.08004 * 119.97282 * 180.02562 * 9 8 7
36 36 H 1.08997 * 109.47293 * 145.00146 * 11 10 9
37 37 H 1.08999 * 109.46786 * 24.99568 * 11 10 9
38 38 H 1.07998 * 120.00299 * 359.97438 * 13 12 11
39 39 H 1.07992 * 119.99764 * 180.25223 * 14 13 12
40 40 H 1.08007 * 119.99257 * 179.77090 * 15 14 13
41 41 H 1.07997 * 120.00578 * 179.97438 * 16 15 14
42 42 H 1.08001 * 119.99602 * 359.97438 * 17 12 11
43 43 H 0.97005 * 119.99840 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0064 -0.6737 -1.1668
5 6 2.1102 0.0619 -2.3047
6 6 1.6559 1.3727 -2.3288
7 6 1.7574 2.1164 -3.4883
8 6 2.3163 1.5574 -4.6230
9 6 2.7743 0.2532 -4.6001
10 6 2.6751 -0.4949 -3.4427
11 6 3.1750 -1.9163 -3.4183
12 6 2.0302 -2.8563 -3.6960
13 6 1.2753 -3.3538 -2.6502
14 6 0.2222 -4.2123 -2.9054
15 6 -0.0696 -4.5810 -4.2053
16 6 0.6889 -4.0880 -5.2505
17 6 1.7387 -3.2254 -4.9958
18 6 2.0322 -0.7104 1.2305
19 8 2.7292 -1.6960 1.1194
20 8 1.7078 -0.2515 2.4504
21 6 2.1905 -0.9335 3.5097
22 1 2.8081 -1.8057 3.3546
23 6 1.8934 -0.5141 4.7987
24 7 2.3641 -1.1782 5.8307
25 14 0.8257 0.9950 5.0670
26 1 -0.6002 0.5862 5.1378
27 1 1.2146 1.6568 6.3383
28 1 1.0138 1.9416 3.9384
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8901
31 1 -0.3634 -1.0276 -0.0005
32 1 1.2196 1.8099 -1.4428
33 1 1.4002 3.1354 -3.5087
34 1 2.3951 2.1406 -5.5285
35 1 3.2108 -0.1810 -5.4875
36 1 3.5962 -2.1366 -2.4374
37 1 3.9433 -2.0444 -4.1808
38 1 1.5061 -3.0693 -1.6343
39 1 -0.3701 -4.5978 -2.0888
40 1 -0.8901 -5.2546 -4.4043
41 1 0.4612 -4.3764 -6.2660
42 1 2.3311 -2.8399 -5.8124
43 1 2.1567 -0.8848 6.7317
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000728349473.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:11:05
Heat of formation + Delta-G solvation = -82.818751 kcal
Electronic energy + Delta-G solvation = -27267.939787 eV
Core-core repulsion = 23436.106931 eV
Total energy + Delta-G solvation = -3831.832856 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.135 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.86665 -40.99764 -39.95938 -38.60613 -37.30829 -34.90160 -34.58769 -33.08724
-31.73967 -31.38970 -30.61140 -27.97278 -27.25540 -25.71280 -23.85100 -23.26318
-23.05176 -21.73063 -21.51085 -20.25789 -19.24472 -18.54879 -17.70259 -17.41652
-17.11356 -16.66233 -16.49747 -16.17548 -15.96377 -15.91040 -15.65672 -15.32079
-14.62509 -14.49598 -14.41155 -14.29901 -14.22713 -13.99980 -13.61047 -13.35268
-13.29046 -13.21800 -12.98407 -12.84236 -12.47578 -12.31954 -12.28331 -12.15712
-11.94444 -11.89577 -11.79046 -11.72514 -11.09649 -10.88302 -9.81219 -9.78275
-9.56200 -9.08370 -8.59520 -6.48534 0.31674 0.47816 0.52978 0.58336
1.17749 1.28865 1.41661 1.50725 1.61417 2.24867 2.67442 2.80648
2.85520 2.93603 3.58122 3.78667 3.82162 3.91178 4.00647 4.05367
4.09073 4.18287 4.24819 4.32945 4.34429 4.40143 4.60435 4.62364
4.62538 4.66080 4.72811 4.83472 4.90986 5.04461 5.06428 5.19440
5.25581 5.38550 5.43276 5.50840 5.59445 5.61828 5.66031 5.79739
5.82038 5.90236 6.16522 6.36203 6.45473 6.74389 7.44873 8.53307
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.013632 B = 0.003628 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2053.487064 B = 7715.675370 C = 8964.701867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.113 3.887
3 H 0.125 0.875
4 O -0.304 6.304
5 C 0.107 3.893
6 C -0.220 4.220
7 C -0.083 4.083
8 C -0.154 4.154
9 C -0.077 4.077
10 C -0.121 4.121
11 C -0.034 4.034
12 C -0.081 4.081
13 C -0.129 4.129
14 C -0.137 4.137
15 C -0.129 4.129
16 C -0.122 4.122
17 C -0.117 4.117
18 C 0.410 3.590
19 O -0.561 6.561
20 O -0.243 6.243
21 C -0.413 4.413
22 H 0.054 0.946
23 C 0.019 3.981
24 N -0.914 5.914
25 Si 0.983 3.017
26 H -0.256 1.256
27 H -0.265 1.265
28 H -0.244 1.244
29 H 0.094 0.906
30 H 0.102 0.898
31 H 0.059 0.941
32 H 0.140 0.860
33 H 0.152 0.848
34 H 0.154 0.846
35 H 0.155 0.845
36 H 0.053 0.947
37 H 0.104 0.896
38 H 0.094 0.906
39 H 0.119 0.881
40 H 0.142 0.858
41 H 0.151 0.849
42 H 0.147 0.853
43 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.140 6.341 -26.030 27.486
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.056 3.944
3 H 0.142 0.858
4 O -0.218 6.218
5 C 0.063 3.937
6 C -0.238 4.238
7 C -0.101 4.101
8 C -0.171 4.171
9 C -0.095 4.095
10 C -0.122 4.122
11 C -0.071 4.071
12 C -0.081 4.081
13 C -0.147 4.147
14 C -0.155 4.155
15 C -0.147 4.147
16 C -0.140 4.140
17 C -0.134 4.134
18 C 0.256 3.744
19 O -0.455 6.455
20 O -0.152 6.152
21 C -0.489 4.489
22 H 0.072 0.928
23 C -0.182 4.182
24 N -0.553 5.553
25 Si 0.802 3.198
26 H -0.180 1.180
27 H -0.189 1.189
28 H -0.167 1.167
29 H 0.113 0.887
30 H 0.120 0.880
31 H 0.078 0.922
32 H 0.157 0.843
33 H 0.169 0.831
34 H 0.172 0.828
35 H 0.172 0.828
36 H 0.071 0.929
37 H 0.122 0.878
38 H 0.112 0.888
39 H 0.137 0.863
40 H 0.160 0.840
41 H 0.169 0.831
42 H 0.165 0.835
43 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -5.886 5.839 -25.776 27.076
hybrid contribution 0.123 -0.217 1.401 1.423
sum -5.763 5.622 -24.375 25.670
Atomic orbital electron populations
1.22292 0.90129 1.04087 1.05583 1.21538 0.97016 0.95922 0.79945
0.85786 1.86155 1.81614 1.37902 1.16154 1.19259 0.97104 0.91421
0.85959 1.21543 1.07076 0.93570 1.01660 1.21301 0.96774 1.00412
0.91615 1.21428 1.00654 0.95479 0.99587 1.21180 0.97926 0.94168
0.96206 1.19278 1.03713 0.96594 0.92611 1.19404 0.95531 0.89540
1.02648 1.19853 0.97101 0.97303 0.93853 1.21187 0.96584 0.98153
0.98804 1.21319 0.97610 0.98428 0.98108 1.21421 1.00594 1.00521
0.92160 1.21480 0.95198 0.97171 1.00130 1.21303 0.98401 0.98181
0.95565 1.23724 0.80495 0.84537 0.85684 1.90615 1.38969 1.28528
1.87410 1.83467 1.65422 1.52690 1.13636 1.20302 1.33470 1.11606
0.83474 0.92777 1.25608 0.97999 1.02205 0.92340 1.69702 1.44430
1.41561 0.99653 0.85090 0.78401 0.77234 0.79103 1.18027 1.18919
1.16746 0.88682 0.87963 0.92233 0.84253 0.83064 0.82830 0.82780
0.92866 0.87769 0.88783 0.86297 0.84006 0.83093 0.83501 0.89864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.72 9.10 71.98 0.66 -4.06 16
2 C 0.11 4.04 2.75 29.85 0.08 4.12 16
3 H 0.12 3.73 6.31 -2.39 -0.02 3.72 16
4 O -0.30 -11.09 7.38 -73.33 -0.54 -11.63 16
5 C 0.11 3.15 6.57 22.51 0.15 3.29 16
6 C -0.22 -5.15 8.24 22.37 0.18 -4.96 16
7 C -0.08 -1.48 10.04 22.25 0.22 -1.25 16
8 C -0.15 -2.45 10.04 22.28 0.22 -2.23 16
9 C -0.08 -1.43 9.68 22.26 0.22 -1.21 16
10 C -0.12 -3.12 5.13 -19.77 -0.10 -3.22 16
11 C -0.03 -0.91 5.20 29.10 0.15 -0.76 16
12 C -0.08 -2.19 5.12 -19.86 -0.10 -2.30 16
13 C -0.13 -4.13 9.52 22.27 0.21 -3.92 16
14 C -0.14 -3.76 10.05 22.27 0.22 -3.53 16
15 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16
16 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16
17 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16
18 C 0.41 20.41 7.28 71.24 0.52 20.93 16
19 O -0.56 -32.95 15.74 27.19 0.43 -32.52 16
20 O -0.24 -13.00 8.48 14.85 0.13 -12.87 16
21 C -0.41 -25.74 10.10 67.94 0.69 -25.05 16
22 H 0.05 3.88 7.09 -2.91 -0.02 3.86 16
23 C 0.02 1.10 5.49 84.88 0.47 1.56 16
24 N -0.91 -55.43 13.96 21.63 0.30 -55.13 16
25 Si 0.98 42.57 28.62 68.60 1.96 44.53 16
26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16
27 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16
28 H -0.24 -9.90 7.11 99.48 0.71 -9.20 16
29 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16
30 H 0.10 2.28 6.91 -2.38 -0.02 2.27 16
31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
32 H 0.14 2.90 5.43 -2.91 -0.02 2.89 16
33 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16
34 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16
35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16
36 H 0.05 1.79 7.64 -2.39 -0.02 1.77 16
37 H 0.10 2.09 8.00 -2.39 -0.02 2.07 16
38 H 0.09 3.68 7.13 -2.91 -0.02 3.66 16
39 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16
40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16
41 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16
42 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16
43 H 0.29 15.82 8.31 -92.70 -0.77 15.05 16
Total: -1.00 -79.76 369.07 7.75 -72.01
By element:
Atomic # 1 Polarization: 23.99 SS G_CDS: 1.02 Total: 25.01 kcal
Atomic # 6 Polarization: -33.85 SS G_CDS: 4.45 Total: -29.40 kcal
Atomic # 7 Polarization: -55.43 SS G_CDS: 0.30 Total: -55.13 kcal
Atomic # 8 Polarization: -57.04 SS G_CDS: 0.01 Total: -57.03 kcal
Atomic # 14 Polarization: 42.57 SS G_CDS: 1.96 Total: 44.53 kcal
Total: -79.76 7.75 -72.01 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000728349473.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.808 kcal
(2) G-P(sol) polarization free energy of solvation -79.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.569 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.011 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.819 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds